Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb343050 Zea mays HOM05D000200 ORTHO05D017721 4.2e-48 194.5 109 100.0
Zm00001eb165530 Zea mays HOM05D001906 ORTHO05D017721 7.4e-45 183.7 109 96.3
Zm00001eb361410 Zea mays HOM05D000200 ORTHO05D000262 4.0e-14 81.6 42 90.5
Os01g0713900 Oryza sativa ssp. japonica HOM05D000200 ORTHO05D000262 3.4e-13 78.6 42 85.7
Zm00001eb021150 Zea mays HOM05D001906 ORTHO05D017721 4.9e-12 74.7 37 91.9
Zm00001eb155010 Zea mays HOM05D000200 ORTHO05D000262 6.4e-12 74.3 42 83.3
Os05g0537200 Oryza sativa ssp. japonica HOM05D000200 ORTHO05D000262 7.8e-10 67.4 41 70.7
Zm00001eb294190 Zea mays HOM05D000200 ORTHO05D000262 2.3e-09 65.9 42 69.0
SGA_v2.0_scaffold21G09449 Striga asiatica HOM05D000200 ORTHO05D000262 8.6e-09 63.9 59 54.2
vmacro06307 Vaccinium macrocarpon HOM05D000200 ORTHO05D000262 1.1e-08 63.5 47 57.4
MELO3C015501.2 Cucumis melo HOM05D000200 ORTHO05D000262 1.9e-08 62.8 44 54.5
MSTRG.10529 Avicennia marina HOM05D000200 ORTHO05D000262 3.3e-08 62.0 42 59.5
Haze_25956 Corylus avellana HOM05D000200 ORTHO05D000262 3.3e-08 62.0 51 52.9
CsaV3_1G040730 Cucumis sativus L. HOM05D000200 ORTHO05D000262 4.3e-08 61.6 39 61.5
Gohir.D13G198000 Gossypium hirsutum HOM05D000200 ORTHO05D000262 4.3e-08 61.6 47 51.1
Gorai.013G226700 Gossypium raimondii HOM05D000200 ORTHO05D000262 4.3e-08 61.6 47 51.1
Cc06_g11840 Coffea canephora HOM05D000200 ORTHO05D000262 5.6e-08 61.2 45 60.0
HanXRQChr09g0237941 Helianthus annuus HOM05D000200 ORTHO05D000262 5.6e-08 61.2 42 59.5
ATR0051G032 Amborella trichopoda HOM05D000200 ORTHO05D000262 7.3e-08 60.8 46 63.0
Gohir.A05G032500 Gossypium hirsutum HOM05D000200 ORTHO05D000262 7.3e-08 60.8 47 53.2
Gohir.D05G033900 Gossypium hirsutum HOM05D000200 ORTHO05D000262 7.3e-08 60.8 47 53.2
Gorai.009G034300 Gossypium raimondii HOM05D000200 ORTHO05D000262 7.3e-08 60.8 47 53.2
Gohir.A07G013600 Gossypium hirsutum HOM05D000200 ORTHO05D000262 9.5e-08 60.5 44 54.5
GSVIVG01015146001 Vitis vinifera HOM05D000200 ORTHO05D000262 9.5e-08 60.5 49 55.1
Ah.08g216530 Amaranthus hybridus HOM05D000200 ORTHO05D000262 1.2e-07 60.1 42 59.5
BcaC07g41374 Brassica carinata HOM05D000200 ORTHO05D000262 1.2e-07 60.1 37 67.6
C08p43800 Brassica napus HOM05D000200 ORTHO05D000262 1.2e-07 60.1 37 67.6
BolC8t51928H Brassica oleracea HOM05D000200 ORTHO05D000262 1.2e-07 60.1 37 67.6
Duzib150G0166 Durio zibethinus HOM05D000200 ORTHO05D000262 1.2e-07 60.1 47 51.1
ECA240G3437 Erigeron canadensis HOM05D000200 ORTHO05D000262 1.2e-07 60.1 42 61.9
Gohir.D07G013400 Gossypium hirsutum HOM05D000200 ORTHO05D000262 1.2e-07 60.1 47 48.9
Gorai.001G014100 Gossypium raimondii HOM05D000200 ORTHO05D000262 1.2e-07 60.1 47 48.9
Lsat_1_v5_gn_7_34740 Lactuca sativa HOM05D000200 ORTHO05D000262 1.2e-07 60.1 42 59.5
Thecc.09G082300 Theobroma cacao HOM05D000200 ORTHO05D000262 1.2e-07 60.1 47 48.9
A09p60300 Brassica napus HOM05D000200 ORTHO05D000262 1.6e-07 59.7 37 67.6
BraA09t41403Z Brassica rapa HOM05D000200 ORTHO05D000262 1.6e-07 59.7 37 67.6
Cpa.g.sc28.105 Carica papaya HOM05D000200 ORTHO05D000262 1.6e-07 59.7 42 59.5
ClCG03G015310 Citrullus lanatus HOM05D000200 ORTHO05D000262 1.6e-07 59.7 39 59.0
Sed0001595 Sechium edule HOM05D000200 ORTHO05D000262 1.6e-07 59.7 39 59.0
SGA_v2.0_scaffold23G10058 Striga asiatica HOM05D000200 ORTHO05D000262 1.6e-07 59.7 42 59.5
HPP92_003958 Vanilla planifolia HOM05D000200 ORTHO05D000262 1.6e-07 59.7 42 61.9
Aa31LG7G2360 Aethionema arabicum HOM05D000200 ORTHO05D000262 2.1e-07 59.3 37 67.6
Migut.L01536 Erythranthe guttata HOM05D000200 ORTHO05D000262 2.1e-07 59.3 42 57.1
Eucgr.C03404 Eucalyptus grandis HOM05D000200 ORTHO05D000262 2.1e-07 59.3 47 51.1
SalBow1G3336 Salvia bowleyana HOM05D000200 ORTHO05D000262 2.1e-07 59.3 41 61.0
TAR623G1580 Trochodendron aralioides HOM05D000200 ORTHO05D000262 2.1e-07 59.3 42 61.9
TAR636G2747 Trochodendron aralioides HOM05D000200 ORTHO05D000262 2.1e-07 59.3 42 61.9
Migut.J00962 Erythranthe guttata HOM05D000200 ORTHO05D000262 2.8e-07 58.9 41 58.5
Rhsim03G0230800 Rhododendron simsii HOM05D000200 ORTHO05D000262 2.8e-07 58.9 42 59.5
Manes.03G037500 Manihot esculenta HOM05D000200 ORTHO05D000262 3.6e-07 58.5 42 54.8
Peaxi162Scf00762g00111 Petunia axillaris HOM05D000200 ORTHO05D000262 3.6e-07 58.5 47 51.1
Hund05752 Selenicereus undatus HOM05D000200 ORTHO05D000262 3.6e-07 58.5 43 58.1
TWI63G1756 Tripterygium wilfordii HOM05D000200 ORTHO05D000262 3.6e-07 58.5 38 60.5
TAR624G0222 Trochodendron aralioides HOM05D000200 ORTHO05D000262 3.6e-07 58.5 42 61.9
Aqoxy7G01124 Aquilegia oxysepala HOM05D000200 ORTHO05D000262 4.7e-07 58.2 42 57.1
Lj7C681T4 Lonicera japonica HOM05D000200 ORTHO05D000262 4.7e-07 58.2 44 56.8
PSO210G3579 Papaver somniferum HOM05D000200 ORTHO05D000262 4.7e-07 58.2 40 57.5
PSO210G4146 Papaver somniferum HOM05D000200 ORTHO05D000262 4.7e-07 58.2 40 60.0
Atru.chr1.3812 Acer truncatum HOM05D000200 ORTHO05D000262 6.2e-07 57.8 39 59.0
Rhsim05G0013700 Rhododendron simsii HOM05D000200 ORTHO05D000262 6.2e-07 57.8 42 57.1
CiPaw.04G147000 Carya illinoinensis HOM05D000200 ORTHO05D000262 8.0e-07 57.4 38 57.9
Duzib168G2381 Durio zibethinus HOM05D000200 ORTHO05D000262 8.0e-07 57.4 47 46.8
Manes.16G098500 Manihot esculenta HOM05D000200 ORTHO05D000262 8.0e-07 57.4 42 54.8
unitig_26.g9176 Utricularia gibba HOM05D000200 ORTHO05D000262 8.0e-07 57.4 41 61.0
unitig_749.g14232 Utricularia gibba HOM05D000200 ORTHO05D000262 8.0e-07 57.4 42 57.1
AT1G17580 Arabidopsis thaliana HOM05D000200 ORTHO05D000262 1.1e-06 57.0 37 64.9
MSTRG.26452 Avicennia marina HOM05D000200 ORTHO05D000262 1.1e-06 57.0 42 57.1
CARHR018180 Cardamine hirsuta HOM05D000200 ORTHO05D000262 1.1e-06 57.0 37 59.5
CiPaw.07G070400 Carya illinoinensis HOM05D000200 ORTHO05D000262 1.1e-06 57.0 39 56.4
DCAR_024720 Daucus carota HOM05D000200 ORTHO05D000262 1.1e-06 57.0 42 54.8
Hund09583 Selenicereus undatus HOM05D000200 ORTHO05D017721 1.1e-06 57.0 44 52.3
TWI32G1269 Tripterygium wilfordii HOM05D000200 ORTHO05D000262 1.1e-06 57.0 38 60.5
TAR149G0001 Trochodendron aralioides HOM05D005151 ORTHO05D006322 1.1e-06 57.0 42 59.5
TAR587G0001 Trochodendron aralioides HOM05D005151 ORTHO05D006322 1.1e-06 57.0 42 59.5
BcaB05g22846 Brassica carinata HOM05D000200 ORTHO05D000262 1.4e-06 56.6 39 53.8
CANSAT56G3691 Cannabis sativa HOM05D000200 ORTHO05D000262 1.4e-06 56.6 42 59.5
COL.COLO4_30722 Corchorus olitorius HOM05D000200 ORTHO05D000262 1.4e-06 56.6 39 56.4
Dinv36801 Davidia involucrata HOM05D000200 ORTHO05D000262 1.4e-06 56.6 42 54.8
Thhalv10006551m.g Eutrema salsugineum HOM05D000200 ORTHO05D000262 1.4e-06 56.6 37 62.2
Medtr7g115430 Medicago truncatula HOM05D000200 ORTHO05D000262 1.4e-06 56.6 39 56.4
QL02p061523 Quercus lobata HOM05D000200 ORTHO05D000262 1.4e-06 56.6 38 57.9
Sc15g0000360 Simmondsia chinensis HOM05D000200 ORTHO05D000262 1.4e-06 56.6 42 54.8
GSVIVG01016822001 Vitis vinifera HOM05D000200 ORTHO05D000262 1.4e-06 56.6 44 59.1
AUR62001508 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.8e-06 56.2 42 59.5
AUR62009862 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.8e-06 56.2 42 59.5
Ca_09435_v3 Cicer arietinum L. HOM05D000200 ORTHO05D000262 1.8e-06 56.2 39 56.4
Sp6g23970 Schrenkiella parvula HOM05D000200 ORTHO05D000262 1.8e-06 56.2 39 53.8
THA.LOC104811004 Tarenaya hassleriana HOM05D000200 ORTHO05D000262 1.8e-06 56.2 39 53.8
THA.LOC104812230 Tarenaya hassleriana HOM05D000200 ORTHO05D000262 1.8e-06 56.2 38 60.5
BcaB01g04786 Brassica carinata HOM05D000200 ORTHO05D000262 2.3e-06 55.8 39 53.8
A03p10090 Brassica napus HOM05D000200 ORTHO05D000262 2.3e-06 55.8 39 53.8
C03p11630 Brassica napus HOM05D000200 ORTHO05D000262 2.3e-06 55.8 39 53.8
BolC3t13634H Brassica oleracea HOM05D000200 ORTHO05D000262 2.3e-06 55.8 39 53.8
BraA03t10320Z Brassica rapa HOM05D000200 ORTHO05D000262 2.3e-06 55.8 39 53.8
CSS0010719 Camellia sinensis var. sinensis HOM05D000200 ORTHO05D000262 2.3e-06 55.8 42 57.1
CiPaw.03G210800 Carya illinoinensis HOM05D000200 ORTHO05D000262 2.3e-06 55.8 38 57.9
Nn8g38752 Nelumbo nucifera HOM05D000200 ORTHO05D000262 2.3e-06 55.8 42 57.1
Nitab4.5_0002079g0080 Nicotiana tabacum HOM05D000200 ORTHO05D000262 2.3e-06 55.8 45 57.8
Nitab4.5_0002842g0060 Nicotiana tabacum HOM05D000200 ORTHO05D000262 2.3e-06 55.8 45 57.8
EL10Ac7g16386 Beta vulgaris HOM05D000200 ORTHO05D000262 3.1e-06 55.5 42 57.1
Duzib235G1291 Durio zibethinus HOM05D000200 ORTHO05D000262 3.1e-06 55.5 38 57.9
MD15G1212800 Malus domestica HOM05D000200 ORTHO05D000262 3.1e-06 55.5 47 48.9
Nn6g35562 Nelumbo nucifera HOM05D000200 ORTHO05D000262 3.1e-06 55.5 44 54.5
Sc08g0008700 Simmondsia chinensis HOM05D000200 ORTHO05D000262 3.1e-06 55.5 38 55.3
Atru.chr7.1652 Acer truncatum HOM05D000200 ORTHO05D000262 4.0e-06 55.1 42 52.4
MD02G1085600 Malus domestica HOM05D000200 ORTHO05D000262 4.0e-06 55.1 47 48.9
Potri.006G145700 Populus trichocarpa HOM05D000200 ORTHO05D000262 4.0e-06 55.1 38 57.9
Rhsim13G0032100 Rhododendron simsii HOM05D000200 ORTHO05D000262 4.0e-06 55.1 39 56.4
Sabra06G0115200 Salix brachista HOM05D000200 ORTHO05D000262 4.0e-06 55.1 57 45.6
Sp1g15710 Schrenkiella parvula HOM05D000200 ORTHO05D000262 4.0e-06 55.1 37 62.2
VMungo1215G1732 Vigna mungo HOM05D000200 ORTHO05D000262 4.0e-06 55.1 45 51.1
A02p06260 Brassica napus HOM05D000200 ORTHO05D000262 5.2e-06 54.7 39 51.3
BNapus_Darmor_BZH_scaffold_38p01580 Brassica napus HOM05D000200 ORTHO05D000262 5.2e-06 54.7 39 51.3
BraA02t05574Z Brassica rapa HOM05D000200 ORTHO05D000262 5.2e-06 54.7 39 51.3
CiPaw.08G119300 Carya illinoinensis HOM05D000200 ORTHO05D000262 5.2e-06 54.7 39 56.4
AUR62011905 Chenopodium quinoa HOM05D000200 ORTHO05D000262 5.2e-06 54.7 41 51.2
Ciclev10007325m.g Citrus clementina HOM05D000200 ORTHO05D000262 5.2e-06 54.7 42 52.4
Thhalv10012431m.g Eutrema salsugineum HOM05D000200 ORTHO05D000262 5.2e-06 54.7 39 51.3
FAN28G0331 Fragaria x ananassa HOM05D000200 ORTHO05D000262 5.2e-06 54.7 47 51.1
Glyma.17G051900 Glycine max HOM05D000200 ORTHO05D000262 5.2e-06 54.7 40 52.5
vmacro17168 Vaccinium macrocarpon HOM05D000200 ORTHO05D000262 5.2e-06 54.7 42 54.8
Atru.chr2.883 Acer truncatum HOM05D000200 ORTHO05D000262 6.8e-06 54.3 39 53.8
Aa31LG1G14190 Aethionema arabicum HOM05D000200 ORTHO05D000262 6.8e-06 54.3 39 51.3
EL10Ac8g19151 Beta vulgaris HOM05D000200 ORTHO05D000262 6.8e-06 54.3 43 51.2
A09p19480 Brassica napus HOM05D000200 ORTHO05D000262 6.8e-06 54.3 47 51.1
BraA09t37563Z Brassica rapa HOM05D000200 ORTHO05D000262 6.8e-06 54.3 47 51.1
CAN.G147.11 Capsicum annuum HOM05D000200 ORTHO05D000262 6.8e-06 54.3 39 56.4
AUR62034432 Chenopodium quinoa HOM05D000487 ORTHO05D000405 6.8e-06 54.3 66 40.9
Glyma.13G107400 Glycine max HOM05D000200 ORTHO05D000262 6.8e-06 54.3 39 53.8
Lj4g0006759 Lotus japonicus HOM05D000200 ORTHO05D000262 6.8e-06 54.3 39 56.4
Lalb_Chr02g0148971 Lupinus albus HOM05D000200 ORTHO05D000262 6.8e-06 54.3 43 44.2
MBI11_g40185_MAGBIO Magnolia biondii HOM05D000200 ORTHO05D000262 6.8e-06 54.3 39 53.8
Phvul.003G133500 Phaseolus vulgaris HOM05D000200 ORTHO05D000262 6.8e-06 54.3 39 56.4
Phvul.007G189300 Phaseolus vulgaris HOM05D000200 ORTHO05D000262 6.8e-06 54.3 39 48.7
Hund08708 Selenicereus undatus HOM05D000200 ORTHO05D000262 6.8e-06 54.3 42 52.4
Solyc07g041150.4 Solanum lycopersicum HOM05D000200 ORTHO05D000262 6.8e-06 54.3 39 56.4
Sopen07g020400 Solanum pennellii HOM05D000200 ORTHO05D000262 6.8e-06 54.3 39 56.4
SGA_v2.0_scaffold90G27703 Striga asiatica HOM05D000200 ORTHO05D000262 6.8e-06 54.3 45 48.9
VMungo0720G0672 Vigna mungo HOM05D000200 ORTHO05D000262 6.8e-06 54.3 39 48.7
arahy.Tifrunner.gnm1.ann1.RZI0W9 Arachis hypogaea HOM05D000200 ORTHO05D000262 8.9e-06 53.9 50 42.0
C09p24560 Brassica napus HOM05D000200 ORTHO05D000262 8.9e-06 53.9 43 48.8
BolC9t55370H Brassica oleracea HOM05D000200 ORTHO05D000262 8.9e-06 53.9 43 48.8
Gohir.D10G058600 Gossypium hirsutum HOM05D000200 ORTHO05D000262 8.9e-06 53.9 38 57.9
Gorai.011G062700 Gossypium raimondii HOM05D000200 ORTHO05D000262 8.9e-06 53.9 38 57.9
Nn3g19579 Nelumbo nucifera HOM05D000200 ORTHO05D000262 8.9e-06 53.9 41 53.7
PGSC0003DMG400020947 Solanum tuberosum HOM05D000200 ORTHO05D000262 8.9e-06 53.9 39 56.4
TPR.G6994 Trifolium pratense HOM05D000200 ORTHO05D000262 8.9e-06 53.9 39 51.3
TAR636G1291 Trochodendron aralioides HOM05D000200 ORTHO05D000262 8.9e-06 53.9 39 56.4


User provided reference genes

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