Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 1.1e-81 306.6 153 100.0
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 2.0e-64 249.2 146 83.6
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 1.1e-62 243.4 146 80.8
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 1.9e-46 189.5 141 63.8
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 4.2e-46 188.3 142 61.3
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 4.2e-46 188.3 142 63.4
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 1.2e-45 186.8 144 62.5
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 1.2e-45 186.8 144 62.5
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 2.1e-45 186.0 142 62.7
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 2.7e-45 185.7 149 60.4
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 3.6e-45 185.3 141 64.5
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 4.7e-45 184.9 144 61.1
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 1.4e-44 183.3 144 62.5
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 3.0e-44 182.2 142 59.2
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 3.0e-44 182.2 142 61.3
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 5.2e-44 181.4 142 62.7
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 6.8e-44 181.0 142 60.6
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 8.8e-44 180.6 142 59.9
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 8.8e-44 180.6 142 60.6
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 1.2e-43 180.3 144 61.1
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 1.2e-43 180.3 142 59.2
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 1.5e-43 179.9 143 62.2
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 1.5e-43 179.9 142 62.0
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 2.0e-43 179.5 142 59.9
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 2.0e-43 179.5 142 59.9
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 2.6e-43 179.1 144 59.7
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 2.6e-43 179.1 142 58.5
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 3.4e-43 178.7 142 62.0
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 3.4e-43 178.7 144 59.0
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 4.4e-43 178.3 145 61.4
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 5.7e-43 177.9 142 60.6
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 5.7e-43 177.9 142 60.6
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 7.5e-43 177.6 141 60.3
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 9.8e-43 177.2 144 59.7
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 9.8e-43 177.2 141 61.0
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 9.8e-43 177.2 141 61.7
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 1.3e-42 176.8 145 59.3
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 1.3e-42 176.8 144 61.1
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 1.3e-42 176.8 146 60.3
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 1.3e-42 176.8 142 59.2
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 1.7e-42 176.4 144 59.7
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 1.7e-42 176.4 142 58.5
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 1.7e-42 176.4 139 61.2
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 1.7e-42 176.4 141 61.7
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.8e-42 175.6 142 59.2
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 2.8e-42 175.6 142 58.5
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 2.8e-42 175.6 142 60.6
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 3.7e-42 175.3 144 57.6
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 3.7e-42 175.3 144 58.3
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 3.7e-42 175.3 142 57.0
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 4.9e-42 174.9 142 60.6
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 4.9e-42 174.9 141 60.3
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 6.3e-42 174.5 142 58.5
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 6.3e-42 174.5 139 59.0
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 8.3e-42 174.1 141 57.4
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 8.3e-42 174.1 142 57.7
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 8.3e-42 174.1 142 60.6
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 8.3e-42 174.1 138 57.2
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 8.3e-42 174.1 142 58.5
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 8.3e-42 174.1 144 55.6
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 1.1e-41 173.7 142 59.2
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.4e-41 173.3 142 58.5
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 1.4e-41 173.3 141 61.7
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.8e-41 172.9 142 57.7
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 1.8e-41 172.9 143 55.9
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 2.4e-41 172.6 143 56.6
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.4e-41 172.6 141 60.3
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 3.1e-41 172.2 144 58.3
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 3.1e-41 172.2 141 58.9
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.1e-41 171.8 141 57.4
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 4.1e-41 171.8 140 60.0
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 5.4e-41 171.4 144 59.0
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 5.4e-41 171.4 143 55.9
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 7.0e-41 171.0 144 56.9
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 7.0e-41 171.0 143 55.2
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 9.2e-41 170.6 142 56.3
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 9.2e-41 170.6 144 56.9
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 9.2e-41 170.6 144 56.9
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.2e-40 170.2 142 56.3
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.2e-40 170.2 142 56.3
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 1.2e-40 170.2 144 56.2
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 1.2e-40 170.2 144 56.2
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 1.6e-40 169.9 144 56.2
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 1.6e-40 169.9 142 58.5
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.6e-40 169.9 138 58.0
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 3.5e-40 168.7 143 54.5
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 3.5e-40 168.7 131 62.6
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 4.5e-40 168.3 141 56.7
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 4.5e-40 168.3 142 54.9
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 5.9e-40 167.9 140 56.4
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 5.9e-40 167.9 143 55.2
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 7.7e-40 167.5 142 57.0
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 1.0e-39 167.2 142 57.0
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.0e-39 167.2 142 56.3
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.0e-39 167.2 144 52.8
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 1.3e-39 166.8 142 56.3
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 1.3e-39 166.8 136 57.4
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.7e-39 166.4 143 54.5
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 2.3e-39 166.0 142 55.6
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 2.3e-39 166.0 142 56.3
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 2.3e-39 166.0 143 53.8
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 2.9e-39 165.6 142 54.9
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 3.8e-39 165.2 144 56.9
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 3.8e-39 165.2 142 54.9
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 3.8e-39 165.2 142 54.2
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 3.8e-39 165.2 145 57.9
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 5.0e-39 164.9 142 54.9
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 5.0e-39 164.9 144 56.2
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.0e-39 164.9 142 56.3
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 6.6e-39 164.5 144 55.6
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 6.6e-39 164.5 141 56.0
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 6.6e-39 164.5 142 54.9
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 8.6e-39 164.1 144 55.6
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 8.6e-39 164.1 144 54.2
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 1.1e-38 163.7 139 53.2
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 1.1e-38 163.7 141 56.0
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 1.5e-38 163.3 142 54.2
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.5e-38 163.3 116 63.8
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 1.9e-38 162.9 142 53.5
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 3.3e-38 162.2 141 57.4
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 4.3e-38 161.8 142 54.2
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 4.3e-38 161.8 144 54.9
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 9.5e-38 160.6 142 54.2
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 2.1e-37 159.5 140 54.3
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 2.1e-37 159.5 131 57.3
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 6.1e-37 157.9 118 66.1
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 8.0e-37 157.5 142 53.5
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 5.2e-36 154.8 138 54.3
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 1.5e-35 153.3 127 58.3
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 4.4e-35 151.8 141 53.2
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 1.3e-34 150.2 116 61.2
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.1e-33 147.1 142 53.5
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 7.0e-33 144.4 141 49.6
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 7.0e-33 144.4 107 63.6
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 9.5e-30 134.0 135 50.4
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.2e-27 127.1 87 66.7
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 1.5e-27 126.7 83 69.9
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 2.0e-27 126.3 138 47.1
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 5.8e-27 124.8 140 46.4
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 1.9e-25 119.8 152 42.8
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 4.1e-25 118.6 93 61.3
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 1.6e-24 116.7 107 54.2
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 2.7e-24 115.9 132 44.7
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 6.0e-24 114.8 142 45.1
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 2.3e-20 102.8 62 72.6
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 2.0e-19 99.8 67 64.2
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 9.8e-19 97.4 108 46.3
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 1.7e-18 96.7 84 57.1
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 8.3e-18 94.4 108 48.1
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 1.4e-17 93.6 68 60.3
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.4e-17 92.8 59 62.7
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 9.2e-17 90.9 54 70.4
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 6.0e-16 88.2 62 62.9
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 8.6e-15 84.3 94 45.7
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.1e-14 84.0 48 72.9
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 4.3e-14 82.0 61 59.0
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 1.2e-13 80.5 97 44.3
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 8.1e-13 77.8 54 61.1
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 1.5e-11 73.6 47 63.8
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 2.6e-11 72.8 47 68.1
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 3.8e-10 68.9 60 58.3
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 8.4e-10 67.8 84 45.2
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.1e-09 65.5 39 69.2
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 4.6e-08 62.0 45 62.2
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 6.0e-08 61.6 54 51.9


User provided reference genes

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