Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 1.4e-136 489.6 238 100.0
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 7.5e-66 254.6 191 69.1
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 9.2e-64 247.7 177 71.8
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 2.1e-44 183.3 188 53.2
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 2.1e-44 183.3 183 55.7
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 2.1e-44 183.3 181 54.7
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 2.8e-44 183.0 183 55.2
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 2.8e-44 183.0 183 55.2
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 2.3e-43 179.9 186 53.2
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.3e-43 179.9 186 53.2
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.3e-43 179.9 186 53.2
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.3e-43 179.9 186 53.2
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 3.1e-43 179.5 216 49.5
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 3.1e-43 179.5 216 49.5
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 3.1e-43 179.5 188 53.2
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 3.1e-43 179.5 207 51.7
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 3.1e-43 179.5 229 47.2
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 4.0e-43 179.1 183 55.2
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 4.0e-43 179.1 185 53.5
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 4.0e-43 179.1 186 54.3
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 5.2e-43 178.7 188 52.7
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 6.8e-43 178.3 236 45.3
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 6.8e-43 178.3 182 54.9
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 2.6e-42 176.4 231 45.9
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 3.4e-42 176.0 187 51.9
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 4.4e-42 175.6 226 47.3
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 4.4e-42 175.6 185 53.0
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 1.3e-41 174.1 188 51.6
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 2.2e-41 173.3 231 45.0
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 2.9e-41 172.9 241 45.6
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.9e-41 172.9 234 46.2
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 2.9e-41 172.9 182 52.2
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 6.4e-41 171.8 184 51.6
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 1.9e-40 170.2 231 46.3
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 1.9e-40 170.2 227 46.3
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 3.2e-40 169.5 232 45.7
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 5.4e-40 168.7 186 51.6
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 7.1e-40 168.3 206 50.0
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 9.2e-40 167.9 232 45.3
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 9.2e-40 167.9 181 52.5
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 9.2e-40 167.9 184 51.6
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 1.2e-39 167.5 239 43.5
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 1.6e-39 167.2 231 45.9
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 1.6e-39 167.2 239 46.9
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 1.6e-39 167.2 240 44.6
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 4.6e-39 165.6 225 47.1
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 4.6e-39 165.6 233 44.6
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 6.0e-39 165.2 182 52.7
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 1.0e-38 164.5 190 50.5
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 1.0e-38 164.5 238 45.0
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.7e-38 163.7 228 45.2
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 1.7e-38 163.7 232 46.6
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 3.0e-38 162.9 228 45.6
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 3.0e-38 162.9 253 42.3
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 8.6e-38 161.4 228 44.7
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 8.6e-38 161.4 184 51.6
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.1e-37 161.0 189 51.3
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 1.1e-37 161.0 181 52.5
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 1.1e-37 161.0 209 47.8
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 1.5e-37 160.6 182 50.0
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 1.5e-37 160.6 237 44.7
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 1.5e-37 160.6 241 44.0
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.9e-37 160.2 189 50.8
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 2.5e-37 159.8 183 51.9
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 4.3e-37 159.1 208 46.2
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 5.6e-37 158.7 226 44.7
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 7.3e-37 158.3 176 50.6
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 7.3e-37 158.3 203 47.3
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 1.2e-36 157.5 224 43.8
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 1.6e-36 157.1 155 54.8
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 2.1e-36 156.8 189 47.6
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 2.1e-36 156.8 186 51.1
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 3.6e-36 156.0 195 49.2
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 3.6e-36 156.0 199 49.2
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 4.7e-36 155.6 185 50.3
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 4.7e-36 155.6 220 43.6
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 6.2e-36 155.2 215 45.1
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 3.1e-35 152.9 207 45.4
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 4.0e-35 152.5 236 42.4
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 4.0e-35 152.5 280 40.0
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 1.2e-34 151.0 216 44.0
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 1.2e-34 151.0 211 46.4
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 1.2e-34 151.0 226 42.9
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 4.4e-34 149.1 212 45.3
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 9.9e-34 147.9 240 40.4
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 9.9e-34 147.9 181 47.5
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 8.4e-33 144.8 207 45.4
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 8.4e-33 144.8 207 45.4
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 8.4e-33 144.8 207 45.4
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 2.4e-32 143.3 187 49.2
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 3.2e-32 142.9 206 47.6
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 3.2e-32 142.9 206 47.6
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 7.1e-32 141.7 215 44.2
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 3.5e-31 139.4 182 46.2
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 3.5e-31 139.4 207 43.0
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 4.6e-31 139.0 207 44.0
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 4.6e-31 139.0 190 46.3
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 2.3e-30 136.7 253 40.3
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 9.6e-29 131.3 232 39.7
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 2.8e-28 129.8 196 42.3
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 8.1e-28 128.3 232 38.8
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 1.1e-27 127.9 198 43.9
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 1.8e-27 127.1 213 40.8
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.0e-26 123.6 211 38.9
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 4.4e-26 122.5 228 37.7
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 5.4e-24 115.5 209 40.2
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 1.6e-23 114.0 151 45.0
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 3.5e-23 112.8 151 45.0
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 1.5e-21 107.5 252 38.1
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 2.4e-19 100.1 123 50.4
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 2.4e-19 100.1 151 40.4
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 9.0e-19 98.2 209 38.8
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 9.0e-19 98.2 123 46.3
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 2.0e-18 97.1 393 27.7
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 2.0e-18 97.1 176 39.8
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 3.4e-18 96.3 206 36.4
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 4.9e-17 92.4 256 35.5
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 8.4e-17 91.7 162 40.1
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 1.5e-13 80.9 176 33.0
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 9.6e-13 78.2 50 70.0
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 8.1e-12 75.1 131 39.7
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 2.4e-11 73.6 61 59.0
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 9.0e-11 71.6 159 36.5
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 9.0e-11 71.6 59 62.7
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 5.8e-10 68.9 55 58.2
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 7.6e-10 68.6 124 39.5
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 2.1e-07 60.5 130 36.2
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 5.1e-06 55.8 75 41.3
CBR_g33995 Chara braunii HOM05D006128 ORTHO05D007466 5.1e-06 55.8 117 33.3


User provided reference genes

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