Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb339980 Zea mays HOM05D005976 ORTHO05D007149 2.3e-193 678.7 347 100.0
Zm00001eb055070 Zea mays HOM05D005976 ORTHO05D007149 5.1e-188 661.0 347 97.7
Zm00001eb252650 Zea mays HOM05D005976 ORTHO05D007149 6.0e-165 584.3 301 99.7
Zm00001eb188960 Zea mays HOM05D002434 ORTHO05D007149 1.4e-150 536.6 301 92.4
Os02g0714500 Oryza sativa ssp. japonica HOM05D005976 ORTHO05D007149 4.2e-126 455.3 298 79.5
Zm00001eb425900 Zea mays HOM05D005976 ORTHO05D007149 4.5e-120 435.3 224 100.0
TAR381G0142 Trochodendron aralioides HOM05D005976 ORTHO05D007149 8.3e-82 308.1 289 55.0
MBI04_g31209_MAGBIO Magnolia biondii HOM05D005976 ORTHO05D007149 2.7e-80 303.1 271 57.9
PSO675G7053 Papaver somniferum HOM05D005976 ORTHO05D007149 4.3e-78 295.8 281 56.2
Sabra11G0129800 Salix brachista HOM05D005976 ORTHO05D007149 3.6e-77 292.7 304 52.3
GSVIVG01026446001 Vitis vinifera HOM05D005976 ORTHO05D007149 3.6e-77 292.7 304 53.0
Potri.011G144700 Populus trichocarpa HOM05D005976 ORTHO05D007149 1.1e-76 291.2 304 52.3
Atru.chr3.58 Acer truncatum HOM05D005976 ORTHO05D007149 1.8e-76 290.4 310 51.9
QL10p048872 Quercus lobata HOM05D005976 ORTHO05D007149 3.1e-76 289.7 312 50.0
Hma1.2p1_0085F.1_g044370 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 4.0e-76 289.3 307 51.5
Hma1.2p1_0085F.1_g044380 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 4.0e-76 289.3 307 51.5
Dinv40218 Davidia involucrata HOM05D005976 ORTHO05D007149 8.9e-76 288.1 289 51.9
Nn6g31621 Nelumbo nucifera HOM05D005976 ORTHO05D007149 2.0e-75 287.0 283 53.0
CiPaw.06G032800 Carya illinoinensis HOM05D005976 ORTHO05D007149 3.4e-75 286.2 312 48.4
Lalb_Chr16g0391711 Lupinus albus HOM05D005976 ORTHO05D007149 3.4e-75 286.2 311 47.9
Aqoxy6G02993 Aquilegia oxysepala HOM05D005976 ORTHO05D007149 4.4e-75 285.8 272 54.4
Haze_03641 Corylus avellana HOM05D005976 ORTHO05D007149 4.4e-75 285.8 304 50.3
Glyma.09G196100 Glycine max HOM05D005976 ORTHO05D007149 5.8e-75 285.4 289 50.9
Manes.02G116600 Manihot esculenta HOM05D005976 ORTHO05D007149 5.8e-75 285.4 298 50.7
Ca_22438_v3 Cicer arietinum L. HOM05D005976 ORTHO05D007149 2.2e-74 283.5 311 48.2
Cfa007111 Carpinus fangiana HOM05D005976 ORTHO05D007149 3.7e-74 282.7 304 50.3
Actinidia28755 Actinidia chinensis HOM05D005976 ORTHO05D007149 4.9e-74 282.3 290 52.8
Medtr8g072710 Medicago truncatula HOM05D005976 ORTHO05D007149 8.3e-74 281.6 311 47.9
TPR.G27924 Trifolium pratense HOM05D005976 ORTHO05D007149 8.3e-74 281.6 311 47.9
Lj4A240G31 Lonicera japonica HOM05D005976 ORTHO05D007149 1.1e-73 281.2 312 49.0
Glyma.16G112900 Glycine max HOM05D005976 ORTHO05D007149 1.4e-73 280.8 313 48.9
Phvul.003G271600 Phaseolus vulgaris HOM05D005976 ORTHO05D007149 1.4e-73 280.8 312 48.1
MD15G1228100 Malus domestica HOM05D005976 ORTHO05D007149 1.9e-73 280.4 300 50.7
CDE06G1894 Ceratophyllum demersum HOM05D005976 ORTHO05D007149 5.4e-73 278.9 272 54.8
AL8G45690 Arabidopsis lyrata HOM05D005976 ORTHO05D007149 1.6e-72 277.3 323 49.2
Lj4g0003913 Lotus japonicus HOM05D005976 ORTHO05D007149 2.1e-72 276.9 311 46.9
RcHm_v2.0_Chr2g0096791 Rosa chinensis HOM05D005976 ORTHO05D007149 2.1e-72 276.9 274 54.4
Aa31LG1G14470 Aethionema arabicum HOM05D005976 ORTHO05D007149 2.7e-72 276.6 289 50.9
Psat4g106360 Pisum sativum HOM05D005976 ORTHO05D007149 3.5e-72 276.2 310 46.5
FAN26G2461 Fragaria x ananassa HOM05D005976 ORTHO05D007149 4.6e-72 275.8 283 53.0
FvH4_1g10000 Fragaria vesca HOM05D005976 ORTHO05D007149 7.8e-72 275.0 306 50.7
FAN23G1414 Fragaria x ananassa HOM05D005976 ORTHO05D007149 7.8e-72 275.0 279 53.4
Thecc.01G002100 Theobroma cacao HOM05D005976 ORTHO05D007149 7.8e-72 275.0 305 49.8
ATR0605G043 Amborella trichopoda HOM05D005976 ORTHO05D007149 1.0e-71 274.6 295 50.2
VMungo0251G2412 Vigna mungo HOM05D005976 ORTHO05D007149 1.0e-71 274.6 296 49.3
vmacro18477 Vaccinium macrocarpon HOM05D005976 ORTHO05D007149 1.3e-71 274.2 305 49.5
CARHR281820 Cardamine hirsuta HOM05D005976 ORTHO05D007149 1.7e-71 273.9 306 50.0
DCAR_014120 Daucus carota HOM05D005976 ORTHO05D007149 1.7e-71 273.9 315 47.3
TWI73G0718 Tripterygium wilfordii HOM05D005976 ORTHO05D007149 3.0e-71 273.1 312 47.1
FAN28G0094 Fragaria x ananassa HOM05D005976 ORTHO05D007149 3.9e-71 272.7 283 53.0
Prupe.7G186800 Prunus persica HOM05D005976 ORTHO05D007149 3.9e-71 272.7 306 50.0
COL.COLO4_25046 Corchorus olitorius HOM05D005976 ORTHO05D007149 8.6e-71 271.6 301 51.2
FAN19G1634 Fragaria x ananassa HOM05D005976 ORTHO05D007149 8.6e-71 271.6 283 52.7
AT5G65950 Arabidopsis thaliana HOM05D005976 ORTHO05D007149 1.1e-70 271.2 291 50.9
Peaxi162Scf00677g00223 Petunia axillaris HOM05D005976 ORTHO05D007149 1.1e-70 271.2 312 47.8
BolC3t21644H Brassica oleracea HOM05D005976 ORTHO05D007149 1.5e-70 270.8 289 51.6
Thhalv10003539m.g Eutrema salsugineum HOM05D005976 ORTHO05D007149 1.9e-70 270.4 305 49.2
BcaNung06215 Brassica carinata HOM05D005976 ORTHO05D007149 2.5e-70 270.0 289 51.2
Sp2g30740 Schrenkiella parvula HOM05D005976 ORTHO05D007149 3.3e-70 269.6 290 51.7
AUR62003719 Chenopodium quinoa HOM05D005976 ORTHO05D007149 5.6e-70 268.9 307 47.2
Nitab4.5_0011596g0010 Nicotiana tabacum HOM05D005976 ORTHO05D007149 5.6e-70 268.9 312 47.1
Oeu021989.1 Olea europaea HOM05D005976 ORTHO05D007149 5.6e-70 268.9 286 49.0
arahy.Tifrunner.gnm1.ann1.8BHC3E Arachis hypogaea HOM05D005976 ORTHO05D007149 1.6e-69 267.3 299 47.5
arahy.Tifrunner.gnm1.ann1.2S25M9 Arachis hypogaea HOM05D005976 ORTHO05D007149 2.1e-69 266.9 300 47.3
Gohir.A07G172300 Gossypium hirsutum HOM05D005976 ORTHO05D007149 2.1e-69 266.9 304 47.0
AUR62018030 Chenopodium quinoa HOM05D005976 ORTHO05D007149 3.6e-69 266.2 307 46.9
Nitab4.5_0000855g0090 Nicotiana tabacum HOM05D005976 ORTHO05D007149 1.1e-68 264.6 315 46.7
A08p00020 Brassica napus HOM05D005976 ORTHO05D007149 1.4e-68 264.2 305 48.5
BraA08t32059Z Brassica rapa HOM05D005976 ORTHO05D007149 1.4e-68 264.2 305 48.5
Gorai.001G200200 Gossypium raimondii HOM05D005976 ORTHO05D007149 1.4e-68 264.2 304 47.0
Rhsim08G0025900 Rhododendron simsii HOM05D005976 ORTHO05D007149 1.4e-68 264.2 281 50.9
PGSC0003DMG402013639 Solanum tuberosum HOM05D005976 ORTHO05D007149 2.4e-68 263.5 312 45.8
Eucgr.I02203 Eucalyptus grandis HOM05D005976 ORTHO05D007149 3.1e-68 263.1 274 51.1
Solyc02g082280.3 Solanum lycopersicum HOM05D005976 ORTHO05D007149 6.8e-68 261.9 312 45.5
Carub.0008s2857 Capsella rubella HOM05D005976 ORTHO05D007149 8.9e-68 261.5 324 46.9
Lsat_1_v5_gn_8_114080 Lactuca sativa HOM05D005976 ORTHO05D007149 1.2e-67 261.2 292 48.6
Sopen02g026940 Solanum pennellii HOM05D005976 ORTHO05D007149 1.2e-67 261.2 312 45.5
Duzib147G1500 Durio zibethinus HOM05D005976 ORTHO05D007149 2.6e-67 260.0 295 47.1
Gohir.D07G179000 Gossypium hirsutum HOM05D005976 ORTHO05D007149 4.4e-67 259.2 304 46.4
CAN.G1428.10 Capsicum annuum HOM05D005976 ORTHO05D007149 5.8e-67 258.8 312 45.8
Cc07_g12200 Coffea canephora HOM05D005976 ORTHO05D007149 1.3e-66 257.7 293 47.1
SalBow2G0432 Salvia bowleyana HOM05D005976 ORTHO05D007149 1.3e-66 257.7 274 50.0
PGR119G1871 Punica granatum HOM05D005976 ORTHO05D007149 2.2e-66 256.9 277 48.4
THA.LOC104819155 Tarenaya hassleriana HOM05D005976 ORTHO05D007149 2.9e-66 256.5 305 46.6
HanXRQChr09g0259071 Helianthus annuus HOM05D005976 ORTHO05D007149 3.8e-66 256.1 286 48.3
Hund19685 Selenicereus undatus HOM05D005976 ORTHO05D007149 3.2e-65 253.1 280 49.3
Sc03g0004130 Simmondsia chinensis HOM05D005976 ORTHO05D007149 9.3e-65 251.5 307 45.0
Ah.02g123200 Amaranthus hybridus HOM05D005976 ORTHO05D007149 1.2e-64 251.1 308 44.5
ECA232G3572 Erigeron canadensis HOM05D005976 ORTHO05D007149 1.2e-64 251.1 289 46.4
MSTRG.18885 Avicennia marina HOM05D005976 ORTHO05D007149 7.8e-64 248.4 294 46.6
EL10Ac6g15029 Beta vulgaris HOM05D005976 ORTHO05D007149 2.3e-63 246.9 312 43.9
Migut.D02574 Erythranthe guttata HOM05D005976 ORTHO05D007149 5.1e-63 245.7 302 45.7
SGA_v2.0_scaffold6G03353 Striga asiatica HOM05D005976 ORTHO05D007149 1.3e-61 241.1 305 45.2
Cpa.g.sc365.8 Carica papaya HOM05D005976 ORTHO05D007149 3.6e-61 239.6 266 50.8
unitig_746.g26634 Utricularia gibba HOM05D005976 ORTHO05D007149 4.8e-61 239.2 300 45.3
CsaV3_6G047940 Cucumis sativus L. HOM05D005976 ORTHO05D007149 2.4e-60 236.9 303 44.2
MELO3C007982.2 Cucumis melo HOM05D005976 ORTHO05D007149 1.2e-59 234.6 303 43.6
SEGI_34852 Sequoiadendron giganteum HOM05D005976 ORTHO05D007149 1.5e-59 234.2 287 43.6
ClCG01G020980 Citrullus lanatus HOM05D005976 ORTHO05D007149 7.6e-59 231.9 300 44.3
Sed0007938 Sechium edule HOM05D005976 ORTHO05D007149 3.8e-58 229.6 303 44.6
Ciclev10026942m.g Citrus clementina HOM05D005976 ORTHO05D007149 7.1e-57 225.3 286 45.5
Sed0007865 Sechium edule HOM05D005976 ORTHO05D007149 7.1e-57 225.3 301 42.5
Potri.001G457201 Populus trichocarpa HOM05D005976 ORTHO05D007149 1.5e-51 207.6 247 50.2
HPP92_022739 Vanilla planifolia HOM05D005976 ORTHO05D007149 1.4e-49 201.1 215 51.6
SHI19208 Sapria himalayana HOM05D005976 ORTHO05D007149 6.0e-48 195.7 264 40.5
Mapoly0077s0054 Marchantia polymorpha HOM05D005976 ORTHO05D007149 4.3e-46 189.5 284 38.0
AagrBONN_evm.TU.Sc2ySwM_117.3206 Anthoceros agrestis HOM05D005976 ORTHO05D007149 7.4e-46 188.7 347 36.3
Mapoly0075s0041 Marchantia polymorpha HOM05D005976 ORTHO05D007149 9.6e-46 188.3 306 35.9
Migut.D02599 Erythranthe guttata HOM05D005976 ORTHO05D007149 1.3e-39 167.9 302 36.4
Pp3c17_22570 Physcomitrium patens HOM05D005976 ORTHO05D007149 1.3e-39 167.9 265 39.2
FAN23G1168 Fragaria x ananassa HOM05D005976 ORTHO05D007149 6.9e-36 155.6 128 60.9
SMO144G0134 Selaginella moellendorffii HOM05D005976 ORTHO05D007149 5.0e-34 149.4 238 39.5
CBR_g24120 Chara braunii HOM05D005976 ORTHO05D007149 5.3e-28 129.4 261 31.4
Hund03584 Selenicereus undatus HOM05D005976 ORTHO05D007149 7.9e-16 89.0 91 51.6
MCO16G661 Micromonas commoda HOM05D005976 ORTHO05D007149 2.6e-11 73.9 138 33.3
Cre17.g729700 Chlamydomonas reinhardtii HOM05D005976 ORTHO05D007149 5.2e-07 59.7 138 34.1


User provided reference genes

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