Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb338730 Zea mays HOM05D000275 ORTHO05D049927 1.7e-48 196.1 127 100.0
Os01g0219500 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D049927 5.5e-31 137.9 98 72.4
Hund03716 Selenicereus undatus HOM05D000275 ORTHO05D000181 1.8e-10 69.7 95 41.1
Hund24418 Selenicereus undatus HOM05D000275 ORTHO05D000181 1.8e-10 69.7 95 42.1
CAN.G1018.8 Capsicum annuum HOM05D000275 ORTHO05D000181 4.1e-10 68.6 94 43.6
Hund24417 Selenicereus undatus HOM05D000275 ORTHO05D000181 1.2e-09 67.0 93 40.9
Hund28933 Selenicereus undatus HOM05D000275 ORTHO05D000181 1.2e-09 67.0 93 40.9
CAN.G502.32 Capsicum annuum HOM05D000275 ORTHO05D000181 1.5e-09 66.6 97 41.2
PGR004G0594 Punica granatum HOM05D000275 ORTHO05D000181 1.5e-09 66.6 95 43.2
AUR62029720 Chenopodium quinoa HOM05D000275 ORTHO05D000181 3.4e-09 65.5 93 39.8
CAN.G619.34 Capsicum annuum HOM05D000275 ORTHO05D000181 4.5e-09 65.1 92 43.5
COL.COLO4_12419 Corchorus olitorius HOM05D000275 ORTHO05D000181 5.9e-09 64.7 94 42.6
Gohir.D10G116300 Gossypium hirsutum HOM05D000275 ORTHO05D000181 5.9e-09 64.7 95 41.1
Sopen10g027540 Solanum pennellii HOM05D000275 ORTHO05D000181 5.9e-09 64.7 93 41.9
SGA_v2.0_scaffold59G20687 Striga asiatica HOM05D000275 ORTHO05D000181 5.9e-09 64.7 94 39.4
MELO3C009108.2 Cucumis melo HOM05D000275 ORTHO05D000181 7.7e-09 64.3 95 40.0
Hund19774 Selenicereus undatus HOM05D000275 ORTHO05D000181 7.7e-09 64.3 95 38.9
AUR62006381 Chenopodium quinoa HOM05D000275 ORTHO05D000181 1.0e-08 63.9 95 37.9
Os06g0539500 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 1.0e-08 63.9 93 41.9
CAN.G345.6 Capsicum annuum HOM05D000275 ORTHO05D000181 1.3e-08 63.5 92 43.5
Gohir.A10G150100 Gossypium hirsutum HOM05D000275 ORTHO05D000181 1.3e-08 63.5 92 42.4
Gohir.A10G150200 Gossypium hirsutum HOM05D000275 ORTHO05D000181 1.7e-08 63.2 92 42.4
Gohir.D10G116200 Gossypium hirsutum HOM05D000275 ORTHO05D000181 2.2e-08 62.8 92 42.4
PGSC0003DMG400012838 Solanum tuberosum HOM05D000275 ORTHO05D000181 2.2e-08 62.8 93 40.9
Gohir.D10G116400 Gossypium hirsutum HOM05D000275 ORTHO05D000181 3.8e-08 62.0 93 34.4
Gorai.011G128300 Gossypium raimondii HOM05D000275 ORTHO05D000181 3.8e-08 62.0 93 34.4
Nitab4.5_0000508g0230 Nicotiana tabacum HOM05D000275 ORTHO05D000181 3.8e-08 62.0 94 34.0
Prupe.2G000900 Prunus persica HOM05D000275 ORTHO05D000181 3.8e-08 62.0 95 38.9
Ah.08g209500 Amaranthus hybridus HOM05D000275 ORTHO05D000181 5.0e-08 61.6 94 38.3
Nitab4.5_0002140g0060 Nicotiana tabacum HOM05D000275 ORTHO05D000181 5.0e-08 61.6 95 34.7
Zm00001eb406100 Zea mays HOM05D000275 ORTHO05D000181 5.0e-08 61.6 95 41.1
Gorai.011G128100 Gossypium raimondii HOM05D000275 ORTHO05D000181 6.5e-08 61.2 91 41.8
HanXRQChr01g0018461 Helianthus annuus HOM05D000275 ORTHO05D000181 6.5e-08 61.2 96 37.5
PSO339G5510 Papaver somniferum HOM05D000275 ORTHO05D000181 6.5e-08 61.2 93 37.6
Thecc.04G152600 Theobroma cacao HOM05D000275 ORTHO05D000181 6.5e-08 61.2 90 38.9
Manes.14G166500 Manihot esculenta HOM05D000275 ORTHO05D000181 8.5e-08 60.8 95 36.8
Nitab4.5_0001711g0040 Nicotiana tabacum HOM05D000275 ORTHO05D000181 8.5e-08 60.8 93 39.8
Nitab4.5_0001711g0010 Nicotiana tabacum HOM05D000275 ORTHO05D000181 1.1e-07 60.5 92 40.2
Nitab4.5_0001711g0050 Nicotiana tabacum HOM05D000275 ORTHO05D000181 1.1e-07 60.5 92 40.2
Nitab4.5_0001711g0060 Nicotiana tabacum HOM05D000275 ORTHO05D000181 1.1e-07 60.5 92 40.2
Lsat_1_v5_gn_1_89881 Lactuca sativa HOM05D000275 ORTHO05D000181 1.4e-07 60.1 95 36.8
Psat7g234080 Pisum sativum HOM05D000275 ORTHO05D000181 1.4e-07 60.1 93 35.5
Potri.009G025200 Populus trichocarpa HOM05D000275 ORTHO05D000181 1.4e-07 60.1 96 36.5
Lalb_Chr01g0023711 Lupinus albus HOM05D000275 ORTHO05D000181 2.5e-07 59.3 94 35.1
Potri.001G232700 Populus trichocarpa HOM05D000275 ORTHO05D000181 2.5e-07 59.3 96 33.3
PGR031G1872 Punica granatum HOM05D000275 ORTHO05D000181 2.5e-07 59.3 95 35.8
Sp4g20870 Schrenkiella parvula HOM05D000275 ORTHO05D000181 2.5e-07 59.3 95 40.0
Duzib268G1181 Durio zibethinus HOM05D000275 ORTHO05D000181 3.2e-07 58.9 92 40.2
Lalb_Chr06g0169701 Lupinus albus HOM05D000275 ORTHO05D000181 3.2e-07 58.9 96 35.4
Zm00001eb163910 Zea mays HOM05D000275 ORTHO05D000181 3.2e-07 58.9 95 38.9
QL04p000796 Quercus lobata HOM05D000275 ORTHO05D000181 4.2e-07 58.5 95 34.7
Zm00001eb163880 Zea mays HOM05D000275 ORTHO05D000181 4.2e-07 58.5 96 36.5
CiPaw.15G186600 Carya illinoinensis HOM05D000275 ORTHO05D000181 5.5e-07 58.2 95 36.8
DCAR_015724 Daucus carota HOM05D000275 ORTHO05D000181 5.5e-07 58.2 96 37.5
Nitab4.5_0000046g0200 Nicotiana tabacum HOM05D000275 ORTHO05D000181 5.5e-07 58.2 99 34.3
PSO017G5552 Papaver somniferum HOM05D000275 ORTHO05D000181 5.5e-07 58.2 93 40.9
TWI74G0903 Tripterygium wilfordii HOM05D000275 ORTHO05D000181 5.5e-07 58.2 95 37.9
Duzib138G0524 Durio zibethinus HOM05D000275 ORTHO05D000181 7.2e-07 57.8 94 39.4
Os11g0115350 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 7.2e-07 57.8 95 35.8
PGR031G0583 Punica granatum HOM05D000275 ORTHO05D000181 7.2e-07 57.8 95 35.8
PGSC0003DMG400025537 Solanum tuberosum HOM05D000275 ORTHO05D000181 7.2e-07 57.8 97 34.0
ATR1127G138 Amborella trichopoda HOM05D000275 ORTHO05D000181 9.4e-07 57.4 93 35.5
Medtr7g072993 Medicago truncatula HOM05D000275 ORTHO05D000181 9.4e-07 57.4 95 34.7
Sabra09G0016700 Salix brachista HOM05D000275 ORTHO05D000181 9.4e-07 57.4 96 34.4
Hund19773 Selenicereus undatus HOM05D000275 ORTHO05D000181 9.4e-07 57.4 95 35.8
BraA04t18413Z Brassica rapa HOM05D000275 ORTHO05D000181 1.2e-06 57.0 94 38.3
CSS0044170 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D000181 1.2e-06 57.0 96 35.4
Dinv33752 Davidia involucrata HOM05D000275 ORTHO05D000181 1.2e-06 57.0 94 41.5
Dinv43951 Davidia involucrata HOM05D000275 ORTHO05D000181 1.2e-06 57.0 96 35.4
Solyc08g067500.1 Solanum lycopersicum HOM05D000275 ORTHO05D000181 1.2e-06 57.0 97 34.0
Sopen08g021440 Solanum pennellii HOM05D000275 ORTHO05D000181 1.2e-06 57.0 97 34.0
Atru.chr8.2397 Acer truncatum HOM05D000275 ORTHO05D000181 1.6e-06 56.6 95 35.8
Ah.08g209470 Amaranthus hybridus HOM05D000275 ORTHO05D000181 1.6e-06 56.6 97 35.1
BcaC02g07458 Brassica carinata HOM05D000275 ORTHO05D000181 1.6e-06 56.6 95 37.9
Cfa010681 Carpinus fangiana HOM05D000275 ORTHO05D000181 1.6e-06 56.6 92 35.9
MD00G1187200 Malus domestica HOM05D000275 ORTHO05D000181 1.6e-06 56.6 95 34.7
Potri.001G232900 Populus trichocarpa HOM05D000275 ORTHO05D000181 1.6e-06 56.6 96 32.3
QL07p032189 Quercus lobata HOM05D000275 ORTHO05D000181 1.6e-06 56.6 96 37.5
AUR62029724 Chenopodium quinoa HOM05D000275 ORTHO05D000181 2.1e-06 56.2 93 37.6
CANSAT35G1507 Cannabis sativa HOM05D000275 ORTHO05D000181 2.7e-06 55.8 93 39.8
Gohir.D08G068000 Gossypium hirsutum HOM05D000275 ORTHO05D000181 2.7e-06 55.8 95 36.8
Os12g0115000 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 2.7e-06 55.8 94 35.1
SGA_v2.0_scaffold341G49371 Striga asiatica HOM05D000275 ORTHO05D000181 2.7e-06 55.8 90 37.8
TAR623G0763 Trochodendron aralioides HOM05D000275 ORTHO05D000181 2.7e-06 55.8 96 35.4
A04p29460 Brassica napus HOM05D000275 ORTHO05D000181 3.6e-06 55.5 93 38.7
C04p66750 Brassica napus HOM05D000275 ORTHO05D000181 3.6e-06 55.5 94 37.2
Gorai.004G071100 Gossypium raimondii HOM05D000275 ORTHO05D000181 3.6e-06 55.5 95 36.8
Manes.02G187100 Manihot esculenta HOM05D000275 ORTHO05D000181 3.6e-06 55.5 94 38.3
Medtr1g040335 Medicago truncatula HOM05D000275 ORTHO05D000181 3.6e-06 55.5 95 36.8
Os11g0427800 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 3.6e-06 55.5 93 36.6
CAN.G345.7 Capsicum annuum HOM05D000275 ORTHO05D000181 4.7e-06 55.1 91 39.6
ClCG10G022680 Citrullus lanatus HOM05D000275 ORTHO05D000181 4.7e-06 55.1 95 35.8
Lalb_Chr10g0106431 Lupinus albus HOM05D000275 ORTHO05D000181 4.7e-06 55.1 91 36.3
Os11g0115400 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 4.7e-06 55.1 94 35.1
Solyc10g075060.2 Solanum lycopersicum HOM05D000275 ORTHO05D000181 4.7e-06 55.1 91 38.5
Cpa.g.sc157.28 Carica papaya HOM05D000275 ORTHO05D000181 6.1e-06 54.7 93 35.5
Glyma.09G275500 Glycine max HOM05D000275 ORTHO05D000181 6.1e-06 54.7 95 34.7
Os12g0115100 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 6.1e-06 54.7 94 35.1
QL09p053525 Quercus lobata HOM05D000275 ORTHO05D000181 6.1e-06 54.7 96 36.5
RcHm_v2.0_Chr1g0347601 Rosa chinensis HOM05D000275 ORTHO05D000181 6.1e-06 54.7 92 38.0
AUR62006385 Chenopodium quinoa HOM05D000275 ORTHO05D000181 7.9e-06 54.3 93 36.6
Peaxi162Scf01238g00223 Petunia axillaris HOM05D000275 ORTHO05D000181 7.9e-06 54.3 93 38.7


User provided reference genes

Program Settings