Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 2.5e-169 598.6 283 100.0
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 2.4e-63 246.5 256 48.0
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 3.6e-43 179.5 256 38.7
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 6.2e-43 178.7 258 38.8
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 3.1e-42 176.4 252 38.1
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 5.3e-42 175.6 252 37.3
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 5.3e-42 175.6 257 38.1
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.2e-41 174.5 252 37.3
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.0e-41 173.7 252 36.9
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.0e-41 173.7 252 36.9
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 2.0e-41 173.7 258 37.2
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 3.4e-41 172.9 257 39.7
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 5.8e-41 172.2 252 36.9
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 5.8e-41 172.2 257 38.9
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 2.2e-40 170.2 257 39.3
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 8.4e-40 168.3 275 37.5
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 1.1e-39 167.9 256 37.1
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 1.4e-39 167.5 256 35.9
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 9.3e-39 164.9 268 35.8
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 1.2e-38 164.5 252 36.1
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 1.6e-38 164.1 253 36.8
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 2.1e-38 163.7 277 35.7
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 2.1e-38 163.7 256 34.0
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 2.7e-38 163.3 260 37.7
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 2.7e-38 163.3 258 34.5
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 2.7e-38 163.3 253 36.4
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 2.7e-38 163.3 256 36.3
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 2.7e-38 163.3 256 36.3
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 3.5e-38 162.9 257 35.0
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 3.5e-38 162.9 252 35.7
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 3.5e-38 162.9 257 37.4
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 4.6e-38 162.5 256 36.7
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 4.6e-38 162.5 260 36.2
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 6.0e-38 162.2 252 36.5
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 7.9e-38 161.8 255 35.3
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 7.9e-38 161.8 257 38.5
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 7.9e-38 161.8 256 37.9
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 1.0e-37 161.4 258 38.4
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 1.3e-37 161.0 270 37.0
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 1.8e-37 160.6 254 33.1
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 1.8e-37 160.6 259 35.9
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 3.0e-37 159.8 252 35.3
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 1.5e-36 157.5 256 36.3
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 1.9e-36 157.1 262 33.6
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 1.9e-36 157.1 256 36.3
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 3.3e-36 156.4 255 34.9
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 4.3e-36 156.0 286 33.2
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 5.6e-36 155.6 256 34.4
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 7.4e-36 155.2 250 33.2
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 7.4e-36 155.2 268 34.0
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 7.4e-36 155.2 268 34.0
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 9.6e-36 154.8 256 35.5
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 9.6e-36 154.8 261 34.5
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 9.6e-36 154.8 190 38.4
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 2.1e-35 153.7 254 32.7
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 3.7e-35 152.9 255 32.5
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 3.7e-35 152.9 256 36.3
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 6.2e-35 152.1 254 32.7
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 8.1e-35 151.8 258 32.2
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 1.1e-34 151.4 252 32.5
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 1.1e-34 151.4 256 34.4
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 1.4e-34 151.0 258 32.9
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 1.4e-34 151.0 254 33.5
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 1.8e-34 150.6 252 32.9
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 2.4e-34 150.2 262 31.7
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 2.4e-34 150.2 262 32.1
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 5.3e-34 149.1 268 33.2
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 6.9e-34 148.7 201 38.3
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 9.0e-34 148.3 254 34.6
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 1.2e-33 147.9 270 33.3
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 2.0e-33 147.1 252 33.7
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 2.6e-33 146.7 254 32.3
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 2.6e-33 146.7 258 32.9
Zm00001eb119810 Zea mays HOM05D000590 ORTHO05D006825 4.5e-33 146.0 75 86.7
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 5.8e-33 145.6 252 34.5
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 5.8e-33 145.6 254 31.9
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 1.7e-32 144.1 205 36.6
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 1.7e-32 144.1 276 34.1
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 2.2e-32 143.7 205 34.1
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 4.9e-32 142.5 254 31.9
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 6.4e-32 142.1 255 32.9
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 3.2e-31 139.8 197 37.6
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 4.2e-31 139.4 281 29.2
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 1.6e-30 137.5 261 31.0
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 2.1e-30 137.1 275 32.0
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 4.6e-30 136.0 177 36.7
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 1.8e-29 134.0 194 35.6
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 1.5e-28 131.0 259 29.7
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 1.9e-28 130.6 259 30.1
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 3.3e-28 129.8 191 40.3
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 5.6e-28 129.0 252 33.7
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 5.6e-28 129.0 258 34.1
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 1.3e-27 127.9 241 34.9
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 2.1e-27 127.1 253 31.6
Oeu004946.1 Olea europaea HOM05D000590 ORTHO05D006825 1.4e-26 124.4 252 31.7
Zm00001eb197190 Zea mays HOM05D002169 ORTHO05D023180 9.0e-26 121.7 99 66.7
Pp3c6_8570 Physcomitrium patens HOM05D000590 ORTHO05D006825 1.0e-24 118.2 257 32.3
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.0e-24 118.2 164 38.4
Thecc.01G343200 Theobroma cacao HOM05D000590 ORTHO05D006825 1.7e-24 117.5 223 32.7
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 2.9e-24 116.7 264 32.6
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 8.4e-24 115.2 192 31.8
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 8.4e-24 115.2 197 34.0
SMO164G0232 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 5.5e-23 112.5 259 30.9
MBI06_g08454_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006825 9.3e-23 111.7 181 35.4
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 2.1e-22 110.5 255 30.6
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 3.5e-22 109.8 159 33.3
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 5.1e-21 105.9 254 27.2
SMO200G0118 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 5.1e-21 105.9 258 29.8
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 1.5e-20 104.4 232 28.9
PGSC0003DMG400000222 Solanum tuberosum HOM05D000590 ORTHO05D006825 4.3e-20 102.8 224 31.7
Mapoly0251s0003 Marchantia polymorpha HOM05D000590 ORTHO05D006825 6.3e-19 99.0 190 30.5
Glyma.07G056100 Glycine max HOM05D000590 ORTHO05D006825 1.0e-16 91.7 170 31.2
CBR_g49078 Chara braunii HOM05D000590 ORTHO05D006825 6.5e-16 89.0 291 26.1
HanXRQChr09g0243571 Helianthus annuus HOM05D000590 ORTHO05D006825 8.5e-16 88.6 112 38.4
CSS0003243 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 1.1e-15 88.2 140 35.7
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 1.9e-15 87.4 259 29.3
Lalb_Chr10g0100491 Lupinus albus HOM05D000590 ORTHO05D006825 7.2e-15 85.5 163 32.5
CBR_g71803 Chara braunii HOM05D000590 ORTHO05D006825 9.4e-15 85.1 299 25.1
MSTRG.17339 Avicennia marina HOM05D000590 ORTHO05D006825 1.6e-14 84.3 167 30.5
BcaC02g10247 Brassica carinata HOM05D000590 ORTHO05D006825 1.6e-14 84.3 163 31.3
arahy.Tifrunner.gnm1.ann1.AM6JUY Arachis hypogaea HOM05D000590 ORTHO05D006825 3.6e-14 83.2 101 38.6
VMungo0331G1406 Vigna mungo HOM05D000590 ORTHO05D000717 4.6e-14 82.8 163 31.9
TAR375G0589 Trochodendron aralioides HOM05D000590 ORTHO05D006825 3.9e-13 79.7 151 32.5
Zm00001eb304820 Zea mays HOM05D000046 ORTHO05D023180 1.3e-11 74.7 37 94.6
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 4.1e-10 69.7 83 39.8
GSVIVG01027101001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.0e-08 65.1 71 45.1
Lalb_Chr10g0100501 Lupinus albus HOM05D000590 ORTHO05D006825 5.0e-08 62.8 91 36.3
VMungo0331G1881 Vigna mungo HOM05D000590 ORTHO05D006825 5.0e-08 62.8 95 35.8
BolC4t24651H Brassica oleracea HOM05D000590 ORTHO05D006825 4.2e-07 59.7 71 39.4
BcaC02g10248 Brassica carinata HOM05D000590 ORTHO05D006825 2.7e-06 57.0 53 41.5


User provided reference genes

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