Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 1.9e-91 339.3 198 100.0
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 1.1e-75 287.0 153 92.8
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 1.8e-65 253.1 153 79.7
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 1.8e-65 253.1 153 79.7
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 2.4e-65 252.7 151 80.8
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 3.1e-65 252.3 151 80.1
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 4.0e-65 251.9 150 83.3
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 5.3e-65 251.5 153 80.4
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 9.0e-65 250.8 150 80.7
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 1.5e-64 250.0 153 79.7
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 1.5e-64 250.0 153 78.4
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 1.5e-64 250.0 152 81.6
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 1.5e-64 250.0 152 81.6
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 2.0e-64 249.6 151 79.5
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 2.6e-64 249.2 153 79.1
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 2.6e-64 249.2 153 79.7
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 3.4e-64 248.8 148 82.4
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 3.4e-64 248.8 148 82.4
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 3.4e-64 248.8 148 82.4
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 3.4e-64 248.8 153 79.7
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 4.5e-64 248.4 148 81.8
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 4.5e-64 248.4 151 79.5
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 4.5e-64 248.4 153 80.4
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 5.8e-64 248.1 153 79.7
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 7.6e-64 247.7 150 78.7
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 7.6e-64 247.7 150 78.7
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 1.3e-63 246.9 150 78.7
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 1.3e-63 246.9 153 78.4
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 1.7e-63 246.5 153 78.4
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 1.7e-63 246.5 153 78.4
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 1.7e-63 246.5 146 82.9
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 2.2e-63 246.1 153 78.4
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 2.9e-63 245.7 146 82.9
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 4.9e-63 245.0 146 82.9
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 6.5e-63 244.6 146 82.2
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 6.5e-63 244.6 147 81.6
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 6.5e-63 244.6 153 77.8
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 8.4e-63 244.2 153 77.8
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 8.4e-63 244.2 153 77.8
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 1.1e-62 243.8 153 77.8
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 1.1e-62 243.8 153 78.4
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 1.1e-62 243.8 144 84.0
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 1.4e-62 243.4 153 77.1
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 1.9e-62 243.0 153 77.1
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 1.9e-62 243.0 147 81.0
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 2.5e-62 242.7 146 81.5
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 2.5e-62 242.7 147 80.3
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 2.5e-62 242.7 146 81.5
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 2.5e-62 242.7 153 77.1
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 3.2e-62 242.3 153 77.8
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 3.2e-62 242.3 147 80.3
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 3.2e-62 242.3 151 79.5
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 3.2e-62 242.3 153 77.1
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 4.2e-62 241.9 153 76.5
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 4.2e-62 241.9 153 76.5
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 5.5e-62 241.5 153 76.5
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 5.5e-62 241.5 153 76.5
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 5.5e-62 241.5 195 67.2
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 5.5e-62 241.5 151 78.1
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 9.3e-62 240.7 147 79.6
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 9.3e-62 240.7 153 75.8
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 9.3e-62 240.7 147 78.9
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 9.3e-62 240.7 153 76.5
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 9.3e-62 240.7 146 78.8
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 9.3e-62 240.7 197 66.0
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 1.2e-61 240.4 150 76.7
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.6e-61 240.0 153 75.2
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 1.6e-61 240.0 153 76.5
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 1.6e-61 240.0 150 78.0
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 1.6e-61 240.0 150 78.0
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 1.6e-61 240.0 153 75.2
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 2.1e-61 239.6 151 76.8
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 2.1e-61 239.6 153 77.8
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 2.1e-61 239.6 153 75.8
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 2.7e-61 239.2 153 77.1
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 2.7e-61 239.2 153 75.8
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 2.7e-61 239.2 153 76.5
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 2.7e-61 239.2 146 79.5
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 2.7e-61 239.2 195 65.6
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 3.5e-61 238.8 153 75.8
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 3.5e-61 238.8 153 75.8
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 3.5e-61 238.8 153 75.8
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 3.5e-61 238.8 153 75.8
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 3.5e-61 238.8 152 77.0
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 3.5e-61 238.8 153 75.8
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 4.6e-61 238.4 148 78.4
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 6.0e-61 238.0 147 78.9
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 6.0e-61 238.0 147 78.9
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 6.0e-61 238.0 153 76.5
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 7.9e-61 237.7 146 78.8
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 1.0e-60 237.3 153 74.5
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 1.0e-60 237.3 152 75.7
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 1.3e-60 236.9 148 77.7
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 1.3e-60 236.9 150 76.0
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 1.3e-60 236.9 153 75.2
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 3.0e-60 235.7 147 77.6
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 3.0e-60 235.7 146 78.1
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 3.0e-60 235.7 150 75.3
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 3.9e-60 235.3 147 76.9
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 3.9e-60 235.3 147 76.9
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 5.1e-60 235.0 147 75.5
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 6.7e-60 234.6 152 75.0
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 8.7e-60 234.2 146 76.7
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.5e-59 233.4 146 76.0
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 1.5e-59 233.4 148 75.0
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 2.5e-59 232.6 153 71.2
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 5.7e-59 231.5 146 76.0
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 7.4e-59 231.1 146 77.4
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 2.8e-58 229.2 153 73.2
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 3.7e-58 228.8 153 71.9
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 8.2e-58 227.6 153 73.2
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 1.4e-57 226.9 150 72.0
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.8e-57 226.5 153 71.2
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 2.4e-57 226.1 152 72.4
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 6.9e-57 224.6 144 79.2
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 2.0e-56 223.0 137 80.3
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 1.0e-55 220.7 153 69.9
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 5.0e-55 218.4 191 59.7
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 2.1e-53 213.0 153 65.4
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 3.7e-50 202.2 135 72.6
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.4e-49 200.3 158 62.7
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.4e-49 199.5 157 62.4
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 9.0e-49 197.6 141 70.2
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 1.3e-47 193.7 147 68.7
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 3.3e-43 179.1 153 61.4
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 4.5e-40 168.7 108 75.9
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 4.5e-40 168.7 108 76.9
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 1.0e-39 167.5 108 75.0
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 5.0e-39 165.2 108 74.1
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 8.5e-39 164.5 108 75.0
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 8.5e-39 164.5 108 75.0
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 1.4e-38 163.7 108 74.1
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 1.4e-38 163.7 108 74.1
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 3.2e-38 162.5 147 55.1
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 3.2e-38 162.5 147 55.1
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 5.5e-38 161.8 108 73.1
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 4.7e-37 158.7 102 75.5
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 4.7e-37 158.7 102 75.5
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 2.2e-34 149.8 124 64.5
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 1.1e-30 137.5 90 73.3
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 1.9e-30 136.7 90 73.3
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 7.2e-30 134.8 80 82.5
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 7.2e-30 134.8 80 82.5
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 7.2e-30 134.8 80 82.5
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 1.6e-29 133.7 195 40.5
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.8e-28 130.2 85 74.1
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 1.8e-28 130.2 164 43.9
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 2.6e-27 126.3 108 62.0
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 1.0e-23 114.4 82 69.5
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 1.1e-22 110.9 79 68.4
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 5.5e-22 108.6 82 65.9
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 1.8e-20 103.6 61 82.0
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 2.3e-20 103.2 78 61.5
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 8.8e-20 101.3 63 73.0
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 1.2e-19 100.9 63 77.8
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 5.7e-19 98.6 87 57.5
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 9.1e-17 91.3 56 76.8
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 2.7e-13 79.7 44 84.1
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 8.8e-12 74.7 169 26.0
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 2.0e-11 73.6 71 53.5


User provided reference genes

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