Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 4.9e-117 424.5 212 100.0
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 1.9e-84 316.2 165 93.3
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 1.2e-75 287.0 221 64.3
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 4.6e-75 285.0 221 63.8
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 2.3e-74 282.7 221 63.8
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 6.7e-74 281.2 221 62.0
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 8.7e-74 280.8 221 61.5
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 2.8e-72 275.8 221 62.4
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 3.7e-72 275.4 221 61.1
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 3.7e-72 275.4 221 60.2
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 3.7e-72 275.4 222 60.8
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.1e-71 273.9 221 60.2
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 1.1e-71 273.9 221 60.6
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 1.4e-71 273.5 224 61.2
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 1.4e-71 273.5 223 60.5
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 1.8e-71 273.1 221 61.5
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 2.4e-71 272.7 222 61.7
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 3.1e-71 272.3 223 59.6
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 4.0e-71 271.9 221 60.2
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 5.3e-71 271.6 223 60.1
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 6.9e-71 271.2 233 59.7
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 6.9e-71 271.2 223 60.1
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 9.0e-71 270.8 221 61.5
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 9.0e-71 270.8 221 59.3
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 1.2e-70 270.4 221 61.5
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 1.5e-70 270.0 224 62.1
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.0e-70 269.6 221 61.1
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 2.0e-70 269.6 222 59.5
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 2.0e-70 269.6 221 60.2
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 3.4e-70 268.9 221 59.7
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 5.8e-70 268.1 221 58.8
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 5.8e-70 268.1 221 59.7
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 7.6e-70 267.7 221 58.8
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 7.6e-70 267.7 221 59.7
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 1.0e-69 267.3 221 59.7
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 1.3e-69 266.9 221 60.6
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 1.3e-69 266.9 221 60.6
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 1.3e-69 266.9 223 60.5
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 1.7e-69 266.5 221 58.8
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 2.2e-69 266.2 221 58.8
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 2.9e-69 265.8 217 60.8
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 3.8e-69 265.4 220 59.5
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 3.8e-69 265.4 223 59.2
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 4.9e-69 265.0 221 59.3
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 6.5e-69 264.6 221 58.4
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 6.5e-69 264.6 221 56.1
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 6.5e-69 264.6 221 60.2
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 8.4e-69 264.2 221 58.8
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 1.1e-68 263.8 223 60.1
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.1e-68 263.8 221 60.6
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 1.4e-68 263.5 221 58.4
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 1.9e-68 263.1 221 59.3
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 1.9e-68 263.1 223 58.3
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 2.5e-68 262.7 221 60.2
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 2.5e-68 262.7 241 55.2
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 3.2e-68 262.3 224 60.3
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 3.2e-68 262.3 221 60.6
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.2e-68 262.3 221 59.3
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 5.5e-68 261.5 220 60.9
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 7.1e-68 261.2 223 58.3
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 7.1e-68 261.2 223 58.3
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 9.3e-68 260.8 222 58.1
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 1.2e-67 260.4 221 59.3
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.2e-67 260.4 221 59.3
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 2.1e-67 259.6 251 53.0
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 2.7e-67 259.2 221 58.4
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.5e-67 258.8 223 57.8
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 3.5e-67 258.8 222 58.6
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 4.6e-67 258.5 222 58.6
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 4.6e-67 258.5 223 58.7
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 7.9e-67 257.7 223 57.0
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 1.0e-66 257.3 220 60.0
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 1.3e-66 256.9 221 57.9
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.3e-66 256.9 224 58.5
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 1.8e-66 256.5 221 58.4
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 1.8e-66 256.5 221 56.6
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 2.3e-66 256.1 221 59.7
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 2.3e-66 256.1 221 59.3
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 3.0e-66 255.8 222 56.8
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 6.7e-66 254.6 222 58.1
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 6.7e-66 254.6 220 56.8
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 8.7e-66 254.2 221 57.9
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 8.7e-66 254.2 223 57.4
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 1.1e-65 253.8 222 56.3
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 1.1e-65 253.8 222 56.3
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 1.5e-65 253.4 221 58.8
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 1.9e-65 253.1 222 55.4
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 2.5e-65 252.7 222 57.2
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 3.3e-65 252.3 221 55.7
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 7.4e-65 251.1 221 58.4
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 9.6e-65 250.8 222 55.9
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 9.6e-65 250.8 214 58.4
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 1.3e-64 250.4 223 53.8
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 1.6e-64 250.0 222 55.4
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 1.6e-64 250.0 220 56.8
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 2.8e-64 249.2 199 62.8
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 4.8e-64 248.4 223 54.3
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 4.8e-64 248.4 221 56.1
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 4.8e-64 248.4 224 54.5
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 6.2e-64 248.1 223 54.3
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 8.2e-64 247.7 221 56.1
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 8.2e-64 247.7 221 56.6
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 1.1e-63 247.3 222 54.1
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 1.8e-63 246.5 222 55.0
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 2.4e-63 246.1 223 53.8
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.4e-63 246.1 221 55.7
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 6.9e-63 244.6 222 53.6
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 9.0e-63 244.2 222 53.6
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 9.0e-63 244.2 222 53.6
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 2.6e-62 242.7 222 54.1
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 2.6e-62 242.7 222 54.1
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 1.0e-61 240.7 211 58.8
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 2.2e-61 239.6 165 70.9
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 6.7e-58 228.0 168 68.5
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 9.7e-57 224.2 193 59.1
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 5.9e-54 214.9 194 57.7
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.0e-53 214.2 221 52.0
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 1.0e-53 214.2 261 48.3
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 9.4e-52 207.6 221 50.7
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 3.6e-51 205.7 178 56.2
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 1.3e-48 197.2 226 46.0
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 4.8e-48 195.3 224 44.6
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 4.1e-47 192.2 271 42.1
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.4e-46 189.1 207 49.3
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.5e-46 188.7 211 48.3
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 8.5e-45 184.5 221 43.4
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 1.2e-43 180.6 143 60.1
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.8e-40 169.5 198 50.0
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 9.1e-39 164.5 121 65.3
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 7.7e-38 161.4 196 45.9
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 2.9e-29 132.9 200 35.0
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 8.0e-27 124.8 75 76.0
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 1.3e-24 117.5 107 55.1
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.6e-22 110.5 89 61.8
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 4.5e-22 109.0 89 61.8
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 1.2e-19 100.9 77 64.9
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 8.3e-16 88.2 86 54.7
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 1.0e-13 81.3 77 50.6
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 1.7e-13 80.5 104 38.5
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 3.7e-08 62.8 81 42.0


User provided reference genes

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