Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 1.0e-99 366.7 183 100.0
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 7.0e-88 327.4 172 95.3
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 8.4e-49 197.6 116 86.2
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 2.8e-44 182.6 116 77.6
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 4.8e-36 155.2 77 98.7
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 2.8e-28 129.4 66 95.5
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.7e-25 120.2 118 55.1
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 7.1e-24 114.8 118 52.5
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 1.6e-23 113.6 124 48.4
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 2.1e-23 113.2 118 51.7
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 7.9e-23 111.3 119 54.6
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 3.9e-22 109.0 119 50.4
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 1.1e-21 107.5 119 47.9
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.9e-21 106.7 118 48.3
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 2.5e-21 106.3 117 49.6
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 2.5e-21 106.3 118 46.6
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 3.3e-21 105.9 118 49.2
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 4.3e-21 105.5 119 48.7
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 5.6e-21 105.1 118 47.5
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 5.6e-21 105.1 118 47.5
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 7.4e-21 104.8 118 48.3
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 7.4e-21 104.8 118 46.6
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 9.6e-21 104.4 118 50.0
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 1.3e-20 104.0 118 47.5
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 1.3e-20 104.0 118 49.2
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.6e-20 103.6 118 48.3
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 1.6e-20 103.6 118 48.3
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 1.6e-20 103.6 117 52.1
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 2.1e-20 103.2 122 42.6
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 2.1e-20 103.2 118 47.5
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 2.8e-20 102.8 118 46.6
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 3.7e-20 102.4 118 49.2
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 4.8e-20 102.1 118 47.5
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 4.8e-20 102.1 127 44.9
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 6.2e-20 101.7 118 46.6
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 6.2e-20 101.7 118 46.6
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 6.2e-20 101.7 118 46.6
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 6.2e-20 101.7 118 48.3
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 8.2e-20 101.3 118 47.5
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 8.2e-20 101.3 118 46.6
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 8.2e-20 101.3 118 45.8
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.1e-19 100.9 118 46.6
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.1e-19 100.9 118 46.6
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.1e-19 100.9 118 46.6
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 1.4e-19 100.5 118 46.6
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 1.8e-19 100.1 118 45.8
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 1.8e-19 100.1 118 48.3
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 1.8e-19 100.1 118 47.5
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 1.8e-19 100.1 118 50.0
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 1.8e-19 100.1 118 45.8
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 2.4e-19 99.8 118 48.3
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 2.4e-19 99.8 118 47.5
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 2.4e-19 99.8 118 46.6
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 2.4e-19 99.8 121 45.5
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 2.4e-19 99.8 118 44.9
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 2.4e-19 99.8 118 47.5
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 2.4e-19 99.8 118 45.8
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 3.1e-19 99.4 118 44.9
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 4.0e-19 99.0 118 44.9
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 4.0e-19 99.0 118 44.9
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 6.9e-19 98.2 112 47.3
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 1.5e-18 97.1 117 46.2
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 1.5e-18 97.1 117 44.4
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 1.5e-18 97.1 112 46.4
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 1.5e-18 97.1 118 43.2
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.0e-18 96.7 118 42.4
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.0e-18 96.7 118 42.4
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 2.0e-18 96.7 120 47.5
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 2.0e-18 96.7 120 47.5
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 3.4e-18 95.9 118 44.1
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 3.4e-18 95.9 118 44.9
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 4.5e-18 95.5 118 44.9
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 5.8e-18 95.1 118 46.6
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 7.6e-18 94.7 121 44.6
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.3e-17 94.0 118 45.8
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 1.7e-17 93.6 118 44.1
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 1.7e-17 93.6 118 45.8
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 2.2e-17 93.2 111 48.6
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 2.2e-17 93.2 118 46.6
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 2.2e-17 93.2 118 44.1
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 2.2e-17 93.2 118 43.2
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 2.2e-17 93.2 120 45.8
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.2e-17 93.2 112 46.4
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 3.8e-17 92.4 120 44.2
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 3.8e-17 92.4 120 45.8
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 4.9e-17 92.0 117 44.4
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 4.9e-17 92.0 119 46.2
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 6.5e-17 91.7 118 41.5
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 6.5e-17 91.7 118 43.2
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 6.5e-17 91.7 118 43.2
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 6.5e-17 91.7 118 46.6
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 6.5e-17 91.7 112 44.6
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 6.5e-17 91.7 112 46.4
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 8.4e-17 91.3 118 48.3
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 8.4e-17 91.3 118 43.2
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 8.4e-17 91.3 112 45.5
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.1e-16 90.9 118 44.9
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.1e-16 90.9 118 44.1
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.1e-16 90.9 118 44.9
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.1e-16 90.9 118 44.9
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 1.1e-16 90.9 118 42.4
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 1.9e-16 90.1 118 42.4
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 1.9e-16 90.1 118 42.4
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.9e-16 90.1 118 44.9
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 2.5e-16 89.7 112 44.6
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 3.2e-16 89.4 118 43.2
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 3.2e-16 89.4 118 43.2
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 4.2e-16 89.0 118 43.2
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 7.1e-16 88.2 118 43.2
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 7.1e-16 88.2 117 41.9
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 9.3e-16 87.8 118 44.1
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 9.3e-16 87.8 119 43.7
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 9.3e-16 87.8 119 43.7
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 1.2e-15 87.4 118 41.5
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 2.1e-15 86.7 118 42.4
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 2.7e-15 86.3 118 42.4
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 2.7e-15 86.3 118 43.2
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 3.5e-15 85.9 112 42.0
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 3.5e-15 85.9 135 40.0
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 4.6e-15 85.5 117 42.7
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 6.0e-15 85.1 118 41.5
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 7.9e-15 84.7 117 44.4
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.0e-14 84.3 122 42.6
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 1.0e-14 84.3 118 40.7
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 1.8e-14 83.6 118 41.5
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 5.1e-14 82.0 118 41.5
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 1.9e-13 80.1 117 42.7
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 1.9e-13 80.1 119 42.0
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 4.3e-13 79.0 120 40.0
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 7.4e-13 78.2 117 40.2
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 7.4e-13 78.2 118 42.4
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 2.2e-12 76.6 119 38.7
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 3.7e-12 75.9 118 39.8
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 1.4e-11 73.9 115 41.7
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 1.0e-09 67.8 122 36.9
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 1.4e-08 63.9 60 55.0
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 2.3e-06 56.6 121 33.9
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 2.3e-06 56.6 121 33.9
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 3.9e-06 55.8 112 33.9


User provided reference genes

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