Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb335730 Zea mays HOM05D008576 ORTHO05D000385 2.9e-148 528.5 258 100.0
Zm00001eb218570 Zea mays HOM05D008576 ORTHO05D000385 3.4e-40 169.5 166 56.0
Zm00001eb235160 Zea mays HOM05D002305 ORTHO05D000385 4.5e-40 169.1 166 56.0
Zm00001eb239860 Zea mays HOM05D008576 ORTHO05D000385 4.5e-40 169.1 166 56.0
Zm00001eb315670 Zea mays HOM05D008576 ORTHO05D000385 4.5e-40 169.1 166 56.0
Zm00001eb380870 Zea mays HOM05D008576 ORTHO05D000385 5.9e-40 168.7 166 53.6
Zm00001eb354780 Zea mays HOM05D008576 ORTHO05D000385 7.7e-40 168.3 234 46.6
Zm00001eb267220 Zea mays HOM05D008576 ORTHO05D000385 1.0e-39 167.9 165 53.9
Zm00001eb181050 Zea mays HOM05D008576 ORTHO05D000385 2.2e-39 166.8 165 53.3
Zm00001eb420260 Zea mays HOM05D002305 ORTHO05D000385 2.9e-39 166.4 166 55.4
Zm00001eb226540 Zea mays HOM05D008576 ORTHO05D000385 6.5e-39 165.2 165 55.8
Zm00001eb086350 Zea mays HOM05D008576 ORTHO05D000385 1.4e-38 164.1 165 54.5
Zm00001eb133410 Zea mays HOM05D002305 ORTHO05D002528 8.2e-34 148.3 134 59.0
Zm00001eb425380 Zea mays HOM05D008576 ORTHO05D000385 1.5e-32 144.1 161 49.1
Zm00001eb184880 Zea mays HOM05D008576 ORTHO05D000385 1.0e-31 141.4 161 47.8
Zm00001eb395400 Zea mays HOM05D008576 ORTHO05D000385 8.5e-31 138.3 161 49.1
Zm00001eb040590 Zea mays HOM05D008576 ORTHO05D000385 3.2e-30 136.3 107 65.4
Zm00001eb390290 Zea mays HOM05D008576 ORTHO05D000385 1.4e-28 131.0 161 47.8
Zm00001eb029070 Zea mays HOM05D008576 ORTHO05D000385 3.0e-28 129.8 160 46.9
Os02g0129000 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 9.7e-27 124.8 170 42.4
Os08g0367300 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 1.3e-26 124.4 170 41.8
Os05g0202500 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 2.2e-26 123.6 163 42.9
Zm00001eb090520 Zea mays HOM05D008576 ORTHO05D000385 2.8e-26 123.2 88 65.9
Zm00001eb092990 Zea mays HOM05D008576 ORTHO05D000385 2.8e-26 123.2 67 80.6
Zm00001eb093010 Zea mays HOM05D008576 ORTHO05D000385 2.8e-26 123.2 67 80.6
Zm00001eb190070 Zea mays HOM05D008576 ORTHO05D000385 2.8e-26 123.2 67 80.6
Zm00001eb333630 Zea mays HOM05D008576 ORTHO05D000385 2.8e-26 123.2 67 80.6
Zm00001eb384730 Zea mays HOM05D008576 ORTHO05D000385 2.8e-26 123.2 67 80.6
Zm00001eb438630 Zea mays HOM05D008576 ORTHO05D000385 2.8e-26 123.2 67 80.6
Zm00001eb439020 Zea mays HOM05D008576 ORTHO05D000385 2.8e-26 123.2 67 80.6
Zm00001eb029790 Zea mays HOM05D008576 ORTHO05D000385 4.8e-26 122.5 88 64.8
Zm00001eb027370 Zea mays HOM05D008576 ORTHO05D000385 8.2e-26 121.7 67 79.1
Zm00001eb234630 Zea mays HOM05D008576 ORTHO05D000385 1.4e-25 120.9 67 79.1
Zm00001eb182790 Zea mays HOM05D008576 ORTHO05D000385 3.1e-25 119.8 85 65.9
Os07g0212400 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 5.9e-24 115.5 170 39.4
Zm00001eb132600 Zea mays HOM05D002305 ORTHO05D000385 1.0e-23 114.8 138 48.6
AUR62041080 Chenopodium quinoa HOM05D008576 ORTHO05D000385 7.7e-16 88.6 72 58.3
Gohir.A12G105966 Gossypium hirsutum HOM05D040140 ORTHO05D000385 2.3e-12 77.0 95 40.0
TWI34G1252 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 2.2e-10 70.5 83 39.8
Gohir.A01G193333 Gossypium hirsutum HOM05D021375 ORTHO05D022808 2.8e-10 70.1 76 43.4
vmacro01714 Vaccinium macrocarpon HOM05D005763 ORTHO05D005970 6.3e-10 68.9 101 40.6
Os04g0610000 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 2.4e-09 67.0 91 38.5
Zm00001eb308920 Zea mays HOM05D008576 ORTHO05D000385 2.4e-09 67.0 29 100.0
Zm00001eb388400 Zea mays HOM05D008576 ORTHO05D000385 2.4e-09 67.0 29 100.0
Cpa.g.c35072.1 Carica papaya HOM05D001309 ORTHO05D000385 3.1e-09 66.6 113 33.6
Gohir.A06G124402 Gossypium hirsutum HOM05D008576 ORTHO05D000385 3.1e-09 66.6 55 49.1
COL.COLO4_15867 Corchorus olitorius HOM05D001309 ORTHO05D004434 7.0e-09 65.5 103 38.8
COL.COLO4_21802 Corchorus olitorius HOM05D001309 ORTHO05D000385 7.0e-09 65.5 103 38.8
COL.COLO4_05115 Corchorus olitorius HOM05D001309 ORTHO05D004434 2.0e-08 63.9 92 39.1
Sc11g0006850 Simmondsia chinensis HOM05D001309 ORTHO05D000385 2.0e-08 63.9 76 40.8
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 3.5e-08 63.2 72 40.3
COL.COLO4_15532 Corchorus olitorius HOM05D001309 ORTHO05D000385 4.5e-08 62.8 70 44.3
Lj4g0021808 Lotus japonicus HOM05D001309 ORTHO05D000385 5.9e-08 62.4 72 45.8
arahy.Tifrunner.gnm1.ann1.2IZ9JW Arachis hypogaea HOM05D002954 ORTHO05D003353 7.7e-08 62.0 67 35.8
MBI14_g07746_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.0e-07 61.6 64 39.1
Nn1g00481 Nelumbo nucifera HOM05D001309 ORTHO05D000385 1.3e-07 61.2 71 39.4
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 1.3e-07 61.2 91 34.1
Peaxi162Scf02065g00005 Petunia axillaris HOM05D002954 ORTHO05D010308 1.3e-07 61.2 57 38.6
TWI75G0500 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 1.3e-07 61.2 52 42.3
Actinidia01605 Actinidia chinensis HOM05D001309 ORTHO05D005970 1.7e-07 60.8 75 45.3
MBI15_g36793_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.2e-07 60.5 87 33.3
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 2.9e-07 60.1 59 50.8
Manes.10G118800 Manihot esculenta HOM05D001309 ORTHO05D000385 2.9e-07 60.1 86 34.9
Peaxi162Scf01071g00046 Petunia axillaris HOM05D040622 ORTHO05D010308 2.9e-07 60.1 57 38.6
MBI19_g33997_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.8e-07 59.7 62 38.7
Nitab4.5_0000522g0140 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.8e-07 59.7 57 50.9
Rhsim04G0054800 Rhododendron simsii HOM05D001309 ORTHO05D000385 3.8e-07 59.7 72 40.3
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 3.8e-07 59.7 59 49.2
arahy.Tifrunner.gnm1.ann1.H1PTY0 Arachis hypogaea HOM05D002954 ORTHO05D010308 5.0e-07 59.3 108 29.6
Rhsim04G0055300 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.0e-07 59.3 91 34.1
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 8.5e-07 58.5 75 44.0
AUR62013145 Chenopodium quinoa HOM05D001385 ORTHO05D000378 8.5e-07 58.5 124 32.3
Gohir.A10G125500 Gossypium hirsutum HOM05D001309 ORTHO05D000385 8.5e-07 58.5 55 40.0
MBI09_g15192_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 8.5e-07 58.5 64 39.1
MBI19_g12820_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 8.5e-07 58.5 64 39.1
Manes.07G023800 Manihot esculenta HOM05D001309 ORTHO05D005970 8.5e-07 58.5 63 42.9
Nitab4.5_0000789g0050 Nicotiana tabacum HOM05D001309 ORTHO05D000385 8.5e-07 58.5 57 50.9
Os04g0609900 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 8.5e-07 58.5 52 44.2
MBI11_g19485_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.1e-06 58.2 64 37.5
EL10Ac9g21493 Beta vulgaris HOM05D001385 ORTHO05D004434 1.5e-06 57.8 79 38.0
AUR62010149 Chenopodium quinoa HOM05D001385 ORTHO05D004434 1.5e-06 57.8 79 39.2
Nitab4.5_0002373g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.5e-06 57.8 79 34.2
Zm00001eb027930 Zea mays HOM05D008576 ORTHO05D000385 1.5e-06 57.8 108 37.0
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 1.9e-06 57.4 70 44.3
Lj5g0025673 Lotus japonicus HOM05D001309 ORTHO05D000385 1.9e-06 57.4 72 41.7
MBI09_g33431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.5e-06 57.0 97 27.8
Lj5A265G37 Lonicera japonica HOM05D005763 ORTHO05D005970 3.2e-06 56.6 122 34.4
Peaxi162Scf00524g00007 Petunia axillaris HOM05D001309 ORTHO05D000385 3.2e-06 56.6 76 40.8
Hund00070 Selenicereus undatus HOM05D001385 ORTHO05D004434 3.2e-06 56.6 121 32.2
Hund06375 Selenicereus undatus HOM05D001385 ORTHO05D004434 3.2e-06 56.6 56 46.4
Gorai.002G216700 Gossypium raimondii HOM05D001309 ORTHO05D000385 4.2e-06 56.2 59 42.4
Nitab4.5_0000817g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 4.2e-06 56.2 79 34.2
Nitab4.5_0001076g0100 Nicotiana tabacum HOM05D002954 ORTHO05D003353 5.5e-06 55.8 55 40.0
Nitab4.5_0001645g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 5.5e-06 55.8 136 28.7
Peaxi162Scf00032g00919 Petunia axillaris HOM05D001309 ORTHO05D000385 5.5e-06 55.8 72 37.5
VMungo0720G1591 Vigna mungo HOM05D002954 ORTHO05D000385 5.5e-06 55.8 54 44.4
COL.COLO4_24303 Corchorus olitorius HOM05D001309 ORTHO05D000385 7.2e-06 55.5 74 43.2
Gohir.A01G183600 Gossypium hirsutum HOM05D001309 ORTHO05D005970 7.2e-06 55.5 59 40.7
Nitab4.5_0004891g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 7.2e-06 55.5 69 37.7
TWI60G1041 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 7.2e-06 55.5 147 27.2
VMungo0647G1703 Vigna mungo HOM05D002954 ORTHO05D000002 7.2e-06 55.5 60 41.7
Lj9A299T35 Lonicera japonica HOM05D001309 ORTHO05D000385 9.4e-06 55.1 94 35.1


User provided reference genes

Program Settings