Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb334840 Zea mays HOM05D004236 ORTHO05D004903 1.8e-142 509.2 252 100.0
Os01g0121100 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 3.7e-79 298.9 225 70.7
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 7.7e-53 211.5 238 50.4
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 2.2e-52 209.9 234 51.7
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 5.0e-52 208.8 236 51.3
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 1.5e-51 207.2 236 51.3
Nn1g02732 Nelumbo nucifera HOM05D004236 ORTHO05D004903 2.5e-51 206.5 236 49.2
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 1.6e-50 203.8 240 50.0
Zm00001eb156450 Zea mays HOM05D004236 ORTHO05D004903 2.1e-50 203.4 243 51.9
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 2.7e-50 203.0 236 48.3
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 2.7e-50 203.0 236 50.4
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 2.7e-50 203.0 240 50.0
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 8.0e-50 201.4 236 48.7
TAR622G0693 Trochodendron aralioides HOM05D004236 ORTHO05D004903 8.0e-50 201.4 236 49.2
GSVIVG01030921001 Vitis vinifera HOM05D004236 ORTHO05D004903 1.4e-49 200.7 237 50.6
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 2.3e-49 199.9 238 51.3
CiPaw.04G044800 Carya illinoinensis HOM05D004236 ORTHO05D004903 2.3e-49 199.9 236 51.7
CiPaw.03G066200 Carya illinoinensis HOM05D004236 ORTHO05D004903 3.0e-49 199.5 235 51.5
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 4.0e-49 199.1 236 50.0
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 5.2e-49 198.7 236 48.7
Dinv33978 Davidia involucrata HOM05D004236 ORTHO05D004903 5.2e-49 198.7 236 50.4
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 8.8e-49 198.0 236 49.2
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 1.5e-48 197.2 236 50.0
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 1.5e-48 197.2 238 48.3
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 5.7e-48 195.3 238 49.2
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 5.7e-48 195.3 238 49.2
Gohir.D11G173300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 7.5e-48 194.9 242 49.6
Gorai.007G185600 Gossypium raimondii HOM05D004236 ORTHO05D004903 7.5e-48 194.9 242 49.6
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 9.7e-48 194.5 238 50.0
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 1.3e-47 194.1 238 47.9
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 1.3e-47 194.1 206 53.4
CANSAT80G2204 Cannabis sativa HOM05D004236 ORTHO05D004903 1.7e-47 193.7 236 48.3
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 2.2e-47 193.4 236 49.6
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 2.8e-47 193.0 237 48.9
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 2.8e-47 193.0 219 54.8
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 3.7e-47 192.6 238 47.9
FvH4_1g29040 Fragaria vesca HOM05D004236 ORTHO05D004903 4.8e-47 192.2 214 54.2
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 8.3e-47 191.4 236 47.9
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 8.3e-47 191.4 236 49.6
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 1.1e-46 191.0 236 50.0
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 1.8e-46 190.3 236 47.9
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.8e-46 190.3 236 50.0
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.8e-46 190.3 236 50.0
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 2.4e-46 189.9 233 47.6
CARHR058730 Cardamine hirsuta HOM05D004236 ORTHO05D004903 2.4e-46 189.9 234 47.4
Gohir.A11G167000 Gossypium hirsutum HOM05D004236 ORTHO05D004903 2.4e-46 189.9 242 48.3
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 2.4e-46 189.9 237 49.4
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 3.1e-46 189.5 237 48.1
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 3.1e-46 189.5 237 48.1
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 4.1e-46 189.1 237 49.8
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 4.1e-46 189.1 230 46.5
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 4.1e-46 189.1 236 47.0
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 4.1e-46 189.1 236 45.3
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 4.1e-46 189.1 240 49.2
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 5.3e-46 188.7 237 48.5
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 5.3e-46 188.7 236 47.5
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 7.0e-46 188.3 236 48.7
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 7.0e-46 188.3 232 48.3
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 9.1e-46 188.0 233 47.6
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 9.1e-46 188.0 236 50.0
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 1.2e-45 187.6 238 49.2
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 1.6e-45 187.2 236 48.3
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 1.6e-45 187.2 236 48.3
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 1.6e-45 187.2 233 47.6
ClCG05G010730 Citrullus lanatus HOM05D004236 ORTHO05D004903 1.6e-45 187.2 237 46.8
ECA238G4753 Erigeron canadensis HOM05D004236 ORTHO05D004903 1.6e-45 187.2 234 46.2
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 1.6e-45 187.2 236 46.2
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 2.0e-45 186.8 234 46.6
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 2.0e-45 186.8 237 50.6
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 2.0e-45 186.8 234 45.7
CDE04G0933 Ceratophyllum demersum HOM05D004236 ORTHO05D004903 2.7e-45 186.4 237 45.6
Dinv14861 Davidia involucrata HOM05D004236 ORTHO05D004903 2.7e-45 186.4 235 46.0
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 2.7e-45 186.4 237 48.5
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 2.7e-45 186.4 237 48.5
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 3.5e-45 186.0 233 47.2
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 4.5e-45 185.7 233 46.8
Lsat_1_v5_gn_4_15520 Lactuca sativa HOM05D004236 ORTHO05D004903 4.5e-45 185.7 238 46.2
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 4.5e-45 185.7 236 47.5
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 5.9e-45 185.3 237 47.7
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 7.7e-45 184.9 236 47.0
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 1.0e-44 184.5 233 46.4
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 1.0e-44 184.5 236 46.2
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 1.0e-44 184.5 241 46.5
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 1.0e-44 184.5 236 46.2
Actinidia17648 Actinidia chinensis HOM05D004236 ORTHO05D004903 1.3e-44 184.1 205 50.7
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 1.7e-44 183.7 235 46.4
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 1.7e-44 183.7 232 48.7
AUR62023259 Chenopodium quinoa HOM05D004236 ORTHO05D004903 2.2e-44 183.3 241 46.1
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 2.2e-44 183.3 236 48.3
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 2.2e-44 183.3 236 47.9
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 3.8e-44 182.6 236 46.2
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 3.8e-44 182.6 258 42.2
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 5.0e-44 182.2 245 46.5
Nitab4.5_0002456g0050 Nicotiana tabacum HOM05D004236 ORTHO05D004903 8.5e-44 181.4 238 45.8
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 1.1e-43 181.0 236 47.5
Sed0018742 Sechium edule HOM05D004236 ORTHO05D004903 1.1e-43 181.0 237 47.3
Sc11g0008520 Simmondsia chinensis HOM05D004236 ORTHO05D004903 1.1e-43 181.0 241 44.8
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 1.1e-43 181.0 236 45.8
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 1.1e-43 181.0 237 50.2
MELO3C020314.2 Cucumis melo HOM05D004236 ORTHO05D004903 4.2e-43 179.1 238 45.8
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 5.5e-43 178.7 235 45.1
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 1.6e-42 177.2 237 45.6
AT1G66680 Arabidopsis thaliana HOM05D004236 ORTHO05D004903 1.6e-42 177.2 236 44.5
Gohir.D07G079800 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.6e-42 177.2 205 53.2
Gorai.001G084600 Gossypium raimondii HOM05D004236 ORTHO05D004903 1.6e-42 177.2 205 53.2
MBI10_g41074_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 3.6e-42 176.0 228 46.1
Carub.0002s1288 Capsella rubella HOM05D004236 ORTHO05D004903 6.1e-42 175.3 236 45.3
Gohir.A07G075300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 8.0e-42 174.9 205 53.2
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 1.0e-41 174.5 236 44.1
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 1.0e-41 174.5 239 43.1
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 5.2e-41 172.2 236 44.9
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 1.2e-40 171.0 236 43.6
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 1.5e-40 170.6 266 42.1
Ah.16g101430 Amaranthus hybridus HOM05D004236 ORTHO05D004903 3.4e-40 169.5 240 43.3
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 1.3e-39 167.5 237 44.7
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 3.7e-39 166.0 292 38.7
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 4.8e-39 165.6 242 47.5
CAN.G625.68 Capsicum annuum HOM05D004236 ORTHO05D004903 6.3e-39 165.2 199 47.7
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 3.1e-38 162.9 269 41.3
Mapoly0105s0009 Marchantia polymorpha HOM05D004236 ORTHO05D004903 5.9e-37 158.7 241 41.5
Pp3c15_25630 Physcomitrium patens HOM05D004236 ORTHO05D004903 6.1e-34 148.7 241 39.0
Nitab4.5_0005700g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.5e-32 144.1 238 39.9
TWI77G0072 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 2.7e-29 133.3 235 38.3
Nitab4.5_0000625g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 2.3e-28 130.2 239 37.2
BcaB08g34729 Brassica carinata HOM05D000498 ORTHO05D000354 2.1e-26 123.6 159 45.3
BcaB06g28281 Brassica carinata HOM05D004236 ORTHO05D004903 2.8e-26 123.2 153 47.7
Solyc03g034415.1 Solanum lycopersicum HOM05D004236 ORTHO05D004903 2.8e-26 123.2 171 42.7
CsaV3_3G017790 Cucumis sativus L. HOM05D004236 ORTHO05D004903 3.6e-26 122.9 128 50.0
THA.LOC104822473 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 5.2e-25 119.0 128 50.0
Sed0017902 Sechium edule HOM05D004236 ORTHO05D004903 9.8e-24 114.8 201 41.3
SMO340G0155 Selaginella moellendorffii HOM05D004236 ORTHO05D004903 8.3e-23 111.7 199 37.7
THA.LOC104822507 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 5.4e-22 109.0 133 47.4
HPP92_027367 Vanilla planifolia HOM05D000680 ORTHO05D000738 2.5e-19 100.1 159 44.7
Sopen03g007300 Solanum pennellii HOM05D004236 ORTHO05D004903 9.5e-19 98.2 145 41.4
Oeu048228.1 Olea europaea HOM05D004236 ORTHO05D004903 6.8e-17 92.0 136 44.1
SEGI_28739 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 5.8e-16 89.0 173 36.4
Potri.012G068600 Populus trichocarpa HOM05D004236 ORTHO05D004903 1.4e-14 84.3 65 66.2
BcaB01g01715 Brassica carinata HOM05D004236 ORTHO05D004903 1.6e-13 80.9 102 50.0
HPP92_023117 Vanilla planifolia HOM05D004236 ORTHO05D004903 6.0e-13 79.0 115 45.2
SEGI_26756 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 1.7e-12 77.4 74 51.4
Sabra15G0087400 Salix brachista HOM05D004236 ORTHO05D004903 3.9e-12 76.3 141 36.9
Potri.012G068550 Populus trichocarpa HOM05D004236 ORTHO05D004903 2.1e-10 70.5 82 50.0
Nitab4.5_0000901g0080 Nicotiana tabacum HOM05D004236 ORTHO05D000001 8.9e-09 65.1 71 52.1
Actinidia13574 Actinidia chinensis HOM05D004236 ORTHO05D004903 3.4e-08 63.2 64 56.2
Lsat_1_v5_gn_0_260 Lactuca sativa HOM05D004236 ORTHO05D004903 4.4e-08 62.8 95 37.9
Lsat_1_v5_gn_0_31400 Lactuca sativa HOM05D004236 ORTHO05D004903 4.4e-08 62.8 95 37.9
Lsat_1_v5_gn_3_124540 Lactuca sativa HOM05D004236 ORTHO05D004903 4.4e-08 62.8 95 37.9
Lsat_1_v5_gn_3_86660 Lactuca sativa HOM05D004236 ORTHO05D004903 4.4e-08 62.8 95 37.9
Nitab4.5_0000901g0060 Nicotiana tabacum HOM05D004236 ORTHO05D004903 5.8e-08 62.4 40 72.5
CBR_g26148 Chara braunii HOM05D004236 ORTHO05D004903 7.6e-08 62.0 61 49.2
SHI07812 Sapria himalayana HOM05D004236 ORTHO05D004903 9.9e-08 61.6 39 71.8


User provided reference genes

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