Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb200110 Zea mays HOM05D001669 ORTHO05D442149 3.1e-66 255.0 127 100.0
Zm00001eb334520 Zea mays HOM05D001669 ORTHO05D442419 3.1e-66 255.0 127 100.0
Zm00001eb410930 Zea mays HOM05D001669 ORTHO05D006496 6.5e-24 114.4 103 64.1
Os12g0515400 Oryza sativa ssp. japonica HOM05D001669 ORTHO05D006496 3.2e-23 112.1 103 62.1
Peaxi162Scf00004g02316 Petunia axillaris HOM05D001669 ORTHO05D006496 2.7e-22 109.0 100 62.0
CDE10G0225 Ceratophyllum demersum HOM05D001669 ORTHO05D006496 6.0e-22 107.8 100 63.0
AUR62019297 Chenopodium quinoa HOM05D001669 ORTHO05D006496 7.9e-22 107.5 100 62.0
Solyc11g065830.2 Solanum lycopersicum HOM05D001669 ORTHO05D006496 7.9e-22 107.5 100 62.0
Sopen11g025580 Solanum pennellii HOM05D001669 ORTHO05D006496 7.9e-22 107.5 100 62.0
PGSC0003DMG400007359 Solanum tuberosum HOM05D001669 ORTHO05D006496 7.9e-22 107.5 100 62.0
AUR62000117 Chenopodium quinoa HOM05D001669 ORTHO05D002854 1.0e-21 107.1 100 62.0
SEGI_36553 Sequoiadendron giganteum HOM05D001669 ORTHO05D006496 1.0e-21 107.1 100 63.0
CAN.G1789.1 Capsicum annuum HOM05D001669 ORTHO05D006496 1.3e-21 106.7 100 62.0
Nitab4.5_0005819g0020 Nicotiana tabacum HOM05D001669 ORTHO05D006496 1.3e-21 106.7 100 62.0
Nitab4.5_0006559g0010 Nicotiana tabacum HOM05D001669 ORTHO05D006496 1.3e-21 106.7 100 62.0
Ah.06g194250 Amaranthus hybridus HOM05D001669 ORTHO05D006496 1.8e-21 106.3 100 61.0
MD11G1193500 Malus domestica HOM05D001669 ORTHO05D006496 1.8e-21 106.3 100 64.0
Mapoly0100s0052 Marchantia polymorpha HOM05D001669 ORTHO05D006496 1.8e-21 106.3 100 63.0
Oeu015665.1 Olea europaea HOM05D001669 ORTHO05D006496 1.8e-21 106.3 100 60.0
Oeu043296.1 Olea europaea HOM05D001669 ORTHO05D006496 1.8e-21 106.3 100 60.0
QL01p004767 Quercus lobata HOM05D001669 ORTHO05D006496 1.8e-21 106.3 100 63.0
Lj1A331T23 Lonicera japonica HOM05D001669 ORTHO05D006496 2.3e-21 105.9 100 63.0
Manes.06G164600 Manihot esculenta HOM05D001669 ORTHO05D006496 2.3e-21 105.9 100 62.0
SalBow8G3065 Salvia bowleyana HOM05D001669 ORTHO05D006496 2.3e-21 105.9 100 61.0
Haze_23134 Corylus avellana HOM05D001669 ORTHO05D006496 3.0e-21 105.5 100 62.0
Prupe.4G248000 Prunus persica HOM05D001669 ORTHO05D006496 3.0e-21 105.5 100 63.0
RcHm_v2.0_Chr5g0051981 Rosa chinensis HOM05D001669 ORTHO05D006496 3.0e-21 105.5 100 63.0
TWI32G0018 Tripterygium wilfordii HOM05D001669 ORTHO05D006496 3.0e-21 105.5 100 62.0
TWI60G1385 Tripterygium wilfordii HOM05D001669 ORTHO05D006496 3.0e-21 105.5 100 62.0
Aqoxy2G00128 Aquilegia oxysepala HOM05D001669 ORTHO05D006496 3.9e-21 105.1 105 61.0
MSTRG.17592 Avicennia marina HOM05D001669 ORTHO05D006496 3.9e-21 105.1 100 60.0
EL10Ac4g10256 Beta vulgaris HOM05D001669 ORTHO05D006496 3.9e-21 105.1 100 61.0
EL10Ac4g10273 Beta vulgaris HOM05D001669 ORTHO05D006496 3.9e-21 105.1 100 61.0
Dinv36263 Davidia involucrata HOM05D001669 ORTHO05D006496 3.9e-21 105.1 100 62.0
Manes.14G002500 Manihot esculenta HOM05D001669 ORTHO05D006496 3.9e-21 105.1 100 62.0
Oeu025866.1 Olea europaea HOM05D001669 ORTHO05D006496 3.9e-21 105.1 100 61.0
DCAR_029950 Daucus carota HOM05D001669 ORTHO05D006496 5.1e-21 104.8 100 62.0
Duzib168G0359 Durio zibethinus HOM05D001669 ORTHO05D006496 5.1e-21 104.8 100 61.0
Migut.D00599 Erythranthe guttata HOM05D001669 ORTHO05D006496 5.1e-21 104.8 100 60.0
Migut.N02316 Erythranthe guttata HOM05D001669 ORTHO05D006496 5.1e-21 104.8 100 60.0
Eucgr.J00769 Eucalyptus grandis HOM05D001669 ORTHO05D006496 5.1e-21 104.8 100 62.0
Hund22032 Selenicereus undatus HOM05D001669 ORTHO05D006496 5.1e-21 104.8 100 61.0
TAR623G1461 Trochodendron aralioides HOM05D001669 ORTHO05D006496 5.1e-21 104.8 100 62.0
HPP92_023575 Vanilla planifolia HOM05D001669 ORTHO05D006496 5.1e-21 104.8 100 62.0
AagrBONN_evm.TU.Sc2ySwM_344.2858 Anthoceros agrestis HOM05D001669 ORTHO05D006496 6.7e-21 104.4 100 60.0
Ciclev10014769m.g Citrus clementina HOM05D001669 ORTHO05D006496 6.7e-21 104.4 100 61.0
ECA248G2930 Erigeron canadensis HOM05D001669 ORTHO05D006496 6.7e-21 104.4 100 62.0
HanXRQChr13g0405851 Helianthus annuus HOM05D001669 ORTHO05D006496 6.7e-21 104.4 100 62.0
Lsat_1_v5_gn_1_66101 Lactuca sativa HOM05D001669 ORTHO05D006496 6.7e-21 104.4 100 62.0
Nn7g36197 Nelumbo nucifera HOM05D001669 ORTHO05D006496 6.7e-21 104.4 100 61.0
SMO353G0233 Selaginella moellendorffii HOM05D001669 ORTHO05D006496 6.7e-21 104.4 103 62.1
Hund07512 Selenicereus undatus HOM05D001669 ORTHO05D006496 6.7e-21 104.4 102 60.8
MSTRG.12469 Avicennia marina HOM05D001669 ORTHO05D006496 8.7e-21 104.0 100 60.0
Cpa.g.sc84.58 Carica papaya HOM05D001669 ORTHO05D006496 8.7e-21 104.0 100 61.0
Cc08_g17180 Coffea canephora HOM05D001669 ORTHO05D006496 8.7e-21 104.0 100 60.0
FvH4_3g28880 Fragaria vesca HOM05D001669 ORTHO05D006496 8.7e-21 104.0 100 62.0
FAN16G1981 Fragaria x ananassa HOM05D001669 ORTHO05D006496 8.7e-21 104.0 100 62.0
FAN21G1446 Fragaria x ananassa HOM05D001669 ORTHO05D006496 8.7e-21 104.0 100 62.0
FAN25G2948 Fragaria x ananassa HOM05D001669 ORTHO05D006496 8.7e-21 104.0 100 62.0
HanXRQChr10g0291111 Helianthus annuus HOM05D001669 ORTHO05D006496 8.7e-21 104.0 100 61.0
MD03G1175800 Malus domestica HOM05D001669 ORTHO05D006496 8.7e-21 104.0 100 62.0
SGA_v2.0_scaffold42G16103 Striga asiatica HOM05D001669 ORTHO05D006496 8.7e-21 104.0 100 60.0
Aa31LG3G14740 Aethionema arabicum HOM05D001669 ORTHO05D006496 1.1e-20 103.6 100 62.0
Carub.0006s1105 Capsella rubella HOM05D001669 ORTHO05D006496 1.1e-20 103.6 100 62.0
CARHR200590 Cardamine hirsuta HOM05D001669 ORTHO05D006496 1.1e-20 103.6 100 62.0
MBI01_g18880_MAGBIO Magnolia biondii HOM05D001669 ORTHO05D006496 1.1e-20 103.6 100 62.0
Rhsim01G0191600 Rhododendron simsii HOM05D001669 ORTHO05D006496 1.1e-20 103.6 100 60.0
Sabra16G0158300 Salix brachista HOM05D001669 ORTHO05D006496 1.1e-20 103.6 100 62.0
Sp6g31090 Schrenkiella parvula HOM05D001669 ORTHO05D006496 1.1e-20 103.6 100 62.0
Sed0001047 Sechium edule HOM05D001669 ORTHO05D006496 1.1e-20 103.6 100 61.0
SGA_v2.0_scaffold8G04594 Striga asiatica HOM05D001669 ORTHO05D006496 1.1e-20 103.6 100 60.0
Cfa009768 Carpinus fangiana HOM05D001669 ORTHO05D006496 1.5e-20 103.2 100 61.0
ClCG02G023250 Citrullus lanatus HOM05D001669 ORTHO05D006496 1.5e-20 103.2 100 61.0
COL.COLO4_02786 Corchorus olitorius HOM05D001669 ORTHO05D006496 1.5e-20 103.2 100 61.0
Duzib150G1517 Durio zibethinus HOM05D001669 ORTHO05D006496 1.5e-20 103.2 100 61.0
Pp3c18_1460 Physcomitrium patens HOM05D001669 ORTHO05D006496 1.5e-20 103.2 100 60.0
Pp3c18_1490 Physcomitrium patens HOM05D001669 ORTHO05D006496 1.5e-20 103.2 100 60.0
Potri.009G053800 Populus trichocarpa HOM05D001669 ORTHO05D006496 1.5e-20 103.2 100 61.0
Sabra09G0039100 Salix brachista HOM05D001669 ORTHO05D006496 1.5e-20 103.2 100 62.0
vmacro12716 Vaccinium macrocarpon HOM05D001669 ORTHO05D006496 1.5e-20 103.2 100 60.0
CSS0018404 Camellia sinensis var. sinensis HOM05D001669 ORTHO05D006496 1.9e-20 102.8 100 61.0
Nn037s41628 Nelumbo nucifera HOM05D001669 ORTHO05D006496 1.9e-20 102.8 96 62.5
Nn2g15401 Nelumbo nucifera HOM05D001669 ORTHO05D006496 1.9e-20 102.8 96 62.5
unitig_22.g6204 Utricularia gibba HOM05D001669 ORTHO05D006496 1.9e-20 102.8 100 60.0
Atru.chr3.2726 Acer truncatum HOM05D001669 ORTHO05D006496 2.5e-20 102.4 100 61.0
AL6G23410 Arabidopsis lyrata HOM05D001669 ORTHO05D006496 2.5e-20 102.4 100 61.0
AT5G12860 Arabidopsis thaliana HOM05D001669 ORTHO05D006496 2.5e-20 102.4 100 61.0
BcaB08g37016 Brassica carinata HOM05D001669 ORTHO05D006496 2.5e-20 102.4 100 61.0
Thhalv10013154m.g Eutrema salsugineum HOM05D001669 ORTHO05D006496 2.5e-20 102.4 100 61.0
Medtr4g065007 Medicago truncatula HOM05D001669 ORTHO05D006496 3.3e-20 102.1 100 60.0
Potri.001G258600 Populus trichocarpa HOM05D001669 ORTHO05D006496 3.3e-20 102.1 100 61.0
THA.LOC104811166 Tarenaya hassleriana HOM05D001669 ORTHO05D006496 3.3e-20 102.1 100 60.0
CANSAT54G0044 Cannabis sativa HOM05D001669 ORTHO05D006496 4.3e-20 101.7 100 61.0
Gohir.A09G114600 Gossypium hirsutum HOM05D001669 ORTHO05D006496 4.3e-20 101.7 100 61.0
Gohir.D09G111300 Gossypium hirsutum HOM05D001669 ORTHO05D006496 4.3e-20 101.7 100 61.0
Gorai.006G129000 Gossypium raimondii HOM05D001669 ORTHO05D006496 4.3e-20 101.7 100 61.0
Hma1.2p1_0861F.1_g229690 Hydrangea macrophylla HOM05D001669 ORTHO05D006496 4.3e-20 101.7 100 60.0
Thecc.09G233000 Theobroma cacao HOM05D001669 ORTHO05D006496 4.3e-20 101.7 100 60.0
BcaC04g19175 Brassica carinata HOM05D001669 ORTHO05D006496 5.7e-20 101.3 100 60.0
A10p25300 Brassica napus HOM05D001669 ORTHO05D006496 5.7e-20 101.3 100 60.0
C09p64310 Brassica napus HOM05D001669 ORTHO05D006496 5.7e-20 101.3 100 60.0
BolC9t59268H Brassica oleracea HOM05D001669 ORTHO05D006496 5.7e-20 101.3 100 60.0
BraA10t44592Z Brassica rapa HOM05D001669 ORTHO05D006496 5.7e-20 101.3 100 60.0
PSO210G3020 Papaver somniferum HOM05D001669 ORTHO05D006496 5.7e-20 101.3 100 61.0
PSO210G5994 Papaver somniferum HOM05D001669 ORTHO05D006496 5.7e-20 101.3 100 61.0
Sc09g0000690 Simmondsia chinensis HOM05D001669 ORTHO05D006496 5.7e-20 101.3 100 60.0
MELO3C014596.2 Cucumis melo HOM05D001669 ORTHO05D006496 7.4e-20 100.9 100 60.0
CsaV3_4G024240 Cucumis sativus L. HOM05D001669 ORTHO05D006496 7.4e-20 100.9 100 60.0
Lalb_Chr03g0026341 Lupinus albus HOM05D001669 ORTHO05D006496 7.4e-20 100.9 100 60.0
Lalb_Chr24g0397091 Lupinus albus HOM05D001669 ORTHO05D006496 7.4e-20 100.9 100 60.0
SalBow5G5273 Salvia bowleyana HOM05D001669 ORTHO05D006496 7.4e-20 100.9 100 58.0
PGR119G1402 Punica granatum HOM05D001669 ORTHO05D006496 9.7e-20 100.5 100 60.0
Actinidia23970 Actinidia chinensis HOM05D001669 ORTHO05D006496 1.6e-19 99.8 100 58.0
arahy.Tifrunner.gnm1.ann1.GHW2P2 Arachis hypogaea HOM05D001669 ORTHO05D006496 2.2e-19 99.4 100 58.0
arahy.Tifrunner.gnm1.ann1.KKIJ5Q Arachis hypogaea HOM05D001669 ORTHO05D006496 2.2e-19 99.4 100 58.0
Ca_11282_v3 Cicer arietinum L. HOM05D001669 ORTHO05D006496 2.8e-19 99.0 100 59.0
Glyma.11G133800 Glycine max HOM05D001669 ORTHO05D006496 2.8e-19 99.0 102 59.8
Glyma.12G058000 Glycine max HOM05D001669 ORTHO05D006496 2.8e-19 99.0 102 59.8
Psat7g212080 Pisum sativum HOM05D001669 ORTHO05D006496 2.8e-19 99.0 100 59.0
Lj3g0011907 Lotus japonicus HOM05D001669 ORTHO05D006496 4.8e-19 98.2 100 58.0
VMungo1127G1863 Vigna mungo HOM05D001669 ORTHO05D006496 4.8e-19 98.2 100 58.0
Phvul.011G059900 Phaseolus vulgaris HOM05D001669 ORTHO05D006496 6.3e-19 97.8 100 58.0
CBR_g8933 Chara braunii HOM05D001669 ORTHO05D006496 1.5e-17 93.2 100 55.0
FAN11G0250 Fragaria x ananassa HOM05D001669 ORTHO05D006496 1.5e-17 93.2 100 60.0
arahy.Tifrunner.gnm1.ann1.48A50S Arachis hypogaea HOM05D001669 ORTHO05D006496 2.0e-17 92.8 99 56.6
arahy.Tifrunner.gnm1.ann1.TKPQ9K Arachis hypogaea HOM05D001669 ORTHO05D006496 2.0e-17 92.8 99 56.6
Hund07513 Selenicereus undatus HOM05D001669 ORTHO05D006496 3.2e-15 85.5 102 52.0
MCO14G580 Micromonas commoda HOM05D001669 ORTHO05D006496 7.2e-15 84.3 100 51.0
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 1.8e-13 79.7 107 50.5
Cre17.g713200 Chlamydomonas reinhardtii HOM05D001669 ORTHO05D006496 3.3e-12 75.5 101 46.5
Cre17.g713350 Chlamydomonas reinhardtii HOM05D001669 ORTHO05D006496 3.3e-12 75.5 101 46.5
PRCOL_00001596 Prasinoderma coloniale HOM05D001669 ORTHO05D006496 3.3e-12 75.5 91 50.5
CAN.G483.5 Capsicum annuum HOM05D001669 ORTHO05D003379 4.3e-12 75.1 86 54.7
Actinidia39397 Actinidia chinensis HOM05D001669 ORTHO05D006496 3.6e-06 55.5 97 42.3


User provided reference genes

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