Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 7.0e-56 220.3 107 100.0
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 2.7e-47 191.8 107 83.2
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 2.9e-41 171.8 85 97.6
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 2.1e-36 155.6 107 68.2
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 1.4e-32 142.9 107 59.8
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 2.4e-32 142.1 107 59.8
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 4.8e-28 127.9 107 53.3
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 4.8e-28 127.9 76 84.2
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 4.8e-28 127.9 76 84.2
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 6.2e-28 127.5 108 53.7
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 1.1e-27 126.7 107 53.3
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 4.0e-27 124.8 107 54.2
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 4.0e-27 124.8 107 54.2
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 4.0e-27 124.8 107 54.2
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 5.3e-27 124.4 107 53.3
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 5.3e-27 124.4 107 52.3
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 5.3e-27 124.4 107 54.2
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 6.9e-27 124.0 107 56.1
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 9.0e-27 123.6 108 55.6
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.2e-26 123.2 108 52.8
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 1.5e-26 122.9 108 50.0
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 1.5e-26 122.9 107 56.1
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 2.0e-26 122.5 107 51.4
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 2.0e-26 122.5 107 55.1
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 2.6e-26 122.1 108 54.6
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 3.4e-26 121.7 108 53.7
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 3.4e-26 121.7 107 54.2
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 4.5e-26 121.3 108 52.8
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 4.5e-26 121.3 108 53.7
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 4.5e-26 121.3 107 53.3
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 4.5e-26 121.3 108 52.8
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 5.8e-26 120.9 108 54.6
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 7.6e-26 120.6 107 53.3
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 9.9e-26 120.2 107 51.4
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 9.9e-26 120.2 108 53.7
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.3e-25 119.8 107 51.4
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 1.3e-25 119.8 107 51.4
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.3e-25 119.8 108 51.9
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 1.7e-25 119.4 108 53.7
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 2.2e-25 119.0 107 49.5
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 2.2e-25 119.0 107 48.6
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 2.2e-25 119.0 108 51.9
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 2.2e-25 119.0 108 53.7
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 2.2e-25 119.0 107 49.5
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 2.9e-25 118.6 107 51.4
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 3.8e-25 118.2 108 53.7
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 3.8e-25 118.2 108 50.0
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 3.8e-25 118.2 107 48.6
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 3.8e-25 118.2 108 53.7
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 6.4e-25 117.5 107 51.4
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 6.4e-25 117.5 108 54.6
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 8.4e-25 117.1 108 52.8
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 8.4e-25 117.1 107 50.5
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 8.4e-25 117.1 107 52.3
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 8.4e-25 117.1 107 53.3
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 8.4e-25 117.1 108 51.9
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 1.1e-24 116.7 107 51.4
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 1.1e-24 116.7 107 51.4
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 1.1e-24 116.7 109 52.3
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 1.4e-24 116.3 108 51.9
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 1.4e-24 116.3 107 47.7
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 1.4e-24 116.3 104 51.0
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 1.9e-24 115.9 109 52.3
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.9e-24 115.9 107 48.6
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 1.9e-24 115.9 107 51.4
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.9e-24 115.9 107 50.5
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 2.4e-24 115.5 107 53.3
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 2.4e-24 115.5 108 55.6
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 2.4e-24 115.5 107 50.5
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 3.2e-24 115.2 107 49.5
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 3.2e-24 115.2 108 48.1
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 4.2e-24 114.8 108 52.8
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 4.2e-24 114.8 107 50.5
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 4.2e-24 114.8 107 50.5
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 5.4e-24 114.4 107 51.4
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 7.1e-24 114.0 107 48.6
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 7.1e-24 114.0 107 51.4
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 1.2e-23 113.2 107 48.6
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 1.2e-23 113.2 108 50.9
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 1.2e-23 113.2 108 51.9
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 1.2e-23 113.2 107 47.7
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.2e-23 113.2 107 47.7
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 1.6e-23 112.8 107 51.4
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 1.6e-23 112.8 107 52.3
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 1.6e-23 112.8 107 49.5
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 2.1e-23 112.5 108 50.9
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 2.1e-23 112.5 108 50.9
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 2.1e-23 112.5 108 50.0
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 2.7e-23 112.1 107 47.7
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 2.7e-23 112.1 107 48.6
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 2.7e-23 112.1 106 49.1
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 3.5e-23 111.7 107 49.5
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 3.5e-23 111.7 108 51.9
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 3.5e-23 111.7 107 48.6
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 4.6e-23 111.3 107 47.7
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 6.0e-23 110.9 107 50.5
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 7.9e-23 110.5 107 51.4
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 7.9e-23 110.5 108 48.1
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 1.3e-22 109.8 107 45.8
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 1.8e-22 109.4 108 50.9
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 1.8e-22 109.4 108 50.0
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 3.0e-22 108.6 87 60.9
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 3.9e-22 108.2 108 46.3
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 5.1e-22 107.8 107 47.7
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 5.1e-22 107.8 107 44.9
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 5.1e-22 107.8 107 49.5
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 5.1e-22 107.8 107 49.5
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 8.7e-22 107.1 108 49.1
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 8.7e-22 107.1 106 46.2
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 1.5e-21 106.3 108 47.2
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 1.5e-21 106.3 107 44.9
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 2.5e-21 105.5 107 47.7
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 7.4e-21 104.0 108 49.1
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 7.4e-21 104.0 108 49.1
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 1.3e-20 103.2 107 43.9
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 1.3e-20 103.2 111 47.7
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.6e-20 102.8 108 49.1
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 2.1e-20 102.4 100 49.0
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 2.8e-20 102.1 107 43.0
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 3.1e-19 98.6 90 50.0
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 6.9e-19 97.4 95 49.5
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 6.9e-19 97.4 106 42.5
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 6.9e-19 97.4 89 48.3
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 1.2e-18 96.7 85 50.6
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 2.6e-18 95.5 108 43.5
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 7.6e-18 94.0 85 50.6
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.3e-17 93.2 90 46.7
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.7e-17 92.8 90 46.7
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 2.2e-17 92.4 85 49.4
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 2.2e-17 92.4 85 47.1
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 3.8e-17 91.7 86 48.8
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 6.4e-17 90.9 85 49.4
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 6.4e-17 90.9 103 39.8
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 6.4e-17 90.9 86 50.0
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 1.1e-16 90.1 86 48.8
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 1.4e-16 89.7 85 49.4
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 3.2e-16 88.6 99 41.4
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 3.2e-16 88.6 88 45.5
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 4.2e-16 88.2 85 50.6
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 5.5e-16 87.8 86 51.2
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 7.1e-16 87.4 95 47.4
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 9.3e-16 87.0 110 46.4
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.6e-15 86.3 99 41.4
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 1.6e-15 86.3 85 49.4
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 2.1e-15 85.9 107 41.1
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 4.6e-15 84.7 90 44.4
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 7.9e-15 84.0 86 48.8
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 1.0e-14 83.6 83 49.4
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 1.1e-13 80.1 87 49.4
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 5.6e-13 77.8 82 47.6
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 2.1e-12 75.9 71 43.7
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 4.8e-12 74.7 65 52.3
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 4.8e-12 74.7 85 43.5
Zm00001eb011350 Zea mays HOM05D001168 ORTHO05D001044 1.5e-10 69.7 33 93.9
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 2.9e-09 65.5 112 38.4
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 4.9e-09 64.7 109 31.2
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 4.9e-09 64.7 78 41.0
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 1.1e-08 63.5 87 40.2
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 4.6e-07 58.2 57 49.1


User provided reference genes

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