Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 3.6e-299 1030.8 508 100.0
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 5.3e-202 708.0 513 68.8
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.4e-201 705.3 512 67.6
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 1.7e-200 703.0 518 67.4
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 5.5e-199 698.0 525 66.1
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 3.5e-198 695.3 515 66.8
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 1.0e-197 693.7 516 67.1
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 7.4e-196 687.6 500 67.0
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 6.3e-195 684.5 510 65.9
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 8.2e-195 684.1 512 66.8
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 2.4e-194 682.6 514 65.2
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 3.1e-194 682.2 507 65.5
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 4.1e-194 681.8 510 64.3
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 4.1e-194 681.8 511 65.6
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.1e-194 681.8 489 68.7
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.2e-193 680.2 511 65.0
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 2.0e-193 679.5 514 66.9
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 2.0e-193 679.5 511 65.9
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 2.6e-193 679.1 510 65.7
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 4.5e-193 678.3 510 65.1
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 4.5e-193 678.3 510 64.9
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 1.7e-192 676.4 502 65.9
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 5.0e-192 674.9 510 63.5
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 5.0e-192 674.9 509 65.2
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 5.0e-192 674.9 510 63.7
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 6.5e-192 674.5 506 64.6
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 8.5e-192 674.1 508 65.2
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 1.4e-191 673.3 507 64.3
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.9e-191 672.9 506 64.2
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 2.5e-191 672.5 508 65.6
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 3.2e-191 672.2 512 64.6
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 3.2e-191 672.2 510 65.1
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 4.2e-191 671.8 514 63.2
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 5.5e-191 671.4 506 64.0
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 9.4e-191 670.6 508 64.2
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 1.6e-190 669.8 515 65.8
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 2.1e-190 669.5 515 65.2
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 2.1e-190 669.5 514 65.2
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 2.7e-190 669.1 500 65.0
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 7.9e-190 667.5 510 65.1
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 7.9e-190 667.5 509 64.4
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 1.0e-189 667.2 514 64.6
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 2.3e-189 666.0 510 64.3
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 3.0e-189 665.6 510 64.9
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 1.1e-188 663.7 511 63.6
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.5e-188 662.5 517 64.8
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 4.3e-188 661.8 505 65.3
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 7.4e-188 661.0 510 63.9
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 7.4e-188 661.0 508 64.0
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 2.8e-187 659.1 515 64.3
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 2.8e-187 659.1 515 64.5
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 8.2e-187 657.5 499 64.3
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 8.2e-187 657.5 472 69.1
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.1e-186 657.1 506 64.0
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.1e-186 657.1 550 61.6
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 2.4e-186 656.0 499 64.1
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 9.1e-186 654.1 514 63.8
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 1.5e-185 653.3 504 63.9
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.5e-185 653.3 508 63.4
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 2.0e-185 652.9 509 63.7
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 2.6e-185 652.5 500 64.0
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.6e-185 652.5 501 63.7
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 3.4e-185 652.1 510 63.9
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 4.5e-185 651.7 510 63.1
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 4.5e-185 651.7 504 63.9
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 5.9e-185 651.4 506 63.4
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 5.9e-185 651.4 511 63.0
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 5.9e-185 651.4 501 63.7
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 7.7e-185 651.0 509 63.5
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 7.7e-185 651.0 509 63.5
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 1.0e-184 650.6 546 59.9
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 1.3e-184 650.2 506 63.2
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 2.2e-184 649.4 546 59.7
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 2.2e-184 649.4 506 63.4
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 2.2e-184 649.4 504 63.5
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 2.2e-184 649.4 504 63.9
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 2.2e-184 649.4 519 64.0
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 3.8e-184 648.7 505 64.2
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 6.5e-184 647.9 509 63.9
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 8.5e-184 647.5 505 63.2
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 8.5e-184 647.5 498 63.3
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.4e-183 646.7 509 63.1
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 1.9e-183 646.4 514 63.8
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 3.2e-183 645.6 509 63.5
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 4.2e-183 645.2 501 63.3
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 5.5e-183 644.8 515 63.1
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 5.5e-183 644.8 496 64.3
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 9.4e-183 644.0 510 62.7
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 1.2e-182 643.7 507 63.3
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 1.6e-182 643.3 500 63.4
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 2.3e-181 639.4 507 62.9
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 2.3e-181 639.4 485 63.9
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.1e-180 637.1 514 63.0
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 9.7e-180 634.0 503 62.4
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 2.2e-179 632.9 467 66.8
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 6.3e-179 631.3 483 64.0
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 1.2e-177 627.1 586 55.8
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 1.2e-177 627.1 456 69.1
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.0e-177 626.3 511 61.8
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 3.5e-177 625.5 506 62.5
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.5e-177 625.5 511 61.8
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 3.5e-177 625.5 477 65.8
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 4.5e-177 625.2 501 61.3
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 5.9e-177 624.8 510 60.4
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 1.0e-173 614.0 446 66.1
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.0e-173 614.0 603 55.1
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.4e-170 603.6 501 59.9
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 5.3e-170 601.7 458 64.2
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 7.0e-170 601.3 513 58.9
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 1.2e-169 600.5 512 59.6
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.0e-168 597.4 512 60.5
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.8e-168 595.5 512 60.2
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 5.0e-168 595.1 509 59.9
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 8.5e-168 594.3 509 61.1
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 2.5e-167 592.8 568 57.2
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 1.2e-166 590.5 514 60.1
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 6.7e-165 584.7 524 57.8
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.5e-164 583.6 536 57.3
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 2.8e-163 579.3 514 59.1
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 3.1e-162 575.9 460 62.4
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.1e-162 575.9 528 57.8
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 1.1e-154 550.8 472 61.0
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 2.4e-146 523.1 402 64.2
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 4.1e-146 522.3 547 52.3
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 5.4e-146 521.9 526 52.3
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 2.7e-145 519.6 404 65.3
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 8.9e-141 504.6 662 45.2
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 2.9e-139 499.6 418 60.5
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 3.7e-131 472.6 526 50.8
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 3.0e-128 463.0 455 54.5
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 1.6e-113 414.1 501 46.9
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 2.9e-107 393.3 335 58.5
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.0e-104 384.8 275 68.7
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 5.1e-104 382.5 279 67.4
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 4.0e-101 372.9 251 70.9
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 9.3e-98 361.7 272 65.1
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 1.1e-95 354.8 259 66.8
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 5.3e-85 319.3 244 67.2
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 4.1e-69 266.5 211 62.6
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 1.0e-67 261.9 506 35.8
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 6.5e-67 259.2 577 31.4
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 2.4e-61 240.7 209 60.8
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 5.3e-61 239.6 135 83.7
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.6e-57 228.0 388 35.8
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 6.3e-38 162.9 197 43.7
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.4e-37 161.0 185 45.9
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 1.0e-35 155.6 108 68.5
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.7e-30 138.3 127 55.9
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.7e-27 128.3 252 36.9
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 5.0e-27 126.7 252 36.5
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 1.5e-26 125.2 68 80.9
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.7e-22 111.7 112 50.9
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.3e-19 102.1 63 74.6
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 3.3e-18 97.4 179 29.6
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 5.6e-18 96.7 81 59.3
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 4.4e-15 87.0 112 42.9
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 1.9e-10 71.6 85 44.7
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 2.1e-09 68.2 61 55.7
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 2.8e-09 67.8 124 33.1
PRCOL_00005868 Prasinoderma coloniale HOM05D000740 ORTHO05D007141 1.4e-08 65.5 123 32.5
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 1.2e-07 62.4 152 32.2
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.4e-07 60.8 35 77.1
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.9e-06 57.0 36 69.4


User provided reference genes

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