Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 2.0e-175 619.0 314 100.0
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 9.1e-128 460.7 318 75.8
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 2.6e-82 309.7 315 52.4
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 3.4e-82 309.3 317 51.4
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 4.9e-81 305.4 315 50.8
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 8.3e-81 304.7 312 52.2
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 8.3e-81 304.7 314 51.0
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 1.4e-80 303.9 320 50.6
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 1.4e-80 303.9 320 51.2
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 4.1e-80 302.4 317 50.2
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 4.1e-80 302.4 313 50.5
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 1.2e-79 300.8 316 49.4
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 3.5e-79 299.3 314 50.6
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 4.6e-79 298.9 311 50.2
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 6.0e-79 298.5 317 50.5
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 1.3e-78 297.4 317 50.2
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 1.7e-78 297.0 314 49.4
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 3.0e-78 296.2 318 50.6
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 3.0e-78 296.2 314 49.4
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 3.9e-78 295.8 314 50.6
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 1.5e-77 293.9 313 49.2
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 1.5e-77 293.9 319 50.8
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 2.5e-77 293.1 310 50.3
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 4.3e-77 292.4 319 50.2
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 9.5e-77 291.2 318 49.1
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 9.5e-77 291.2 321 50.2
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 1.2e-76 290.8 314 49.7
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 1.2e-76 290.8 317 49.8
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 2.1e-76 290.0 328 47.9
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 4.7e-76 288.9 314 48.1
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 4.7e-76 288.9 313 49.5
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 8.1e-76 288.1 311 50.5
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 1.1e-75 287.7 315 49.5
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 1.4e-75 287.3 318 48.4
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 1.4e-75 287.3 342 46.2
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 1.8e-75 287.0 310 50.0
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 1.8e-75 287.0 310 48.7
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 2.3e-75 286.6 322 50.0
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 3.1e-75 286.2 316 48.4
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 5.2e-75 285.4 313 49.8
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 1.2e-74 284.3 316 47.2
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 1.2e-74 284.3 317 47.3
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 4.4e-74 282.3 315 48.6
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 9.9e-74 281.2 310 47.1
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 1.3e-73 280.8 312 49.0
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.2e-73 280.0 309 48.9
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 2.9e-73 279.6 320 47.8
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 6.4e-73 278.5 319 47.3
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 3.2e-72 276.2 266 52.3
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 5.4e-72 275.4 262 50.4
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 9.2e-72 274.6 309 46.3
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 1.2e-71 274.2 317 46.4
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 1.6e-71 273.9 317 46.7
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 1.6e-71 273.9 314 50.0
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.1e-71 273.5 309 48.9
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 6.0e-71 271.9 319 47.3
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 1.3e-70 270.8 317 49.5
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 2.3e-70 270.0 314 46.2
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 3.0e-70 269.6 317 46.7
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.0e-70 269.6 265 50.9
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 1.5e-69 267.3 308 46.8
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 1.9e-69 266.9 313 45.4
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 3.3e-69 266.2 264 50.4
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 7.3e-69 265.0 315 47.6
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 1.2e-68 264.2 312 45.8
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 1.6e-68 263.8 328 45.7
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 6.2e-68 261.9 314 45.2
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 3.1e-67 259.6 313 46.3
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 4.0e-67 259.2 315 46.3
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 4.0e-67 259.2 312 45.5
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 5.2e-67 258.8 316 47.8
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 1.5e-66 257.3 311 46.0
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 2.0e-66 256.9 311 45.7
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 4.4e-66 255.8 311 45.7
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 4.4e-66 255.8 311 45.7
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 9.9e-66 254.6 311 45.0
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 1.7e-65 253.8 366 41.5
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 2.2e-65 253.4 314 44.9
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 2.9e-65 253.1 314 47.5
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 2.4e-64 250.0 264 47.7
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 7.1e-64 248.4 318 45.9
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 1.3e-62 244.2 266 45.9
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 6.6e-62 241.9 247 51.4
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 4.8e-60 235.7 318 44.7
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 6.2e-60 235.3 310 42.3
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 5.3e-59 232.3 373 40.2
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 1.2e-58 231.1 318 41.2
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 2.2e-57 226.9 232 48.7
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 8.4e-57 224.9 317 42.9
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 7.1e-56 221.9 315 42.9
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 2.1e-55 220.3 334 39.2
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 7.9e-55 218.4 315 41.0
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 3.9e-54 216.1 324 40.7
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 2.1e-52 210.3 246 46.7
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 2.8e-52 209.9 191 53.9
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.6e-52 209.5 212 50.9
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 3.1e-51 206.5 307 39.4
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 2.9e-49 199.9 319 40.8
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 2.6e-42 176.8 165 53.3
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 6.5e-41 172.2 311 37.0
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 8.4e-41 171.8 228 40.4
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 1.9e-40 170.6 314 33.1
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 3.5e-39 166.4 272 36.0
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 5.3e-27 125.9 188 37.2
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 1.1e-24 118.2 117 48.7
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.1e-24 118.2 123 47.2
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 5.5e-24 115.9 124 46.8
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.2e-23 114.8 111 50.5
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 7.9e-23 112.1 132 45.5
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 2.3e-22 110.5 95 52.6
Cre07.g351400 Chlamydomonas reinhardtii HOM05D006199 ORTHO05D006558 6.3e-20 102.4 276 29.3
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 2.9e-17 93.6 123 40.7
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 1.9e-16 90.9 117 41.0
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 5.5e-16 89.4 193 36.3
CBR_g870 Chara braunii HOM05D006199 ORTHO05D006558 4.4e-13 79.7 198 30.3
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 2.2e-12 77.4 74 48.6
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 4.1e-11 73.2 77 44.2
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 7.0e-11 72.4 57 56.1
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 7.7e-10 68.9 55 56.4
FAN06G2201 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.0e-09 68.6 124 37.1
FvH4_7g17270 Fragaria vesca HOM05D006199 ORTHO05D006558 1.7e-09 67.8 81 42.0
HanXRQChr15g0479941 Helianthus annuus HOM05D006199 ORTHO05D006558 6.5e-09 65.9 74 47.3
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 6.5e-09 65.9 215 25.6
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 9.4e-08 62.0 61 49.2
CDE02G3657 Ceratophyllum demersum HOM05D006199 ORTHO05D006558 4.7e-07 59.7 108 41.7


User provided reference genes

Program Settings