Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb331720 Zea mays HOM05D003173 ORTHO05D003546 2.2e-126 455.7 231 100.0
Zm00001eb103980 Zea mays HOM05D003173 ORTHO05D003546 9.8e-71 270.8 239 69.9
Os09g0542900 Oryza sativa ssp. japonica HOM05D003173 ORTHO05D003546 2.4e-40 169.9 230 49.6
Gohir.A05G182800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 3.2e-13 79.7 162 39.5
Gorai.009G191200 Gossypium raimondii HOM05D003173 ORTHO05D003546 3.5e-12 76.3 213 35.2
Nn6g31907 Nelumbo nucifera HOM05D003173 ORTHO05D003546 4.6e-12 75.9 234 34.6
MSTRG.24229 Avicennia marina HOM05D003173 ORTHO05D003546 1.3e-11 74.3 220 31.8
Gohir.D05G185800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 2.3e-11 73.6 191 35.6
PGR031G0086 Punica granatum HOM05D003173 ORTHO05D003546 2.3e-11 73.6 208 37.5
Glyma.14G222400 Glycine max HOM05D003173 ORTHO05D003546 8.7e-11 71.6 239 31.8
Duzib116G0616 Durio zibethinus HOM05D003173 ORTHO05D003546 1.5e-10 70.9 183 34.4
MBI09_g01020_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 1.5e-10 70.9 237 33.3
QL02p012938 Quercus lobata HOM05D003173 ORTHO05D003546 1.9e-10 70.5 226 31.4
vmacro04379 Vaccinium macrocarpon HOM05D003173 ORTHO05D003546 3.3e-10 69.7 178 36.0
HPP92_002481 Vanilla planifolia HOM05D003173 ORTHO05D003546 5.7e-10 68.9 198 35.4
CsaV3_3G046130 Cucumis sativus L. HOM05D003173 ORTHO05D003546 1.6e-09 67.4 174 36.2
Gohir.A05G255800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 3.7e-09 66.2 196 32.1
Gohir.D05G257500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 4.8e-09 65.9 194 32.5
MELO3C003727.2 Cucumis melo HOM05D003173 ORTHO05D003546 6.3e-09 65.5 187 35.8
Gorai.009G268900 Gossypium raimondii HOM05D003173 ORTHO05D003546 6.3e-09 65.5 196 32.7
ClCG05G015410 Citrullus lanatus HOM05D003173 ORTHO05D003546 1.1e-08 64.7 195 32.8
Thhalv10018992m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 1.1e-08 64.7 161 35.4
Aqoxy6G01958 Aquilegia oxysepala HOM05D003173 ORTHO05D003546 1.4e-08 64.3 227 30.0
Duzib093G0730 Durio zibethinus HOM05D003173 ORTHO05D003546 1.4e-08 64.3 245 31.8
Glyma.17G261300 Glycine max HOM05D003173 ORTHO05D003546 1.4e-08 64.3 200 32.5
TAR381G1677 Trochodendron aralioides HOM05D003173 ORTHO05D003546 1.4e-08 64.3 147 36.1
BolC6t40040H Brassica oleracea HOM05D003173 ORTHO05D003546 1.8e-08 63.9 150 35.3
COL.COLO4_26083 Corchorus olitorius HOM05D003173 ORTHO05D003546 1.8e-08 63.9 243 30.9
BraA07t31692Z Brassica rapa HOM05D003173 ORTHO05D003546 3.1e-08 63.2 171 36.3
Thhalv10009337m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 4.1e-08 62.8 187 33.7
Sp5g31190 Schrenkiella parvula HOM05D003173 ORTHO05D003546 4.1e-08 62.8 165 34.5
BcaC08g47100 Brassica carinata HOM05D003173 ORTHO05D003546 6.9e-08 62.0 170 34.7
A07p41630 Brassica napus HOM05D003173 ORTHO05D003546 6.9e-08 62.0 149 36.2
Phvul.001G002200 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 6.9e-08 62.0 239 30.1
THA.LOC104811444 Tarenaya hassleriana HOM05D003173 ORTHO05D003546 6.9e-08 62.0 186 35.5
Thecc.08G051800 Theobroma cacao HOM05D003173 ORTHO05D003546 6.9e-08 62.0 223 30.0
VMungo0647G1822 Vigna mungo HOM05D003173 ORTHO05D003546 6.9e-08 62.0 237 32.1
Psat6g001080 Pisum sativum HOM05D003173 ORTHO05D003546 9.0e-08 61.6 178 33.1
Carub.0002s2296 Capsella rubella HOM05D003173 ORTHO05D003546 1.2e-07 61.2 171 33.3
AT1G76070 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 1.5e-07 60.8 167 32.9
BcaC03g15643 Brassica carinata HOM05D003173 ORTHO05D003546 1.5e-07 60.8 158 38.6
BolC2t09356H Brassica oleracea HOM05D003173 ORTHO05D003546 1.5e-07 60.8 158 38.6
CiPaw.07G143600 Carya illinoinensis HOM05D003173 ORTHO05D003546 1.5e-07 60.8 187 30.5
PSO541G5041 Papaver somniferum HOM05D003173 ORTHO05D003546 1.5e-07 60.8 178 33.7
A06p16390 Brassica napus HOM05D003173 ORTHO05D003546 2.0e-07 60.5 192 30.7
C02p33480 Brassica napus HOM05D003173 ORTHO05D003546 2.0e-07 60.5 157 37.6
Manes.18G009300 Manihot esculenta HOM05D003173 ORTHO05D003546 2.0e-07 60.5 247 31.2
CDE05G3154 Ceratophyllum demersum HOM05D001535 ORTHO05D003710 2.6e-07 60.1 181 30.9
Nn5g30846 Nelumbo nucifera HOM05D003173 ORTHO05D003546 2.6e-07 60.1 212 32.1
SalBow7G1496 Salvia bowleyana HOM05D003173 ORTHO05D003546 2.6e-07 60.1 200 31.0
TAR628G1607 Trochodendron aralioides HOM05D003173 ORTHO05D003546 2.6e-07 60.1 234 29.1
BcaB07g32036 Brassica carinata HOM05D003173 ORTHO05D003546 4.5e-07 59.3 145 36.6
Sp1g18040 Schrenkiella parvula HOM05D003173 ORTHO05D003546 4.5e-07 59.3 172 34.3
TPR.G26427 Trifolium pratense HOM05D003173 ORTHO05D003546 4.5e-07 59.3 183 31.1
FAN20G0850 Fragaria x ananassa HOM05D003173 ORTHO05D003546 5.9e-07 58.9 203 34.5
Peaxi162Scf00744g00026 Petunia axillaris HOM05D003173 ORTHO05D003546 5.9e-07 58.9 194 33.0
BolC7t42850H Brassica oleracea HOM05D003173 ORTHO05D003546 7.7e-07 58.5 172 34.9
CSS0021479 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 7.7e-07 58.5 155 32.3
Cpa.g.sc26.264 Carica papaya HOM05D003173 ORTHO05D003546 7.7e-07 58.5 146 34.2
Os11g0153300 Oryza sativa ssp. japonica HOM05D003139 ORTHO05D003540 7.7e-07 58.5 152 37.5
Medtr1g026110 Medicago truncatula HOM05D003173 ORTHO05D003546 1.0e-06 58.2 187 32.6
TAR376G0945 Trochodendron aralioides HOM05D003173 ORTHO05D003546 1.0e-06 58.2 238 28.6
A07p15740 Brassica napus HOM05D003173 ORTHO05D003546 1.3e-06 57.8 167 31.7
A07p15840 Brassica napus HOM05D003173 ORTHO05D003546 1.3e-06 57.8 167 31.7
BraA06t24743Z Brassica rapa HOM05D003173 ORTHO05D003546 1.3e-06 57.8 167 32.3
BraA07t29310Z Brassica rapa HOM05D003173 ORTHO05D003546 1.3e-06 57.8 167 31.7
Ca_13485_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 1.3e-06 57.8 185 30.3
Haze_22703 Corylus avellana HOM05D003173 ORTHO05D003546 1.3e-06 57.8 160 35.6
FAN15G3480 Fragaria x ananassa HOM05D003173 ORTHO05D003546 1.3e-06 57.8 247 32.4
SGA_v2.0_scaffold19G08585 Striga asiatica HOM05D003173 ORTHO05D003546 1.3e-06 57.8 174 31.6
CiPaw.08G069200 Carya illinoinensis HOM05D003173 ORTHO05D003546 1.7e-06 57.4 141 36.2
CSS0028811 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 2.2e-06 57.0 155 31.6
FAN27G2702 Fragaria x ananassa HOM05D003173 ORTHO05D003546 2.2e-06 57.0 168 35.7
CSS0006148 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 2.9e-06 56.6 184 32.6
BcaNung03372 Brassica carinata HOM05D003173 ORTHO05D003546 3.8e-06 56.2 175 32.6
C07p23130 Brassica napus HOM05D003173 ORTHO05D003546 3.8e-06 56.2 175 32.6
Ciclev10002153m.g Citrus clementina HOM05D003173 ORTHO05D003546 3.8e-06 56.2 165 30.3
BcaC05g25935 Brassica carinata HOM05D003173 ORTHO05D003546 5.0e-06 55.8 163 31.9
C05p18890 Brassica napus HOM05D003173 ORTHO05D003546 5.0e-06 55.8 163 31.9
BolC5t30588H Brassica oleracea HOM05D003173 ORTHO05D003546 5.0e-06 55.8 163 31.9
PGSC0003DMG400009955 Solanum tuberosum HOM05D003173 ORTHO05D003546 5.0e-06 55.8 110 39.1
A02p20410 Brassica napus HOM05D003173 ORTHO05D003546 6.5e-06 55.5 155 35.5
C06p50010 Brassica napus HOM05D003173 ORTHO05D003546 6.5e-06 55.5 150 33.3
Prupe.7G175300 Prunus persica HOM05D003173 ORTHO05D003546 6.5e-06 55.5 150 34.7
Actinidia15462 Actinidia chinensis HOM05D003173 ORTHO05D003546 8.5e-06 55.1 218 30.7


User provided reference genes

Program Settings