Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 3.6e-177 624.8 307 100.0
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 4.7e-161 571.2 307 91.2
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 1.3e-126 456.8 297 69.7
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 2.0e-124 449.5 309 67.6
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 3.9e-123 445.3 299 67.2
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 1.9e-122 443.0 307 66.8
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 2.5e-122 442.6 297 67.3
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 2.5e-122 442.6 297 67.0
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 4.3e-122 441.8 297 66.0
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 5.6e-122 441.4 307 65.5
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 5.6e-122 441.4 297 67.0
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 9.5e-122 440.7 297 67.0
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 1.2e-121 440.3 304 66.1
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 1.2e-121 440.3 297 67.7
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 1.6e-121 439.9 297 66.7
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 2.1e-121 439.5 307 65.5
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 2.8e-121 439.1 296 66.9
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 4.7e-121 438.3 305 66.2
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 1.1e-120 437.2 297 66.7
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 1.1e-120 437.2 307 66.4
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 1.8e-120 436.4 305 65.9
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 3.1e-120 435.6 297 67.0
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 4.0e-120 435.3 307 65.8
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 6.8e-120 434.5 304 64.8
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 6.8e-120 434.5 297 66.3
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.2e-119 433.7 297 65.3
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 1.2e-119 433.7 297 65.3
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 1.5e-119 433.3 297 66.0
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 1.5e-119 433.3 297 67.3
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 2.0e-119 433.0 307 65.8
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 2.0e-119 433.0 297 66.0
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 2.0e-119 433.0 297 65.7
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 2.6e-119 432.6 300 65.3
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 2.6e-119 432.6 307 64.2
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 2.6e-119 432.6 297 66.0
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 3.4e-119 432.2 297 65.7
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 3.4e-119 432.2 304 66.8
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 7.5e-119 431.0 300 65.3
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 9.8e-119 430.6 297 64.6
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 1.7e-118 429.9 307 63.8
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 2.2e-118 429.5 297 65.7
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 2.9e-118 429.1 299 66.6
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 2.9e-118 429.1 299 66.2
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 2.9e-118 429.1 307 65.8
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 2.9e-118 429.1 306 64.4
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 4.9e-118 428.3 297 66.0
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 6.4e-118 427.9 307 64.5
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 8.3e-118 427.6 308 65.6
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 1.1e-117 427.2 297 65.3
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 1.1e-117 427.2 297 64.3
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 1.1e-117 427.2 307 63.8
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 1.9e-117 426.4 297 65.3
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 3.2e-117 425.6 297 65.0
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 3.2e-117 425.6 304 65.8
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 9.2e-117 424.1 304 65.5
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 1.2e-116 423.7 304 65.5
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 2.1e-116 422.9 297 65.7
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 2.1e-116 422.9 308 63.6
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 3.5e-116 422.2 304 65.5
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 4.6e-116 421.8 309 63.8
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 7.8e-116 421.0 296 64.2
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 7.8e-116 421.0 297 64.6
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 7.8e-116 421.0 297 65.0
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 1.3e-115 420.2 297 66.0
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 3.0e-115 419.1 297 64.6
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 3.0e-115 419.1 297 64.3
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 3.9e-115 418.7 308 64.0
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 5.1e-115 418.3 297 65.7
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 6.6e-115 417.9 297 64.0
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 8.6e-115 417.5 295 65.1
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 8.6e-115 417.5 295 65.1
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 1.5e-114 416.8 297 65.0
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 4.3e-114 415.2 297 64.6
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 7.3e-114 414.5 304 62.2
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 1.6e-113 413.3 296 65.2
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 2.1e-113 412.9 297 65.3
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.1e-113 412.9 297 61.6
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 2.1e-113 412.9 297 63.6
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 2.1e-113 412.9 297 63.6
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 3.6e-113 412.1 297 63.0
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 6.2e-113 411.4 296 64.9
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 1.1e-112 410.6 297 64.3
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 1.8e-112 409.8 297 63.6
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 2.3e-112 409.5 302 64.9
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 2.3e-112 409.5 297 64.3
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 4.0e-112 408.7 296 63.9
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 4.0e-112 408.7 381 53.0
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 8.9e-112 407.5 296 63.9
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 3.4e-111 405.6 297 63.6
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 3.4e-111 405.6 383 52.2
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 7.6e-111 404.4 297 63.6
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 1.3e-110 403.7 307 63.8
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 2.9e-110 402.5 306 61.8
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 6.4e-110 401.4 295 63.4
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 1.4e-109 400.2 296 62.5
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 2.4e-109 399.4 295 63.4
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 2.7e-108 396.0 302 62.3
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 3.5e-108 395.6 321 56.7
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 5.1e-107 391.7 297 61.3
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 5.1e-107 391.7 333 56.2
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 9.6e-106 387.5 306 60.1
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 2.1e-105 386.3 297 60.6
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 3.4e-103 379.0 216 84.7
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 1.9e-98 363.2 271 61.3
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 4.5e-95 352.1 294 54.4
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 9.9e-95 350.9 307 55.0
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 4.9e-94 348.6 259 61.4
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 2.4e-93 346.3 260 61.2
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 1.6e-92 343.6 257 62.3
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 5.6e-90 335.1 292 56.2
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 9.6e-90 334.3 238 61.8
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 6.9e-88 328.2 308 51.9
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 9.3e-85 317.8 294 53.1
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 2.7e-76 289.7 200 68.5
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 2.3e-75 286.6 268 53.4
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 1.5e-74 283.9 294 48.6
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 3.7e-73 279.3 198 63.6
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 1.4e-69 267.3 177 68.9
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 4.6e-68 262.3 239 51.5
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 6.7e-67 258.5 177 66.7
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 1.4e-59 234.2 179 63.7
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 1.3e-54 217.6 181 60.2
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 7.9e-52 208.4 187 51.3
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 2.4e-48 196.8 143 64.3
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 7.2e-45 185.3 170 52.4
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.4e-43 181.0 131 61.1
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.3e-41 174.5 129 59.7
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 6.3e-41 172.2 118 65.3
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 7.2e-37 158.7 107 69.2
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.8e-35 154.1 152 49.3
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 4.0e-35 152.9 118 55.1
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 3.5e-31 139.8 96 63.5
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.2e-28 131.3 95 56.8
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 6.1e-28 129.0 95 56.8
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 6.3e-25 119.0 100 49.0
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 3.2e-16 90.1 69 58.0
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.0e-11 75.1 52 65.4


User provided reference genes

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