Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb328690 Zea mays HOM05D006977 ORTHO05D008738 6.2e-100 367.5 187 100.0
Os07g0636400 Oryza sativa ssp. japonica HOM05D006977 ORTHO05D008738 7.2e-64 247.7 190 70.5
MBI19_g30288_MAGBIO Magnolia biondii HOM05D006977 ORTHO05D008738 8.8e-46 187.6 178 54.5
Nn4g24845 Nelumbo nucifera HOM05D006977 ORTHO05D008738 7.5e-45 184.5 179 52.0
HPP92_012764 Vanilla planifolia HOM05D006977 ORTHO05D008738 9.1e-43 177.6 176 50.6
TWI81G0461 Tripterygium wilfordii HOM05D006977 ORTHO05D008738 1.5e-40 170.2 164 53.0
TAR362G0624 Trochodendron aralioides HOM05D006977 ORTHO05D008738 1.2e-39 167.2 180 51.1
ATR0796G043 Amborella trichopoda HOM05D006977 ORTHO05D008738 2.1e-39 166.4 193 47.7
COL.COLO4_23128 Corchorus olitorius HOM05D006977 ORTHO05D008738 3.0e-38 162.5 170 50.6
FAN23G2129 Fragaria x ananassa HOM05D006977 ORTHO05D008738 5.2e-38 161.8 191 46.6
Prupe.3G002600 Prunus persica HOM05D006977 ORTHO05D008738 8.9e-38 161.0 170 48.2
Actinidia25872 Actinidia chinensis HOM05D006977 ORTHO05D008738 1.2e-37 160.6 183 47.5
Gohir.D11G109500 Gossypium hirsutum HOM05D006977 ORTHO05D008738 1.2e-37 160.6 166 51.2
Gorai.007G117100 Gossypium raimondii HOM05D006977 ORTHO05D008738 1.2e-37 160.6 166 51.2
Ca_17328_v3 Cicer arietinum L. HOM05D006977 ORTHO05D008738 2.0e-37 159.8 152 52.6
CSS0050251 Camellia sinensis var. sinensis HOM05D006977 ORTHO05D008738 3.4e-37 159.1 187 43.3
Cpa.g.sc112.76 Carica papaya HOM05D006977 ORTHO05D008738 3.4e-37 159.1 176 47.7
FAN19G2776 Fragaria x ananassa HOM05D006977 ORTHO05D008738 3.4e-37 159.1 190 45.8
PSO357G0421 Papaver somniferum HOM05D006977 ORTHO05D008738 4.4e-37 158.7 152 53.3
Lj5g0006261 Lotus japonicus HOM05D006977 ORTHO05D008738 5.7e-37 158.3 151 52.3
Gohir.A11G104700 Gossypium hirsutum HOM05D006977 ORTHO05D008738 7.5e-37 157.9 166 50.0
PSO170G4516 Papaver somniferum HOM05D006977 ORTHO05D008738 7.5e-37 157.9 153 53.6
Phvul.L002843 Phaseolus vulgaris HOM05D006977 ORTHO05D008738 7.5e-37 157.9 171 49.1
Psat7g015240 Pisum sativum HOM05D006977 ORTHO05D008738 1.3e-36 157.1 174 47.7
Thecc.01G325400 Theobroma cacao HOM05D006977 ORTHO05D008738 1.7e-36 156.8 167 50.9
Cfa004914 Carpinus fangiana HOM05D006977 ORTHO05D008738 2.2e-36 156.4 183 48.1
Dinv12080 Davidia involucrata HOM05D006977 ORTHO05D008738 2.2e-36 156.4 155 49.7
FAN26G0658 Fragaria x ananassa HOM05D006977 ORTHO05D008738 2.2e-36 156.4 191 45.5
Duzib133G0680 Durio zibethinus HOM05D006977 ORTHO05D008738 3.7e-36 155.6 166 50.0
Lsat_1_v5_gn_7_107761 Lactuca sativa HOM05D006977 ORTHO05D008738 4.9e-36 155.2 155 51.6
RcHm_v2.0_Chr3g0485771 Rosa chinensis HOM05D006977 ORTHO05D008738 4.9e-36 155.2 183 47.0
PGR042G1466 Punica granatum HOM05D006977 ORTHO05D008738 6.4e-36 154.8 159 51.6
QL05p057365 Quercus lobata HOM05D006977 ORTHO05D008738 6.4e-36 154.8 174 49.4
VMungo0720G2811 Vigna mungo HOM05D006977 ORTHO05D008738 8.3e-36 154.5 171 49.1
Atru.chr5.861 Acer truncatum HOM05D006977 ORTHO05D008738 1.1e-35 154.1 159 50.3
MSTRG.6995 Avicennia marina HOM05D006977 ORTHO05D008738 1.1e-35 154.1 159 47.8
Haze_05149 Corylus avellana HOM05D006977 ORTHO05D008738 1.1e-35 154.1 183 47.5
FAN28G2841 Fragaria x ananassa HOM05D006977 ORTHO05D008738 1.4e-35 153.7 186 45.7
ECA236G2063 Erigeron canadensis HOM05D006977 ORTHO05D008738 1.8e-35 153.3 171 46.8
HanXRQChr15g0493961 Helianthus annuus HOM05D006977 ORTHO05D008738 1.8e-35 153.3 151 53.0
Cpa.g.sc57.16 Carica papaya HOM05D006977 ORTHO05D008738 5.4e-35 151.8 178 47.8
GSVIVG01028248001 Vitis vinifera HOM05D006977 ORTHO05D008738 5.4e-35 151.8 151 52.3
Lalb_Chr11g0071671 Lupinus albus HOM05D006977 ORTHO05D008738 7.0e-35 151.4 165 49.1
Potri.014G112200 Populus trichocarpa HOM05D006977 ORTHO05D008738 1.2e-34 150.6 171 46.8
Aqoxy5G02822 Aquilegia oxysepala HOM05D006977 ORTHO05D008738 1.6e-34 150.2 145 51.0
CiPaw.08G082500 Carya illinoinensis HOM05D006977 ORTHO05D008738 2.0e-34 149.8 184 47.3
Medtr8g103265 Medicago truncatula HOM05D006977 ORTHO05D008738 2.0e-34 149.8 152 51.3
arahy.Tifrunner.gnm1.ann1.PT1J72 Arachis hypogaea HOM05D006977 ORTHO05D008738 2.7e-34 149.4 145 54.5
Cc04_g01560 Coffea canephora HOM05D006977 ORTHO05D008738 2.7e-34 149.4 158 48.1
Glyma.10G137900 Glycine max HOM05D006977 ORTHO05D008738 2.7e-34 149.4 167 47.3
Hma1.2p1_0484F.1_g162990 Hydrangea macrophylla HOM05D006977 ORTHO05D008738 2.7e-34 149.4 160 48.1
Sabra14G0082500 Salix brachista HOM05D006977 ORTHO05D008738 2.7e-34 149.4 157 49.0
Duzib268G1378 Durio zibethinus HOM05D006977 ORTHO05D008738 4.6e-34 148.7 140 55.7
Eucgr.A01003 Eucalyptus grandis HOM05D006977 ORTHO05D008738 5.9e-34 148.3 174 47.1
FvH4_1g26230 Fragaria vesca HOM05D006977 ORTHO05D008738 7.8e-34 147.9 148 50.7
Rhsim01G0293500 Rhododendron simsii HOM05D006977 ORTHO05D008738 7.8e-34 147.9 179 44.7
AUR62020194 Chenopodium quinoa HOM05D006977 ORTHO05D008738 1.0e-33 147.5 166 47.6
Ciclev10022352m.g Citrus clementina HOM05D006977 ORTHO05D008738 1.0e-33 147.5 155 47.7
Glyma.04G053700 Glycine max HOM05D006977 ORTHO05D008738 1.7e-33 146.7 184 44.6
MD09G1290400 Malus domestica HOM05D006977 ORTHO05D008738 2.3e-33 146.4 159 47.8
arahy.Tifrunner.gnm1.ann1.KP3I1I Arachis hypogaea HOM05D006977 ORTHO05D008738 6.6e-33 144.8 145 53.1
vmacro15094 Vaccinium macrocarpon HOM05D006977 ORTHO05D008738 1.5e-32 143.7 142 51.4
ClCG01G007180 Citrullus lanatus HOM05D006977 ORTHO05D008738 1.9e-32 143.3 178 45.5
AL6G51510 Arabidopsis lyrata HOM05D006977 ORTHO05D008738 3.3e-32 142.5 162 49.4
Hund02455 Selenicereus undatus HOM05D006977 ORTHO05D008738 3.3e-32 142.5 182 42.3
Carub.0006s3543 Capsella rubella HOM05D006977 ORTHO05D008738 4.3e-32 142.1 160 49.4
AUR62007556 Chenopodium quinoa HOM05D006977 ORTHO05D008738 4.3e-32 142.1 160 48.8
Manes.05G008900 Manihot esculenta HOM05D006977 ORTHO05D008738 5.6e-32 141.7 177 44.6
DCAR_012297 Daucus carota HOM05D006977 ORTHO05D008738 9.5e-32 141.0 165 44.8
Aa31LG5G1570 Aethionema arabicum HOM05D006977 ORTHO05D008738 2.1e-31 139.8 156 49.4
Thhalv10029024m.g Eutrema salsugineum HOM05D006977 ORTHO05D008738 4.7e-31 138.7 170 45.9
Sed0019401 Sechium edule HOM05D006977 ORTHO05D008738 4.7e-31 138.7 183 43.2
Migut.M01655 Erythranthe guttata HOM05D006977 ORTHO05D008738 6.2e-31 138.3 151 45.7
MELO3C005192.2 Cucumis melo HOM05D006977 ORTHO05D008738 8.0e-31 137.9 158 46.2
THA.LOC104799825 Tarenaya hassleriana HOM05D006977 ORTHO05D008738 1.0e-30 137.5 175 43.4
AT4G01790 Arabidopsis thaliana HOM05D006977 ORTHO05D008738 1.4e-30 137.1 162 46.3
Duzib268G1723 Durio zibethinus HOM05D006977 ORTHO05D008738 1.8e-30 136.7 176 46.0
CARHR249760 Cardamine hirsuta HOM05D006977 ORTHO05D008738 3.1e-30 136.0 170 44.1
EL10Ac6g15579 Beta vulgaris HOM05D006977 ORTHO05D008738 4.0e-30 135.6 146 49.3
CsaV3_5G018620 Cucumis sativus L. HOM05D006977 ORTHO05D008738 4.0e-30 135.6 151 47.0
Lj1A7G42 Lonicera japonica HOM05D006977 ORTHO05D008738 4.0e-30 135.6 123 52.8
BcaB01g02378 Brassica carinata HOM05D006977 ORTHO05D008738 1.2e-29 134.0 158 46.2
BolC3t16121H Brassica oleracea HOM05D006977 ORTHO05D008738 1.2e-29 134.0 169 46.2
C03p38480 Brassica napus HOM05D006977 ORTHO05D008738 2.0e-29 133.3 169 45.6
Sp3g31270 Schrenkiella parvula HOM05D006977 ORTHO05D008738 2.0e-29 133.3 162 45.1
SpUn0082_0020 Schrenkiella parvula HOM05D006977 ORTHO05D008738 2.0e-29 133.3 162 45.1
BcaC01g06803 Brassica carinata HOM05D006977 ORTHO05D008738 2.6e-29 132.9 158 46.8
Sc02g0004000 Simmondsia chinensis HOM05D006977 ORTHO05D008738 2.6e-29 132.9 159 42.8
PGSC0003DMG400001120 Solanum tuberosum HOM05D006977 ORTHO05D008738 7.5e-29 131.3 145 49.7
Duzib268G1823 Durio zibethinus HOM05D006977 ORTHO05D008738 9.8e-29 131.0 140 53.6
BraA03t12329Z Brassica rapa HOM05D006977 ORTHO05D008738 1.3e-28 130.6 169 45.6
A03p31490 Brassica napus HOM05D006977 ORTHO05D008738 2.9e-28 129.4 158 46.2
TPR.G23504 Trifolium pratense HOM05D006977 ORTHO05D008738 4.9e-28 128.6 119 53.8
Sopen01g030650 Solanum pennellii HOM05D006977 ORTHO05D008738 6.4e-28 128.3 145 46.9
Oeu031543.1 Olea europaea HOM05D006977 ORTHO05D008738 1.4e-27 127.1 151 43.7
Solyc01g080830.3 Solanum lycopersicum HOM05D006977 ORTHO05D008738 5.4e-27 125.2 145 45.5
CANSAT25G0488 Cannabis sativa HOM05D006977 ORTHO05D008738 7.0e-27 124.8 157 43.3
SGA_v2.0_scaffold204G41642 Striga asiatica HOM05D006977 ORTHO05D008738 1.2e-26 124.0 164 42.1
SalBow5G4120 Salvia bowleyana HOM05D006977 ORTHO05D008738 1.0e-25 120.9 152 44.7
Peaxi162Scf00309g00082 Petunia axillaris HOM05D006977 ORTHO05D008738 1.1e-24 117.5 122 50.8
CAN.G100.60 Capsicum annuum HOM05D006977 ORTHO05D008738 9.5e-24 114.4 121 47.9
CiPaw.07G125600 Carya illinoinensis HOM05D006977 ORTHO05D008738 2.1e-23 113.2 160 42.5
unitig_8.g4039 Utricularia gibba HOM05D006977 ORTHO05D008738 2.1e-23 113.2 168 38.1
Sp6g01640 Schrenkiella parvula HOM05D006977 ORTHO05D008738 3.4e-21 105.9 118 49.2
Nitab4.5_0003092g0050 Nicotiana tabacum HOM05D006977 ORTHO05D008738 5.8e-21 105.1 130 46.9
CDE02G1393 Ceratophyllum demersum HOM05D006977 ORTHO05D008738 7.5e-21 104.8 91 51.6
Nitab4.5_0000222g0410 Nicotiana tabacum HOM05D006977 ORTHO05D008738 1.9e-16 90.1 108 46.3
MD17G1285100 Malus domestica HOM05D006977 ORTHO05D008738 2.5e-16 89.7 72 52.8
CDE04G2744 Ceratophyllum demersum HOM05D006977 ORTHO05D008738 5.8e-13 78.6 110 41.8
Mapoly0147s0029 Marchantia polymorpha HOM05D006977 ORTHO05D008738 1.3e-12 77.4 128 35.9
Pp3c20_22530 Physcomitrium patens HOM05D006977 ORTHO05D008738 4.9e-12 75.5 184 32.6
SEGI_25216 Sequoiadendron giganteum HOM05D006977 ORTHO05D008738 1.8e-06 57.0 60 48.3
TWI81G0948 Tripterygium wilfordii HOM05D006977 ORTHO05D008738 6.8e-06 55.1 41 63.4


User provided reference genes

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