Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 1.1e-159 566.6 294 100.0
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 3.4e-137 491.9 299 88.0
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 5.2e-109 398.3 285 69.8
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.4e-108 395.2 298 69.5
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 1.7e-107 393.3 284 69.4
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 2.4e-106 389.4 284 69.4
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 3.8e-104 382.1 286 66.8
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 1.1e-103 380.6 291 67.7
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.5e-103 380.2 284 68.0
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 1.5e-103 380.2 284 67.6
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 2.5e-103 379.4 286 68.5
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 1.2e-102 377.1 286 66.4
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 1.6e-102 376.7 285 67.7
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 2.1e-102 376.3 286 67.1
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 6.1e-102 374.8 284 65.8
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 1.0e-101 374.0 290 67.6
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 1.4e-101 373.6 284 65.8
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 1.4e-101 373.6 287 67.9
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 3.0e-101 372.5 288 66.3
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 5.2e-101 371.7 285 67.0
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.5e-100 370.2 290 65.5
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 2.6e-100 369.4 290 65.2
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 3.4e-100 369.0 284 65.1
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 5.7e-100 368.2 294 65.3
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 7.5e-100 367.9 285 66.7
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.7e-99 366.7 285 66.7
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 4.9e-99 365.2 286 66.4
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 6.4e-99 364.8 291 66.0
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 6.4e-99 364.8 287 66.9
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 8.3e-99 364.4 290 64.5
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.4e-98 362.8 285 66.0
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 5.4e-98 361.7 285 64.6
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 7.0e-98 361.3 287 65.2
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 7.0e-98 361.3 284 63.4
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 7.0e-98 361.3 287 64.5
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 9.2e-98 360.9 268 69.0
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 9.2e-98 360.9 287 64.1
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.7e-97 359.4 268 69.0
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 2.7e-97 359.4 286 64.3
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 3.5e-97 359.0 293 64.8
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 3.5e-97 359.0 287 64.1
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 3.5e-97 359.0 285 64.9
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 5.9e-97 358.2 278 67.3
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 5.9e-97 358.2 287 64.5
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 5.9e-97 358.2 268 67.9
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 7.8e-97 357.8 285 64.6
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 7.8e-97 357.8 287 64.5
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 1.0e-96 357.5 287 64.5
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 3.9e-96 355.5 288 64.6
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 5.0e-96 355.1 285 65.6
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.1e-95 354.0 284 64.4
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 2.5e-95 352.8 285 63.9
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 3.3e-95 352.4 289 64.4
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 4.3e-95 352.1 284 63.4
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 5.6e-95 351.7 287 62.0
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 9.5e-95 350.9 285 63.2
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 1.2e-94 350.5 287 64.5
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 1.2e-94 350.5 287 64.8
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 1.2e-94 350.5 287 64.8
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 1.2e-94 350.5 287 64.8
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.2e-94 350.5 287 63.8
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.1e-94 349.7 278 66.5
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 2.8e-94 349.4 287 65.2
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 3.6e-94 349.0 287 65.2
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 4.7e-94 348.6 291 62.5
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 6.2e-94 348.2 278 65.8
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 8.0e-94 347.8 285 65.6
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.8e-93 346.7 278 65.8
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 1.8e-93 346.7 286 62.9
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 2.3e-93 346.3 286 64.0
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 3.1e-93 345.9 288 62.2
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 4.0e-93 345.5 286 64.3
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 5.2e-93 345.1 253 69.6
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 5.2e-93 345.1 285 64.6
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 6.8e-93 344.7 287 63.1
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 6.8e-93 344.7 287 63.4
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 8.9e-93 344.4 284 64.4
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 8.9e-93 344.4 284 64.4
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 8.9e-93 344.4 284 64.4
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 1.2e-92 344.0 287 63.8
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 1.2e-92 344.0 285 62.8
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.5e-92 343.6 284 60.9
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 2.0e-92 343.2 287 63.8
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 2.6e-92 342.8 287 62.4
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 4.4e-92 342.0 286 62.9
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 9.8e-92 340.9 287 62.7
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 1.3e-91 340.5 287 62.7
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 1.7e-91 340.1 230 72.6
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.7e-91 340.1 222 74.3
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 2.2e-91 339.7 287 62.7
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 6.4e-91 338.2 236 72.9
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 6.4e-91 338.2 285 62.5
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 6.4e-91 338.2 293 61.1
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 3.2e-90 335.9 291 59.8
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 5.4e-90 335.1 287 62.0
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 7.0e-90 334.7 221 71.0
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 3.5e-89 332.4 217 71.9
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 1.3e-88 330.5 221 70.6
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 2.3e-88 329.7 318 56.0
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 3.9e-88 328.9 268 62.7
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 1.6e-86 323.6 287 62.0
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 2.1e-86 323.2 285 60.0
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 2.8e-86 322.8 285 58.9
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 4.7e-86 322.0 243 67.1
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 6.2e-86 321.6 285 60.0
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 3.1e-85 319.3 290 60.0
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 6.8e-85 318.2 284 60.6
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.2e-84 317.4 262 61.8
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 1.5e-84 317.0 255 63.5
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 1.7e-83 313.5 228 68.4
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 2.1e-81 306.6 292 56.2
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 7.8e-81 304.7 284 58.8
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 1.5e-79 300.4 237 64.6
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 5.6e-79 298.5 237 64.1
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 1.2e-78 297.4 252 60.7
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 1.6e-78 297.0 289 52.9
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 6.2e-78 295.0 245 61.2
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 2.3e-77 293.1 301 51.2
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 4.1e-74 282.3 285 54.7
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 4.1e-74 282.3 246 60.6
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 2.1e-73 280.0 220 67.7
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 2.4e-69 266.5 282 52.8
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.2e-66 255.8 223 65.0
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.3e-59 234.2 197 54.3
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.2e-59 233.4 197 54.3
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.4e-58 230.7 197 53.3
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.2e-58 229.6 197 53.3
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.6e-57 225.7 225 57.3
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 7.9e-57 224.9 271 48.3
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 5.6e-55 218.8 255 50.6
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 5.6e-55 218.8 238 53.8
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.6e-52 209.9 145 67.6
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.8e-51 206.1 131 73.3
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.5e-47 193.4 197 47.2
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.2e-44 184.5 147 63.3
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.5e-44 184.1 171 57.9
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 7.4e-39 165.2 182 48.4
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 4.3e-31 139.4 119 62.2
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.1e-29 134.8 183 38.8
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.5e-28 131.0 227 42.7
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.5e-28 131.0 200 36.0
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.8e-27 126.3 234 41.0
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 3.8e-27 126.3 76 77.6
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 6.5e-27 125.6 83 72.3
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 2.5e-26 123.6 99 61.6
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 2.5e-26 123.6 99 61.6
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 7.2e-26 122.1 193 39.9
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 1.4e-18 97.8 91 50.5
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.5e-18 97.1 59 76.3
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 9.4e-18 95.1 58 74.1
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.2e-17 94.7 57 75.4
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.9e-17 92.0 58 72.4
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 9.7e-15 85.1 64 65.6
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.5e-12 76.6 46 71.7
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 7.7e-12 75.5 51 62.7
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 1.2e-07 61.6 90 40.0
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 4.8e-06 56.2 60 50.0
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 4.8e-06 56.2 60 50.0


User provided reference genes

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