Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb328020 Zea mays HOM05D007396 ORTHO05D009228 3.0e-165 585.1 299 100.0
Os02g0140800 Oryza sativa ssp. japonica HOM05D007396 ORTHO05D009228 2.3e-96 356.3 330 63.9
PSO170G5362 Papaver somniferum HOM05D007396 ORTHO05D009228 1.1e-90 337.4 306 58.5
PSO063G4472 Papaver somniferum HOM05D007396 ORTHO05D009228 1.4e-90 337.0 306 58.5
Prupe.3G025300 Prunus persica HOM05D007396 ORTHO05D009228 3.9e-88 328.9 297 56.9
Cpa.g.sc176.25 Carica papaya HOM05D007396 ORTHO05D009228 1.5e-87 327.0 298 59.4
Eucgr.E02321 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.9e-87 326.6 297 58.9
Eucgr.E02613 Eucalyptus grandis HOM05D007396 ORTHO05D009228 4.3e-87 325.5 297 58.9
AUR62001321 Chenopodium quinoa HOM05D007396 ORTHO05D009228 9.7e-87 324.3 299 58.5
Eucgr.E02270 Eucalyptus grandis HOM05D007396 ORTHO05D009228 4.8e-86 322.0 299 58.2
Eucgr.E02934 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.1e-85 320.9 297 58.2
Hund05665 Selenicereus undatus HOM05D007396 ORTHO05D009228 2.4e-85 319.7 302 56.0
Aqoxy2G02658 Aquilegia oxysepala HOM05D007396 ORTHO05D009228 4.1e-85 318.9 305 55.4
AUR62025704 Chenopodium quinoa HOM05D007396 ORTHO05D009228 4.1e-85 318.9 308 56.5
HPP92_017379 Vanilla planifolia HOM05D007396 ORTHO05D009228 5.3e-85 318.5 299 57.5
Nn8g41117 Nelumbo nucifera HOM05D007396 ORTHO05D009228 1.3e-83 313.9 319 54.2
Nitab4.5_0000642g0070 Nicotiana tabacum HOM05D007396 ORTHO05D009228 1.3e-83 313.9 305 56.7
GSVIVG01029532001 Vitis vinifera HOM05D007396 ORTHO05D009228 2.9e-83 312.8 301 57.5
FvH4_6g36570 Fragaria vesca HOM05D007396 ORTHO05D009228 5.0e-83 312.0 297 55.9
FAN14G5522 Fragaria x ananassa HOM05D000163 ORTHO05D009228 6.5e-83 311.6 297 55.6
Solyc03g113510.2 Solanum lycopersicum HOM05D007396 ORTHO05D009228 6.5e-83 311.6 302 56.0
Nitab4.5_0005451g0030 Nicotiana tabacum HOM05D007396 ORTHO05D009228 8.5e-83 311.2 305 56.4
Sopen03g032560 Solanum pennellii HOM05D007396 ORTHO05D009228 1.1e-82 310.8 305 55.1
RcHm_v2.0_Chr2g0149061 Rosa chinensis HOM05D007396 ORTHO05D009228 1.4e-82 310.5 296 55.7
EL10Ac7g18125 Beta vulgaris HOM05D007396 ORTHO05D009228 1.9e-82 310.1 308 57.8
CAN.G999.17 Capsicum annuum HOM05D007396 ORTHO05D009228 3.2e-82 309.3 305 54.8
FAN02G1321 Fragaria x ananassa HOM05D000163 ORTHO05D000219 3.6e-81 305.8 297 55.2
TWI12G0468 Tripterygium wilfordii HOM05D007396 ORTHO05D009228 3.6e-81 305.8 293 56.7
PGSC0003DMG400024566 Solanum tuberosum HOM05D007396 ORTHO05D009228 6.1e-81 305.1 302 55.3
Gorai.003G062400 Gossypium raimondii HOM05D007396 ORTHO05D009228 7.9e-81 304.7 301 54.8
Gohir.A02G117900 Gossypium hirsutum HOM05D007396 ORTHO05D009228 1.8e-80 303.5 300 55.7
FAN09G0647 Fragaria x ananassa HOM05D007396 ORTHO05D009228 3.0e-80 302.8 297 54.9
BcaB03g13031 Brassica carinata HOM05D007396 ORTHO05D009228 3.9e-80 302.4 289 57.1
CARHR017230 Cardamine hirsuta HOM05D007396 ORTHO05D009228 3.9e-80 302.4 303 54.1
Sp1g14920 Schrenkiella parvula HOM05D007396 ORTHO05D009228 3.9e-80 302.4 306 53.9
Manes.06G178800 Manihot esculenta HOM05D007396 ORTHO05D009228 8.8e-80 301.2 297 54.9
CiPaw.01G206900 Carya illinoinensis HOM05D007396 ORTHO05D009228 1.5e-79 300.4 299 56.9
Cc02_g09240 Coffea canephora HOM05D007396 ORTHO05D009228 1.5e-79 300.4 298 54.7
Gohir.D03G058600 Gossypium hirsutum HOM05D007396 ORTHO05D009228 1.5e-79 300.4 299 54.8
vmacro00415 Vaccinium macrocarpon HOM05D007396 ORTHO05D009228 1.5e-79 300.4 298 53.0
CDE06G1120 Ceratophyllum demersum HOM05D007396 ORTHO05D009228 4.4e-79 298.9 297 54.2
AL1G28940 Arabidopsis lyrata HOM05D007396 ORTHO05D009228 2.2e-78 296.6 304 54.6
Sc05g0005440 Simmondsia chinensis HOM05D007396 ORTHO05D009228 2.8e-78 296.2 294 55.8
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 4.8e-78 295.4 281 55.2
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 4.8e-78 295.4 281 55.2
Carub.0001s1651 Capsella rubella HOM05D007396 ORTHO05D009228 4.8e-78 295.4 304 54.3
Cfa003427 Carpinus fangiana HOM05D007396 ORTHO05D009228 8.2e-78 294.7 284 56.3
COL.COLO4_38280 Corchorus olitorius HOM05D007396 ORTHO05D009228 1.1e-77 294.3 297 53.5
CANSAT01G2937 Cannabis sativa HOM05D007396 ORTHO05D009228 2.4e-77 293.1 316 53.8
Ciclev10013937m.g Citrus clementina HOM05D007396 ORTHO05D009228 2.4e-77 293.1 304 54.3
SGA_v2.0_scaffold71G23969 Striga asiatica HOM05D000927 ORTHO05D009228 3.1e-77 292.7 293 54.9
DCAR_005735 Daucus carota HOM05D007396 ORTHO05D009228 4.1e-77 292.4 299 53.8
Duzib192G0415 Durio zibethinus HOM05D007396 ORTHO05D009228 4.1e-77 292.4 295 54.6
Thhalv10009697m.g Eutrema salsugineum HOM05D007396 ORTHO05D009228 4.1e-77 292.4 305 52.8
AT1G16770 Arabidopsis thaliana HOM05D007396 ORTHO05D009228 7.0e-77 291.6 300 53.3
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 7.7e-76 288.1 260 57.7
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 7.7e-76 288.1 260 56.9
ECA233G2395 Erigeron canadensis HOM05D007396 ORTHO05D009228 7.7e-76 288.1 299 54.2
Eucgr.E02947 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.1e-74 284.3 297 54.5
Lsat_1_v5_gn_4_106220 Lactuca sativa HOM05D007396 ORTHO05D009228 2.5e-74 283.1 297 52.2
PGR031G2036 Punica granatum HOM05D007396 ORTHO05D009228 2.5e-74 283.1 309 50.8
Eucgr.E02145 Eucalyptus grandis HOM05D007396 ORTHO05D009228 4.2e-74 282.3 297 53.2
Oeu045511.1 Olea europaea HOM05D007396 ORTHO05D009228 2.7e-73 279.6 298 52.3
THA.LOC104812337 Tarenaya hassleriana HOM05D007396 ORTHO05D009228 6.1e-73 278.5 300 52.7
Aa31LG7G1230 Aethionema arabicum HOM05D007396 ORTHO05D009228 8.0e-73 278.1 349 47.0
QL03p030511 Quercus lobata HOM05D007396 ORTHO05D009228 1.0e-72 277.7 258 58.9
Sed0010526 Sechium edule HOM05D007396 ORTHO05D009228 6.7e-72 275.0 300 51.3
MD17G1161100 Malus domestica HOM05D007396 ORTHO05D009228 8.2e-70 268.1 312 50.0
CsaV3_4G028760 Cucumis sativus L. HOM05D007396 ORTHO05D009228 1.4e-69 267.3 297 48.8
SEGI_29070 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 9.1e-69 264.6 251 53.4
MBI13_g34300_MAGBIO Magnolia biondii HOM05D007396 ORTHO05D009228 8.5e-67 258.1 242 54.1
ClCG07G014720 Citrullus lanatus HOM05D007396 ORTHO05D009228 4.2e-66 255.8 298 49.0
Migut.M00713 Erythranthe guttata HOM05D007396 ORTHO05D009228 2.7e-65 253.1 312 47.8
BcaC07g38814 Brassica carinata HOM05D007396 ORTHO05D009228 3.6e-65 252.7 237 55.7
Haze_16206 Corylus avellana HOM05D007396 ORTHO05D009228 3.6e-65 252.7 228 54.8
Actinidia31122 Actinidia chinensis HOM05D007396 ORTHO05D009228 4.7e-65 252.3 228 56.1
HanXRQChr06g0173121 Helianthus annuus HOM05D007396 ORTHO05D009228 7.5e-63 245.0 233 54.9
Eucgr.E02931 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.3e-62 244.2 298 48.3
Psat5g306960 Pisum sativum HOM05D007396 ORTHO05D009228 1.4e-61 240.7 258 49.2
Medtr2g105720 Medicago truncatula HOM05D007396 ORTHO05D009228 3.1e-61 239.6 232 54.7
SalBow6G2527 Salvia bowleyana HOM05D007396 ORTHO05D009228 4.5e-60 235.7 238 54.6
Eucgr.E02217 Eucalyptus grandis HOM05D007396 ORTHO05D009228 7.2e-58 228.4 207 57.0
BcaC05g25536 Brassica carinata HOM05D007396 ORTHO05D009228 1.6e-57 227.3 295 46.8
CSS0031419 Camellia sinensis var. sinensis HOM05D007396 ORTHO05D009228 3.6e-57 226.1 244 48.8
Eucgr.E02547 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.6e-57 226.1 242 53.7
Eucgr.E02284 Eucalyptus grandis HOM05D007396 ORTHO05D009228 5.7e-55 218.8 285 46.7
Eucgr.E02162 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.2e-54 216.9 295 45.8
Potri.014G003300 Populus trichocarpa HOM05D007396 ORTHO05D009228 1.4e-53 214.2 303 47.2
Eucgr.E02214 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.3e-50 203.0 297 45.5
ATR0626G334 Amborella trichopoda HOM05D007396 ORTHO05D009228 2.8e-49 199.9 192 53.6
Eucgr.E02226 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.6e-47 193.4 197 53.8
Potri.004G169900 Populus trichocarpa HOM05D007396 ORTHO05D009228 7.0e-45 185.3 298 42.6
CSS0029409 Camellia sinensis var. sinensis HOM05D007396 ORTHO05D009228 2.0e-44 183.7 195 51.3
Eucgr.J03193 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.0e-44 183.7 285 42.8
Eucgr.E02918 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.7e-44 183.3 188 54.8
CBR_g41808 Chara braunii HOM05D007396 ORTHO05D009228 3.5e-44 183.0 303 37.3
MELO3C032656.2 Cucumis melo HOM05D007396 ORTHO05D009228 5.0e-43 179.1 189 50.8
Pp3c5_8210 Physcomitrium patens HOM05D007396 ORTHO05D009228 6.6e-43 178.7 340 37.6
unitig_32.g11080 Utricularia gibba HOM05D007396 ORTHO05D009228 3.0e-35 153.3 192 45.3
Thecc.06G054000 Theobroma cacao HOM05D007396 ORTHO05D009228 1.9e-34 150.6 137 54.7
Lj7C720T3 Lonicera japonica HOM05D007396 ORTHO05D009228 7.0e-29 132.1 137 53.3
BcaC07g38815 Brassica carinata HOM05D007396 ORTHO05D009228 1.9e-21 107.5 299 31.1
Sabra14G0002100 Salix brachista HOM05D007396 ORTHO05D009228 1.2e-15 88.2 97 47.4
MELO3C010415.2 Cucumis melo HOM05D007396 ORTHO05D009228 9.9e-15 85.1 104 45.2
Mapoly0001s0056 Marchantia polymorpha HOM05D007396 ORTHO05D009228 5.4e-13 79.3 114 41.2
BcaC05g25534 Brassica carinata HOM05D000163 ORTHO05D000219 3.8e-06 56.6 87 44.8


User provided reference genes

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