Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb327210 Zea mays HOM05D006993 ORTHO05D008336 5.3e-103 377.9 214 100.0
Zm00001eb108910 Zea mays HOM05D006993 ORTHO05D008336 4.1e-79 298.5 218 79.4
Os07g0607800 Oryza sativa ssp. japonica HOM05D006993 ORTHO05D008336 1.8e-50 203.4 109 88.1
TAR626G0971 Trochodendron aralioides HOM05D006993 ORTHO05D008336 2.9e-45 186.0 157 60.5
PSO541G2665 Papaver somniferum HOM05D006993 ORTHO05D008336 1.2e-43 180.6 166 58.4
PSO675G6922 Papaver somniferum HOM05D006993 ORTHO05D008336 1.2e-43 180.6 162 56.8
GSVIVG01006115001 Vitis vinifera HOM05D006993 ORTHO05D008336 8.0e-43 177.9 158 55.7
AUR62028621 Chenopodium quinoa HOM05D006993 ORTHO05D008336 1.8e-42 176.8 156 64.7
CiPaw.13G058900 Carya illinoinensis HOM05D006993 ORTHO05D008336 4.0e-42 175.6 159 60.4
CSS0002802 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 5.2e-42 175.3 164 61.0
CANSAT11G1969 Cannabis sativa HOM05D006993 ORTHO05D008336 6.8e-42 174.9 156 57.1
Nn1g08444 Nelumbo nucifera HOM05D006993 ORTHO05D008336 6.8e-42 174.9 155 67.7
Cfa010616 Carpinus fangiana HOM05D006993 ORTHO05D008336 8.9e-42 174.5 158 60.1
QL09p044784 Quercus lobata HOM05D006993 ORTHO05D008336 8.9e-42 174.5 154 55.8
Manes.13G058300 Manihot esculenta HOM05D006993 ORTHO05D008336 1.5e-41 173.7 157 56.1
Aqoxy4G02329 Aquilegia oxysepala HOM05D006993 ORTHO05D008336 5.7e-41 171.8 155 60.6
Oeu013422.3 Olea europaea HOM05D006993 ORTHO05D008336 5.7e-41 171.8 166 53.0
Oeu049571.1 Olea europaea HOM05D006993 ORTHO05D008336 5.7e-41 171.8 181 56.9
Gohir.A11G146100 Gossypium hirsutum HOM05D006993 ORTHO05D008336 7.5e-41 171.4 164 53.7
Gorai.007G162900 Gossypium raimondii HOM05D006993 ORTHO05D008336 7.5e-41 171.4 164 53.7
Duzib138G1606 Durio zibethinus HOM05D006993 ORTHO05D008336 9.8e-41 171.0 174 52.3
CSS0020795 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.3e-40 170.6 157 56.1
CSS0028614 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.3e-40 170.6 164 61.0
AUR62008046 Chenopodium quinoa HOM05D006993 ORTHO05D008336 1.7e-40 170.2 155 63.2
DCAR_018599 Daucus carota HOM05D000190 ORTHO05D008336 1.7e-40 170.2 156 60.9
arahy.Tifrunner.gnm1.ann1.RC1IE0 Arachis hypogaea HOM05D006993 ORTHO05D008336 2.9e-40 169.5 172 58.1
Eucgr.H00675 Eucalyptus grandis HOM05D006993 ORTHO05D008336 2.9e-40 169.5 169 57.4
Cc01_g15720 Coffea canephora HOM05D006993 ORTHO05D008336 3.7e-40 169.1 110 67.3
Ciclev10016771m.g Citrus clementina HOM05D006993 ORTHO05D008336 4.9e-40 168.7 172 59.9
Lj2A1109T68 Lonicera japonica HOM05D006993 ORTHO05D008336 4.9e-40 168.7 112 67.9
Atru.chr6.3467 Acer truncatum HOM05D006993 ORTHO05D008336 6.4e-40 168.3 158 59.5
Gorai.N000700 Gossypium raimondii HOM05D006993 ORTHO05D008336 6.4e-40 168.3 156 54.5
Cpa.g.sc8.8 Carica papaya HOM05D006993 ORTHO05D008336 8.3e-40 167.9 109 68.8
MBI15_g35689_MAGBIO Magnolia biondii HOM05D006993 ORTHO05D008336 8.3e-40 167.9 112 67.0
Lj3g0006688 Lotus japonicus HOM05D006993 ORTHO05D008336 1.1e-39 167.5 173 55.5
Prupe.5G011000 Prunus persica HOM05D006993 ORTHO05D008336 1.1e-39 167.5 155 52.9
CSS0001652 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.4e-39 167.2 155 55.5
Duzib211G0651 Durio zibethinus HOM05D006993 ORTHO05D008336 1.4e-39 167.2 177 50.3
CDE03G0427 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 1.8e-39 166.8 169 50.9
Gohir.D07G168900 Gossypium hirsutum HOM05D006993 ORTHO05D008336 1.8e-39 166.8 156 54.5
EL10Ac5g10566 Beta vulgaris HOM05D006993 ORTHO05D008336 3.2e-39 166.0 155 61.9
COL.COLO4_19719 Corchorus olitorius HOM05D006993 ORTHO05D008336 3.2e-39 166.0 179 54.7
vmacro02850 Vaccinium macrocarpon HOM05D006993 ORTHO05D008336 4.1e-39 165.6 156 53.8
CDE06G2320 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 5.4e-39 165.2 158 53.8
Glyma.07G059600 Glycine max HOM05D006993 ORTHO05D008336 9.2e-39 164.5 156 62.2
ATR0751G064 Amborella trichopoda HOM05D006993 ORTHO05D008336 1.2e-38 164.1 158 50.6
Migut.D00756 Erythranthe guttata HOM05D006993 ORTHO05D008336 1.2e-38 164.1 155 52.9
Lalb_Chr17g0342261 Lupinus albus HOM05D006993 ORTHO05D008336 1.2e-38 164.1 155 54.8
Actinidia23138 Actinidia chinensis HOM05D006993 ORTHO05D008336 2.0e-38 163.3 159 51.6
MSTRG.18520 Avicennia marina HOM05D006993 ORTHO05D008336 2.0e-38 163.3 155 50.3
Thecc.01G203600 Theobroma cacao HOM05D006993 ORTHO05D008336 2.0e-38 163.3 174 49.4
TPR.G5057 Trifolium pratense HOM05D006993 ORTHO05D008336 2.0e-38 163.3 156 54.5
CsaV3_5G035360 Cucumis sativus L. HOM05D006993 ORTHO05D008336 3.5e-38 162.5 158 52.5
Medtr8g028100 Medicago truncatula HOM05D006993 ORTHO05D008336 3.5e-38 162.5 158 52.5
MD00G1144800 Malus domestica HOM05D006993 ORTHO05D008336 4.6e-38 162.2 158 54.4
MD15G1141400 Malus domestica HOM05D006993 ORTHO05D008336 4.6e-38 162.2 108 64.8
MELO3C012348.2 Cucumis melo HOM05D006993 ORTHO05D008336 7.8e-38 161.4 158 51.3
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 7.8e-38 161.4 154 63.0
Potri.014G172800 Populus trichocarpa HOM05D006993 ORTHO05D008336 1.0e-37 161.0 155 54.2
Sabra14G0132300 Salix brachista HOM05D006993 ORTHO05D008336 1.0e-37 161.0 155 56.8
Aa31sc249G30 Aethionema arabicum HOM05D006993 ORTHO05D008336 1.3e-37 160.6 155 50.3
AT2G04039 Arabidopsis thaliana HOM05D006993 ORTHO05D008336 1.3e-37 160.6 153 48.4
TWI18G0796 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 1.3e-37 160.6 158 58.9
Ca_23580_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 1.7e-37 160.2 156 62.2
Glyma.16G028500 Glycine max HOM05D006993 ORTHO05D008336 3.0e-37 159.5 156 60.9
SalBow2G0576 Salvia bowleyana HOM05D006993 ORTHO05D008336 3.0e-37 159.5 148 56.8
VMungo0331G1491 Vigna mungo HOM05D006993 ORTHO05D008336 3.0e-37 159.5 171 58.5
AL3G41710 Arabidopsis lyrata HOM05D006993 ORTHO05D008336 3.9e-37 159.1 153 49.7
A07p06910 Brassica napus HOM05D006993 ORTHO05D008336 3.9e-37 159.1 191 45.0
BraA07t28482Z Brassica rapa HOM05D006993 ORTHO05D008336 3.9e-37 159.1 191 45.0
PGR083G2302 Punica granatum HOM05D006993 ORTHO05D008336 3.9e-37 159.1 163 60.1
Sed0005772 Sechium edule HOM05D006993 ORTHO05D008336 5.0e-37 158.7 158 50.6
FvH4_5g27060 Fragaria vesca HOM05D006993 ORTHO05D008336 8.6e-37 157.9 157 50.3
FAN08G3673 Fragaria x ananassa HOM05D006993 ORTHO05D008336 8.6e-37 157.9 157 50.3
BcaC06g35821 Brassica carinata HOM05D006993 ORTHO05D008336 1.5e-36 157.1 172 47.1
BolC7t41517H Brassica oleracea HOM05D006993 ORTHO05D008336 1.5e-36 157.1 172 47.1
Sopen09g012650 Solanum pennellii HOM05D006993 ORTHO05D008336 1.5e-36 157.1 155 56.1
Solyc09g018890.3 Solanum lycopersicum HOM05D006993 ORTHO05D008336 1.9e-36 156.8 155 51.6
C07p10500 Brassica napus HOM05D006993 ORTHO05D008336 2.5e-36 156.4 172 47.1
Thhalv10002670m.g Eutrema salsugineum HOM05D006993 ORTHO05D008336 3.3e-36 156.0 153 50.3
Peaxi162Scf12724g00016 Petunia axillaris HOM05D006993 ORTHO05D008336 3.3e-36 156.0 109 65.1
PGSC0003DMG400020288 Solanum tuberosum HOM05D006993 ORTHO05D008336 1.6e-35 153.7 108 63.0
Duzib133G0497 Durio zibethinus HOM05D006993 ORTHO05D008336 2.8e-35 152.9 110 65.5
Lsat_1_v5_gn_9_15700 Lactuca sativa HOM05D006993 ORTHO05D008336 3.6e-35 152.5 184 42.4
FAN13G2105 Fragaria x ananassa HOM05D006993 ORTHO05D008336 6.2e-35 151.8 111 61.3
ECA247G3631 Erigeron canadensis HOM05D006993 ORTHO05D008336 8.0e-35 151.4 164 48.2
Sp3g23040 Schrenkiella parvula HOM05D006993 ORTHO05D008336 8.0e-35 151.4 112 59.8
SalBow6G6587 Salvia bowleyana HOM05D006993 ORTHO05D008336 1.0e-34 151.0 145 55.2
Nitab4.5_0009028g0040 Nicotiana tabacum HOM05D006993 ORTHO05D008336 1.8e-34 150.2 187 53.5
BcaB06g26751 Brassica carinata HOM05D006993 ORTHO05D008336 2.3e-34 149.8 173 52.0
CARHR101970 Cardamine hirsuta HOM05D006993 ORTHO05D008336 3.1e-34 149.4 112 56.2
FAN04G3061 Fragaria x ananassa HOM05D006993 ORTHO05D008336 4.0e-34 149.1 111 60.4
Potri.002G217400 Populus trichocarpa HOM05D006993 ORTHO05D008336 4.0e-34 149.1 162 48.8
FAN18G3928 Fragaria x ananassa HOM05D006993 ORTHO05D008336 5.2e-34 148.7 157 49.0
Phvul.010G110000 Phaseolus vulgaris HOM05D006993 ORTHO05D008336 1.2e-33 147.5 168 57.1
HanXRQChr08g0230791 Helianthus annuus HOM05D006993 ORTHO05D008336 1.5e-33 147.1 163 44.2
unitig_736.g22974 Utricularia gibba HOM05D006993 ORTHO05D008336 1.3e-32 144.1 153 47.7
CAN.G3.14 Capsicum annuum HOM05D006993 ORTHO05D008336 1.7e-32 143.7 207 46.4
RcHm_v2.0_Chr7g0218061 Rosa chinensis HOM05D006993 ORTHO05D008336 2.9e-32 142.9 159 56.0
Carub.0003s2586 Capsella rubella HOM05D006993 ORTHO05D008336 2.4e-31 139.8 105 58.1
SalBow2G2967 Salvia bowleyana HOM05D006993 ORTHO05D008336 2.4e-31 139.8 190 46.3
Gohir.A07G162350 Gossypium hirsutum HOM05D006993 ORTHO05D008336 5.4e-31 138.7 165 47.9
Ah.11g050660 Amaranthus hybridus HOM05D006993 ORTHO05D008336 4.6e-30 135.6 144 47.2
arahy.Tifrunner.gnm1.ann1.6DX8AG Arachis hypogaea HOM05D006993 ORTHO05D008336 5.6e-28 128.6 87 63.2
AagrBONN_evm.TU.Sc2ySwM_344.1609 Anthoceros agrestis HOM05D006993 ORTHO05D008336 8.1e-27 124.8 109 52.3
TWI36G0749 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 2.2e-24 116.7 112 52.7
Nitab4.5_0005967g0020 Nicotiana tabacum HOM05D006993 ORTHO05D008336 3.2e-23 112.8 156 50.6
ClCG05G021810 Citrullus lanatus HOM05D006993 ORTHO05D008336 1.6e-22 110.5 112 48.2
Pp3c2_17900 Physcomitrium patens HOM05D006993 ORTHO05D008336 1.6e-22 110.5 107 51.4
SMO111G0038 Selaginella moellendorffii HOM05D006993 ORTHO05D008336 2.7e-22 109.8 101 45.5
Mapoly0043s0057 Marchantia polymorpha HOM05D006993 ORTHO05D008336 4.6e-22 109.0 106 48.1
CBR_g51823 Chara braunii HOM05D006993 ORTHO05D008336 3.5e-14 82.8 71 50.7
Psat4g158880 Pisum sativum HOM05D006993 ORTHO05D008336 2.3e-13 80.1 106 43.4
Ca_23571_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 1.1e-12 77.8 106 56.6
Haze_03547 Corylus avellana HOM05D006993 ORTHO05D008336 3.5e-06 56.2 82 51.2


User provided reference genes

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