Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb327100 Zea mays HOM05D003960 ORTHO05D004297 2.1e-29 131.7 68 100.0
Zm00001eb068890 Zea mays HOM05D000032 ORTHO05D004297 2.5e-14 81.6 45 93.3
Zm00001eb314090 Zea mays HOM05D003960 ORTHO05D004297 4.8e-10 67.4 40 90.0
Zm00001eb100190 Zea mays HOM05D003960 ORTHO05D004297 1.8e-09 65.5 40 82.5
Os09g0440700 Oryza sativa ssp. japonica HOM05D003960 ORTHO05D004297 4.1e-09 64.3 40 85.0
Prupe.1G402400 Prunus persica HOM05D003960 ORTHO05D004297 9.1e-09 63.2 41 75.6
MD15G1048000 Malus domestica HOM05D003960 ORTHO05D004297 1.6e-08 62.4 41 70.7
PGR142G3331 Punica granatum HOM05D003960 ORTHO05D004297 1.6e-08 62.4 55 61.8
Cfa015757 Carpinus fangiana HOM05D003960 ORTHO05D004297 2.0e-08 62.0 55 60.0
Oeu018026.1 Olea europaea HOM05D003960 ORTHO05D004297 2.7e-08 61.6 55 58.2
DCAR_001242 Daucus carota HOM05D003960 ORTHO05D004297 3.5e-08 61.2 41 73.2
Lsat_1_v5_gn_7_58180 Lactuca sativa HOM05D003960 ORTHO05D004297 4.5e-08 60.8 41 70.7
MD08G1044900 Malus domestica HOM05D003960 ORTHO05D004297 4.5e-08 60.8 41 68.3
RhsimUnG0073900 Rhododendron simsii HOM05D003960 ORTHO05D004297 5.9e-08 60.5 40 77.5
HanXRQChr03g0067151 Helianthus annuus HOM05D003960 ORTHO05D004297 7.7e-08 60.1 41 70.7
MBI19_g09927_MAGBIO Magnolia biondii HOM05D003960 ORTHO05D004297 7.7e-08 60.1 36 77.8
Oeu024207.1 Olea europaea HOM05D003960 ORTHO05D004297 7.7e-08 60.1 36 77.8
HPP92_016237 Vanilla planifolia HOM05D003960 ORTHO05D004297 7.7e-08 60.1 41 73.2
Peaxi162Scf00486g00012 Petunia axillaris HOM05D003960 ORTHO05D004297 1.0e-07 59.7 41 68.3
THA.LOC104810995 Tarenaya hassleriana HOM05D003960 ORTHO05D004297 1.0e-07 59.7 45 64.4
FAN27G1345 Fragaria x ananassa HOM05D003960 ORTHO05D004297 1.3e-07 59.3 42 69.0
MD08G1045600 Malus domestica HOM05D003960 ORTHO05D004297 1.3e-07 59.3 55 54.5
Sed0008240 Sechium edule HOM05D003960 ORTHO05D004297 1.3e-07 59.3 39 76.9
TWI34G1946 Tripterygium wilfordii HOM05D003960 ORTHO05D004297 1.3e-07 59.3 41 73.2
TAR667G0002 Trochodendron aralioides HOM05D003960 ORTHO05D004297 1.3e-07 59.3 41 70.7
Atru.chr7.1831 Acer truncatum HOM05D003960 ORTHO05D004297 1.7e-07 58.9 41 65.9
Ciclev10009830m.g Citrus clementina HOM05D003960 ORTHO05D004297 1.7e-07 58.9 40 70.0
Potri.006G219200 Populus trichocarpa HOM05D003960 ORTHO05D004297 1.7e-07 58.9 36 75.0
vmacro04769 Vaccinium macrocarpon HOM05D003960 ORTHO05D004297 1.7e-07 58.9 46 65.2
CAN.G65.51 Capsicum annuum HOM05D003960 ORTHO05D004297 2.3e-07 58.5 41 68.3
Cc08_g01000 Coffea canephora HOM05D003960 ORTHO05D004297 2.3e-07 58.5 35 80.0
FvH4_2g30830 Fragaria vesca HOM05D003960 ORTHO05D004297 2.3e-07 58.5 41 70.7
FAN15G2682 Fragaria x ananassa HOM05D003960 ORTHO05D004297 2.3e-07 58.5 41 70.7
FAN20G3158 Fragaria x ananassa HOM05D003960 ORTHO05D004297 2.3e-07 58.5 41 70.7
FAN24G1040 Fragaria x ananassa HOM05D003960 ORTHO05D004297 2.3e-07 58.5 41 70.7
Lj1g0025356 Lotus japonicus HOM05D003960 ORTHO05D004297 2.3e-07 58.5 35 80.0
SGA_v2.0_scaffold169G38715 Striga asiatica HOM05D003960 ORTHO05D004297 2.3e-07 58.5 41 70.7
ClCG08G009750 Citrullus lanatus HOM05D003960 ORTHO05D004297 2.9e-07 58.2 39 69.2
HanXRQChr05g0136461 Helianthus annuus HOM05D003960 ORTHO05D004297 2.9e-07 58.2 35 77.1
Sopen02g026730 Solanum pennellii HOM05D003960 ORTHO05D004297 2.9e-07 58.2 36 72.2
TWI32G1339 Tripterygium wilfordii HOM05D003960 ORTHO05D004297 2.9e-07 58.2 41 70.7
MELO3C011494.2 Cucumis melo HOM05D003960 ORTHO05D004297 3.8e-07 57.8 39 71.8
Manes.16G086700 Manihot esculenta HOM05D003960 ORTHO05D004297 3.8e-07 57.8 36 75.0
Nitab4.5_0009849g0010 Nicotiana tabacum HOM05D003960 ORTHO05D004297 3.8e-07 57.8 41 63.4
Psat6g023040 Pisum sativum HOM05D003960 ORTHO05D004297 3.8e-07 57.8 35 77.1
Sabra06G0169100 Salix brachista HOM05D003960 ORTHO05D004297 3.8e-07 57.8 36 72.2
Solyc02g082080.1 Solanum lycopersicum HOM05D003960 ORTHO05D004297 3.8e-07 57.8 36 72.2
PGSC0003DMG400013653 Solanum tuberosum HOM05D003960 ORTHO05D004297 3.8e-07 57.8 36 72.2
CsaV3_6G031870 Cucumis sativus L. HOM05D003960 ORTHO05D004297 5.0e-07 57.4 39 69.2
Nn2g15194 Nelumbo nucifera HOM05D003960 ORTHO05D004297 5.0e-07 57.4 40 67.5
BcaC04g19455 Brassica carinata HOM05D003960 ORTHO05D004297 6.6e-07 57.0 40 67.5
C09p55580 Brassica napus HOM05D003960 ORTHO05D004297 6.6e-07 57.0 40 67.5
BolC9t58421H Brassica oleracea HOM05D003960 ORTHO05D004297 6.6e-07 57.0 40 67.5
CSS0013785 Camellia sinensis var. sinensis HOM05D003960 ORTHO05D004297 6.6e-07 57.0 36 77.8
Duzib187G1941 Durio zibethinus HOM05D003960 ORTHO05D004297 6.6e-07 57.0 36 69.4
Gorai.001G019400 Gossypium raimondii HOM05D003960 ORTHO05D004297 6.6e-07 57.0 36 72.2
Ca_13094_v3 Cicer arietinum L. HOM05D003960 ORTHO05D004297 8.6e-07 56.6 35 74.3
Gohir.D06G076200 Gossypium hirsutum HOM05D003960 ORTHO05D004297 8.6e-07 56.6 36 66.7
Gorai.010G089200 Gossypium raimondii HOM05D003960 ORTHO05D004297 8.6e-07 56.6 40 62.5
HanXRQChr13g0407981 Helianthus annuus HOM05D003960 ORTHO05D004297 8.6e-07 56.6 41 65.9
Sabra06G0110000 Salix brachista HOM05D003960 ORTHO05D004297 8.6e-07 56.6 41 63.4
SHI27998 Sapria himalayana HOM05D003960 ORTHO05D004297 8.6e-07 56.6 35 77.1
CiPaw.16G067200 Carya illinoinensis HOM05D003960 ORTHO05D004297 1.1e-06 56.2 36 72.2
Lsat_1_v5_gn_8_70441 Lactuca sativa HOM05D003960 ORTHO05D004297 1.1e-06 56.2 41 68.3
Manes.03G041100 Manihot esculenta HOM05D003960 ORTHO05D004297 1.1e-06 56.2 36 69.4
Nn8g38616 Nelumbo nucifera HOM05D003960 ORTHO05D004297 1.1e-06 56.2 39 66.7
PSO104G0019 Papaver somniferum HOM05D003960 ORTHO05D004297 1.1e-06 56.2 41 63.4
Potri.006G140700 Populus trichocarpa HOM05D003960 ORTHO05D004297 1.1e-06 56.2 41 61.0
RcHm_v2.0_Chr6g0312031 Rosa chinensis HOM05D003960 ORTHO05D004297 1.1e-06 56.2 41 65.9
GSVIVG01015065001 Vitis vinifera HOM05D003960 ORTHO05D004297 1.1e-06 56.2 41 63.4
MSTRG.25994 Avicennia marina HOM05D003960 ORTHO05D004297 1.5e-06 55.8 41 65.9
A02p06410 Brassica napus HOM05D003960 ORTHO05D004297 1.5e-06 55.8 45 60.0
BraA02t05586Z Brassica rapa HOM05D003960 ORTHO05D004297 1.5e-06 55.8 45 60.0
Dinv42402 Davidia involucrata HOM05D003960 ORTHO05D004297 1.5e-06 55.8 35 74.3
Migut.A00060 Erythranthe guttata HOM05D003960 ORTHO05D004297 1.5e-06 55.8 41 65.9
Glyma.17G219400 Glycine max HOM05D003960 ORTHO05D004297 1.5e-06 55.8 35 71.4
Gohir.A13G190100 Gossypium hirsutum HOM05D003960 ORTHO05D004297 1.5e-06 55.8 36 75.0
PSO421G0342 Papaver somniferum HOM05D003960 ORTHO05D004297 1.5e-06 55.8 41 63.4
BcaB08g36516 Brassica carinata HOM05D003960 ORTHO05D004297 1.9e-06 55.5 40 65.0
A10p19370 Brassica napus HOM05D003960 ORTHO05D004297 1.9e-06 55.5 40 65.0
BraA10t44014Z Brassica rapa HOM05D003960 ORTHO05D004297 1.9e-06 55.5 40 65.0
AUR62025257 Chenopodium quinoa HOM05D003960 ORTHO05D004297 1.9e-06 55.5 36 69.4
Ca_15825_v3 Cicer arietinum L. HOM05D003960 ORTHO05D004297 1.9e-06 55.5 36 69.4
Ca_28263_v3 Cicer arietinum L. HOM05D003960 ORTHO05D004297 1.9e-06 55.5 36 69.4
COL.COLO4_18085 Corchorus olitorius HOM05D003960 ORTHO05D004297 1.9e-06 55.5 36 66.7
Glyma.14G107100 Glycine max HOM05D003960 ORTHO05D004297 1.9e-06 55.5 35 74.3
Gohir.A06G077200 Gossypium hirsutum HOM05D003960 ORTHO05D004297 1.9e-06 55.5 40 60.0
Lj7P209T18 Lonicera japonica HOM05D003960 ORTHO05D004297 1.9e-06 55.5 41 68.3
Aqoxy7G04097 Aquilegia oxysepala HOM05D003960 ORTHO05D004297 2.5e-06 55.1 41 58.5
MSTRG.1711 Avicennia marina HOM05D003960 ORTHO05D004297 2.5e-06 55.1 41 63.4
Gohir.A07G018900 Gossypium hirsutum HOM05D003960 ORTHO05D004297 2.5e-06 55.1 36 69.4
Gohir.D07G018700 Gossypium hirsutum HOM05D003960 ORTHO05D004297 2.5e-06 55.1 36 69.4
Gorai.013G221100 Gossypium raimondii HOM05D003960 ORTHO05D004297 2.5e-06 55.1 48 62.5
Medtr1g015000 Medicago truncatula HOM05D003960 ORTHO05D004297 2.5e-06 55.1 35 71.4
PGR044G2188 Punica granatum HOM05D003960 ORTHO05D004297 2.5e-06 55.1 35 71.4
SalBow4G1627 Salvia bowleyana HOM05D003960 ORTHO05D004297 2.5e-06 55.1 41 65.9
SMO174G0135 Selaginella moellendorffii HOM05D003960 ORTHO05D004297 2.5e-06 55.1 64 51.6
SEGI_35471 Sequoiadendron giganteum HOM05D003960 ORTHO05D004297 2.5e-06 55.1 43 62.8
Atru.chr7.1719 Acer truncatum HOM05D003960 ORTHO05D004297 3.3e-06 54.7 35 68.6
Glyma.04G057000 Glycine max HOM05D003960 ORTHO05D004297 3.3e-06 54.7 35 74.3
Gohir.A13G188100 Gossypium hirsutum HOM05D003960 ORTHO05D004297 3.3e-06 54.7 36 72.2
Gohir.D13G195000 Gossypium hirsutum HOM05D003960 ORTHO05D004297 3.3e-06 54.7 36 72.2
PSO724G1087 Papaver somniferum HOM05D003960 ORTHO05D004297 3.3e-06 54.7 36 66.7
TPR.G38913 Trifolium pratense HOM05D003960 ORTHO05D004297 3.3e-06 54.7 35 68.6
BcaB05g22823 Brassica carinata HOM05D003960 ORTHO05D004297 4.2e-06 54.3 45 57.8
BcaB05g22824 Brassica carinata HOM05D003960 ORTHO05D004297 4.2e-06 54.3 45 57.8
CiPaw.15G090800 Carya illinoinensis HOM05D003960 ORTHO05D004297 4.2e-06 54.3 55 52.7
Gohir.D13G196345 Gossypium hirsutum HOM05D003960 ORTHO05D004297 4.2e-06 54.3 36 72.2
Carub.0006s1899 Capsella rubella HOM05D003960 ORTHO05D004297 5.5e-06 53.9 35 68.6
AUR62028262 Chenopodium quinoa HOM05D003960 ORTHO05D004297 5.5e-06 53.9 35 68.6
Glyma.06G057400 Glycine max HOM05D003960 ORTHO05D004297 5.5e-06 53.9 35 71.4
Hma1.2p1_0278F.1_g111800 Hydrangea macrophylla HOM05D003960 ORTHO05D004297 5.5e-06 53.9 36 80.6
Lj5g0010758 Lotus japonicus HOM05D003960 ORTHO05D004297 5.5e-06 53.9 43 62.8
PSO135G0474 Papaver somniferum HOM05D003960 ORTHO05D004297 5.5e-06 53.9 34 73.5
Sc06g0000100 Simmondsia chinensis HOM05D003960 ORTHO05D004297 5.5e-06 53.9 36 69.4
Thecc.09G075400 Theobroma cacao HOM05D003960 ORTHO05D004297 5.5e-06 53.9 36 69.4
Aa31LG1G14040 Aethionema arabicum HOM05D003960 ORTHO05D004297 7.2e-06 53.5 36 66.7
CANSAT25G0735 Cannabis sativa HOM05D003960 ORTHO05D004297 7.2e-06 53.5 44 63.6
COL.COLO4_21157 Corchorus olitorius HOM05D003960 ORTHO05D004297 7.2e-06 53.5 40 62.5
Duzib150G0920 Durio zibethinus HOM05D003960 ORTHO05D004297 7.2e-06 53.5 36 66.7
ECA236G3206 Erigeron canadensis HOM05D003960 ORTHO05D004297 7.2e-06 53.5 35 65.7
Rhsim08G0237600 Rhododendron simsii HOM05D000933 ORTHO05D000820 7.2e-06 53.5 40 70.0
Sp6g23830 Schrenkiella parvula HOM05D003960 ORTHO05D004297 7.2e-06 53.5 40 65.0
SGA_v2.0_scaffold64G21904 Striga asiatica HOM05D003960 ORTHO05D004297 7.2e-06 53.5 40 67.5
TAR624G1083 Trochodendron aralioides HOM05D003960 ORTHO05D004297 7.2e-06 53.5 35 68.6
AT5G20650 Arabidopsis thaliana HOM05D003960 ORTHO05D004297 9.5e-06 53.1 35 68.6
Duzib150G1216 Durio zibethinus HOM05D003960 ORTHO05D004297 9.5e-06 53.1 49 57.1
Thhalv10015467m.g Eutrema salsugineum HOM05D003960 ORTHO05D004297 9.5e-06 53.1 35 65.7
Phvul.009G083400 Phaseolus vulgaris HOM05D003960 ORTHO05D004297 9.5e-06 53.1 35 68.6
VMungo1309G0846 Vigna mungo HOM05D003960 ORTHO05D004297 9.5e-06 53.1 35 68.6


User provided reference genes

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