Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 6.6e-116 421.0 222 100.0
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 4.0e-81 305.4 221 73.8
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 6.9e-57 224.9 157 76.4
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 2.7e-45 186.4 205 52.7
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 7.9e-45 184.9 238 50.4
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 5.1e-44 182.2 208 51.4
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 5.1e-44 182.2 222 50.5
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 4.3e-43 179.1 236 49.6
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 1.3e-42 177.6 208 53.4
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 2.8e-42 176.4 199 52.8
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 3.7e-42 176.0 196 53.1
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 1.1e-41 174.5 200 52.5
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.8e-41 173.7 218 51.8
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 2.4e-41 173.3 217 50.2
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 2.4e-41 173.3 207 53.1
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 4.1e-41 172.6 218 52.3
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 4.1e-41 172.6 212 52.4
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 1.2e-40 171.0 203 51.7
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 1.2e-40 171.0 200 51.0
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 1.5e-40 170.6 200 51.5
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 2.6e-40 169.9 217 49.3
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 2.6e-40 169.9 222 49.5
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 4.5e-40 169.1 207 50.7
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 7.7e-40 168.3 215 47.4
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 7.7e-40 168.3 200 51.5
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.0e-39 167.9 212 50.5
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 1.0e-39 167.9 209 54.1
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 1.3e-39 167.5 218 51.4
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 2.2e-39 166.8 208 49.5
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 2.2e-39 166.8 199 51.3
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 2.2e-39 166.8 200 51.0
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 2.2e-39 166.8 232 48.3
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 2.9e-39 166.4 216 49.1
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 3.8e-39 166.0 202 53.0
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 3.8e-39 166.0 222 49.1
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 3.8e-39 166.0 229 48.0
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 5.0e-39 165.6 199 49.7
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 6.5e-39 165.2 206 49.5
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 6.5e-39 165.2 231 47.2
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 8.5e-39 164.9 213 48.8
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 8.5e-39 164.9 209 50.2
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 8.5e-39 164.9 183 54.1
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 8.5e-39 164.9 219 48.4
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 1.1e-38 164.5 205 48.8
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 1.1e-38 164.5 256 44.5
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 1.4e-38 164.1 196 50.5
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.9e-38 163.7 203 49.3
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 2.5e-38 163.3 214 48.1
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 2.5e-38 163.3 236 47.5
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.2e-38 162.9 199 49.2
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 4.2e-38 162.5 253 46.6
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 4.2e-38 162.5 223 48.4
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 5.5e-38 162.2 250 45.2
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 7.2e-38 161.8 217 47.9
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 7.2e-38 161.8 207 48.8
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 7.2e-38 161.8 203 52.2
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 7.2e-38 161.8 218 49.1
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 9.4e-38 161.4 203 49.3
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 9.4e-38 161.4 186 52.2
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 9.4e-38 161.4 204 48.0
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 1.2e-37 161.0 261 42.1
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.2e-37 161.0 238 46.6
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 1.2e-37 161.0 215 48.4
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 1.2e-37 161.0 208 50.5
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 1.2e-37 161.0 206 49.5
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 2.7e-37 159.8 215 48.4
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 3.6e-37 159.5 204 49.0
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 4.6e-37 159.1 211 48.3
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 1.0e-36 157.9 228 48.2
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 1.0e-36 157.9 193 48.2
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 1.8e-36 157.1 229 48.0
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 1.8e-36 157.1 221 48.0
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 3.0e-36 156.4 208 48.1
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 8.8e-36 154.8 241 42.7
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.1e-35 154.5 229 45.4
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 2.0e-35 153.7 236 44.1
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 2.0e-35 153.7 191 48.7
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 2.0e-35 153.7 166 50.6
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 2.5e-35 153.3 201 50.7
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 3.3e-35 152.9 243 42.4
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 3.3e-35 152.9 242 46.3
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 9.7e-35 151.4 203 51.2
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 1.7e-34 150.6 216 44.0
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 2.2e-34 150.2 266 41.0
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 2.8e-34 149.8 220 46.8
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 3.7e-34 149.4 264 40.2
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 3.7e-34 149.4 208 48.6
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 4.8e-34 149.1 242 44.6
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 4.8e-34 149.1 276 40.2
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 6.3e-34 148.7 227 46.3
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 8.2e-34 148.3 207 49.8
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 1.1e-33 147.9 222 43.2
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 2.4e-33 146.7 204 47.1
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 2.4e-33 146.7 221 43.9
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 2.4e-33 146.7 237 44.7
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 4.1e-33 146.0 264 39.0
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 5.3e-33 145.6 183 47.5
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 6.9e-33 145.2 221 45.2
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 4.5e-32 142.5 208 45.2
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 4.5e-32 142.5 230 40.9
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 5.9e-32 142.1 223 46.2
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 1.0e-31 141.4 194 51.0
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 1.3e-31 141.0 170 51.8
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 1.7e-31 140.6 306 35.0
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 5.0e-31 139.0 207 46.4
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 8.5e-31 138.3 191 42.9
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 1.1e-30 137.9 232 42.2
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 1.1e-30 137.9 232 42.2
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 2.5e-30 136.7 238 41.2
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 2.5e-30 136.7 172 47.7
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 4.2e-30 136.0 182 48.9
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 4.2e-30 136.0 192 44.3
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 7.2e-30 135.2 174 46.6
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 7.2e-30 135.2 174 46.6
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 7.2e-30 135.2 179 45.3
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 1.6e-29 134.0 226 42.5
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 2.1e-29 133.7 225 44.0
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 6.7e-28 128.6 239 40.2
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 8.8e-28 128.3 149 51.0
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 5.7e-27 125.6 154 50.6
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 9.7e-27 124.8 192 42.7
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 1.7e-26 124.0 228 40.4
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 3.7e-26 122.9 156 49.4
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.8e-25 120.6 192 43.8
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.0e-23 114.8 160 46.2
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 5.5e-22 109.0 151 45.7
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 1.0e-20 104.8 73 72.6
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 3.0e-20 103.2 174 42.5
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 3.0e-20 103.2 174 42.5
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 8.8e-20 101.7 182 41.8
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.1e-19 101.3 223 37.7
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 4.4e-19 99.4 75 66.7
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 8.2e-18 95.1 190 41.6
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.4e-17 94.4 92 59.8
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 1.8e-17 94.0 174 42.5
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 1.8e-17 94.0 138 43.5
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 9.1e-17 91.7 160 43.1
Os08g0192200 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 1.2e-16 91.3 85 62.4
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 3.5e-16 89.7 150 44.7
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 1.3e-15 87.8 162 40.1
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 1.7e-15 87.4 63 66.7
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 1.7e-15 87.4 63 66.7
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 1.7e-15 87.4 63 66.7
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 1.7e-15 87.4 63 66.7
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 2.2e-15 87.0 147 41.5
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-14 84.7 56 73.2
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-14 84.7 58 69.0
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 1.1e-14 84.7 169 37.9
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 1.9e-14 84.0 160 41.2
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 2.5e-14 83.6 59 67.8
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 3.2e-14 83.2 56 71.4
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 3.2e-14 83.2 75 58.7
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 9.4e-14 81.6 149 39.6
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 8.0e-13 78.6 135 43.0
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 2.3e-12 77.0 160 39.4
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 2.3e-12 77.0 165 38.2
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 4.4e-11 72.8 144 36.8
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 7.5e-11 72.0 54 63.0
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 7.5e-11 72.0 160 38.1
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 4.8e-10 69.3 46 69.6
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 4.8e-10 69.3 46 69.6
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 2.0e-08 63.9 74 50.0
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 5.9e-08 62.4 51 54.9
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.3e-07 61.2 84 47.6
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 1.7e-07 60.8 177 36.2
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 2.2e-07 60.5 114 40.4
CBR_g21766 Chara braunii HOM05D003513 ORTHO05D004660 2.2e-07 60.5 135 34.1
MCO09G316 Micromonas commoda HOM05D003513 ORTHO05D004660 5.0e-07 59.3 163 33.1
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 8.5e-07 58.5 35 77.1
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.5e-06 57.8 51 52.9
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 5.5e-06 55.8 34 76.5


User provided reference genes

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