Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 8.1e-32 139.8 72 100.0
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 1.3e-26 122.5 106 67.9
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 1.3e-26 122.5 67 92.5
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 2.3e-26 121.7 65 95.4
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 3.9e-26 120.9 61 100.0
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 3.9e-26 120.9 61 100.0
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 3.9e-26 120.9 61 100.0
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 6.7e-26 120.2 67 91.0
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 1.5e-25 119.0 68 91.2
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 9.6e-25 116.3 68 89.7
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 1.3e-24 115.9 67 88.1
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 3.8e-21 104.4 100 60.0
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 2.5e-20 101.7 67 76.1
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 5.7e-17 90.5 67 70.1
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 5.7e-17 90.5 68 66.2
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 3.7e-16 87.8 70 61.4
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 1.4e-15 85.9 67 59.7
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 1.4e-15 85.9 70 60.0
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 2.4e-15 85.1 71 60.6
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 2.4e-15 85.1 71 60.6
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 3.1e-15 84.7 66 63.6
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 5.3e-15 84.0 67 65.7
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 6.9e-15 83.6 62 69.4
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 6.9e-15 83.6 67 65.7
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 6.9e-15 83.6 71 59.2
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 6.9e-15 83.6 67 64.2
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 9.0e-15 83.2 71 59.2
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 1.5e-14 82.4 67 64.2
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 1.5e-14 82.4 67 64.2
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 2.0e-14 82.0 62 66.1
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 2.6e-14 81.6 62 67.7
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 2.6e-14 81.6 62 67.7
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 3.4e-14 81.3 62 64.5
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 4.5e-14 80.9 68 57.4
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 5.9e-14 80.5 68 58.8
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 5.9e-14 80.5 67 61.2
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 5.9e-14 80.5 67 64.2
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 5.9e-14 80.5 62 66.1
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 7.7e-14 80.1 62 62.9
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 7.7e-14 80.1 62 67.7
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 7.7e-14 80.1 63 63.5
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 1.0e-13 79.7 62 62.9
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.0e-13 79.7 67 61.2
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.0e-13 79.7 67 61.2
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 1.0e-13 79.7 62 69.4
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 1.3e-13 79.3 63 63.5
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 1.3e-13 79.3 63 61.9
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 1.3e-13 79.3 63 63.5
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 1.3e-13 79.3 63 60.3
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 1.7e-13 79.0 62 62.9
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 1.7e-13 79.0 67 61.2
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.7e-13 79.0 67 61.2
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 1.7e-13 79.0 62 64.5
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.7e-13 79.0 62 66.1
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 2.2e-13 78.6 66 65.2
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 2.2e-13 78.6 68 55.9
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 2.9e-13 78.2 62 64.5
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 2.9e-13 78.2 62 62.9
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 2.9e-13 78.2 62 62.9
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 2.9e-13 78.2 62 62.9
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 2.9e-13 78.2 62 62.9
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 2.9e-13 78.2 62 62.9
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 2.9e-13 78.2 62 62.9
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 2.9e-13 78.2 70 57.1
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 2.9e-13 78.2 62 62.9
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 2.9e-13 78.2 62 66.1
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 2.9e-13 78.2 69 53.6
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 2.9e-13 78.2 69 53.6
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 3.8e-13 77.8 62 64.5
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 3.8e-13 77.8 67 62.7
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 5.0e-13 77.4 62 62.9
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 5.0e-13 77.4 62 62.9
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 5.0e-13 77.4 68 57.4
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 5.0e-13 77.4 62 62.9
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 5.0e-13 77.4 68 55.9
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 5.0e-13 77.4 66 60.6
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 8.5e-13 76.6 62 66.1
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 8.5e-13 76.6 62 66.1
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 8.5e-13 76.6 70 57.1
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 1.1e-12 76.3 63 58.7
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 1.4e-12 75.9 67 56.7
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.4e-12 75.9 62 61.3
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 1.4e-12 75.9 63 58.7
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.4e-12 75.9 62 64.5
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 1.9e-12 75.5 62 62.9
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.9e-12 75.5 68 55.9
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.9e-12 75.5 68 55.9
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 3.2e-12 74.7 62 61.3
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 3.2e-12 74.7 62 64.5
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 4.2e-12 74.3 68 54.4
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 4.2e-12 74.3 69 50.7
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 5.5e-12 73.9 69 52.2
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 7.2e-12 73.6 66 57.6
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 9.4e-12 73.2 62 59.7
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 1.2e-11 72.8 63 57.1
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 1.6e-11 72.4 62 59.7
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 1.6e-11 72.4 62 59.7
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 2.1e-11 72.0 62 59.7
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 2.7e-11 71.6 63 57.1
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 2.7e-11 71.6 64 59.4
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 2.7e-11 71.6 64 59.4
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 3.6e-11 71.2 66 57.6
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 4.6e-11 70.9 62 62.9
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 6.1e-11 70.5 62 58.1
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 7.9e-11 70.1 62 61.3
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 1.0e-10 69.7 62 61.3
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 2.3e-10 68.6 62 58.1
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 3.0e-10 68.2 62 58.1
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 3.0e-10 68.2 62 56.5
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 5.1e-10 67.4 62 59.7
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 6.7e-10 67.0 62 59.7
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 6.7e-10 67.0 62 53.2
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 6.7e-10 67.0 62 59.7
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 6.7e-10 67.0 65 60.0
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 1.1e-09 66.2 62 59.7
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 2.0e-09 65.5 68 50.0
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 3.3e-09 64.7 62 56.5
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 5.7e-09 63.9 90 41.1
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 2.2e-08 62.0 62 58.1
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 2.2e-08 62.0 53 58.5
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 1.2e-06 56.2 70 41.4
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 1.2e-06 56.2 70 41.4


User provided reference genes

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