Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 1.9e-170 602.4 302 100.0
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 5.3e-125 451.4 300 77.7
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 4.6e-76 288.9 303 49.8
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 2.5e-66 256.5 307 49.5
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 9.8e-63 244.6 308 46.4
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 9.8e-63 244.6 305 45.9
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 1.3e-62 244.2 305 46.9
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 6.4e-62 241.9 309 47.2
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 1.9e-61 240.4 315 47.0
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 2.4e-61 240.0 308 47.7
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 5.4e-61 238.8 311 46.6
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 9.2e-61 238.0 307 46.6
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 3.5e-60 236.1 305 45.6
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 6.0e-60 235.3 310 47.7
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 1.7e-59 233.8 307 45.0
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 3.9e-59 232.6 304 45.7
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 8.6e-59 231.5 311 44.4
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 1.9e-58 230.3 305 46.2
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 1.9e-58 230.3 319 43.9
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 2.5e-58 229.9 321 44.9
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 5.6e-58 228.8 328 45.1
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 9.5e-58 228.0 322 43.5
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 1.2e-57 227.6 309 44.3
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 2.1e-57 226.9 312 43.6
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 2.1e-57 226.9 315 43.8
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 2.8e-57 226.5 311 45.0
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 3.6e-57 226.1 336 42.6
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 3.6e-57 226.1 304 44.4
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 6.2e-57 225.3 309 44.3
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 6.2e-57 225.3 336 42.6
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 8.1e-57 224.9 308 44.8
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 8.1e-57 224.9 311 43.7
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 1.1e-56 224.6 323 43.7
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.1e-56 224.6 304 45.1
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.1e-56 224.6 304 45.1
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 1.4e-56 224.2 314 45.5
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 3.1e-56 223.0 304 44.1
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 4.0e-56 222.6 305 46.2
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 5.2e-56 222.2 300 43.3
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 5.2e-56 222.2 317 43.8
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 1.2e-55 221.1 306 43.8
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 2.6e-55 219.9 310 43.2
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 3.4e-55 219.5 304 44.1
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 3.4e-55 219.5 314 44.3
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 3.4e-55 219.5 318 42.5
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 4.4e-55 219.2 310 44.8
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 9.9e-55 218.0 322 43.2
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.3e-54 217.6 304 43.8
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 2.2e-54 216.9 299 44.8
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 2.9e-54 216.5 305 43.0
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 2.9e-54 216.5 311 44.7
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 2.9e-54 216.5 308 45.1
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 3.7e-54 216.1 306 45.4
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 3.7e-54 216.1 305 42.3
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 4.9e-54 215.7 305 42.6
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 4.9e-54 215.7 307 43.6
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 1.4e-53 214.2 304 42.1
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 2.4e-53 213.4 304 42.8
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 4.1e-53 212.6 312 43.3
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 5.4e-53 212.2 311 44.4
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 5.4e-53 212.2 323 43.3
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 1.2e-52 211.1 308 41.2
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 2.1e-52 210.3 308 41.2
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 3.5e-52 209.5 302 44.0
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 6.0e-52 208.8 311 43.1
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 1.3e-51 207.6 309 43.7
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 2.3e-51 206.8 306 42.5
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 3.0e-51 206.5 308 41.9
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 3.9e-51 206.1 318 40.6
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 3.9e-51 206.1 316 42.7
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 5.1e-51 205.7 311 42.8
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 5.1e-51 205.7 311 43.7
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 5.1e-51 205.7 309 42.4
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 1.1e-50 204.5 308 41.2
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 5.6e-50 202.2 308 43.2
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 5.6e-50 202.2 314 44.9
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 9.6e-50 201.4 305 41.3
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 1.2e-49 201.1 311 40.5
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 4.7e-49 199.1 313 40.3
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 6.2e-49 198.7 305 41.3
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 1.1e-48 198.0 283 42.8
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 1.4e-48 197.6 308 42.5
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 1.8e-48 197.2 312 40.7
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 1.5e-47 194.1 319 40.4
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 2.0e-47 193.7 258 44.6
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 4.4e-47 192.6 301 43.5
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 1.7e-46 190.7 314 41.4
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 2.2e-46 190.3 309 41.1
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 3.8e-46 189.5 315 41.6
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 5.4e-45 185.7 296 42.2
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 2.1e-44 183.7 304 40.5
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 1.7e-43 180.6 322 41.0
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 1.7e-43 180.6 308 41.2
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 5.1e-43 179.1 246 43.5
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.5e-42 177.6 320 39.7
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 4.3e-42 176.0 311 40.5
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 4.0e-40 169.5 313 40.3
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 5.3e-40 169.1 308 40.6
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 6.9e-40 168.7 308 40.3
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 1.5e-39 167.5 308 40.3
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 3.4e-39 166.4 308 40.3
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 3.4e-39 166.4 308 40.3
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 5.8e-39 165.6 358 36.9
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 7.6e-39 165.2 266 39.5
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.7e-38 164.1 363 36.4
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 6.4e-38 162.2 341 37.5
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 1.9e-37 160.6 394 32.0
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 7.1e-37 158.7 310 38.4
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 1.0e-35 154.8 279 40.1
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 1.3e-35 154.5 309 38.8
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 4.3e-34 149.4 360 35.3
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 5.6e-34 149.1 343 36.2
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 7.4e-34 148.7 242 40.9
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 8.1e-33 145.2 292 39.0
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.2e-31 141.4 195 44.6
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 1.8e-27 127.5 159 45.9
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 8.7e-27 125.2 319 35.1
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 4.8e-25 119.4 160 44.4
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 1.4e-24 117.9 304 35.9
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 2.4e-24 117.1 108 57.4
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 4.0e-24 116.3 161 42.2
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 6.9e-24 115.5 162 43.8
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 6.9e-24 115.5 161 42.2
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 5.8e-23 112.5 222 38.3
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 3.8e-22 109.8 209 37.3
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 8.4e-22 108.6 106 53.8
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 1.9e-21 107.5 120 49.2
Os06g0721600 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D020930 9.3e-21 105.1 96 55.2
Os06g0723400 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D020930 9.3e-21 105.1 96 55.2
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 3.5e-20 103.2 286 33.6
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 1.3e-17 94.7 246 34.6
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 3.1e-16 90.1 288 31.9
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 4.1e-16 89.7 184 35.3
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 9.0e-16 88.6 288 35.1
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 9.0e-16 88.6 212 34.4
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 2.6e-15 87.0 288 34.7
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 2.6e-15 87.0 288 34.7
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 2.6e-15 87.0 151 37.7
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 1.7e-14 84.3 105 48.6
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 2.5e-13 80.5 118 41.5
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 4.2e-13 79.7 170 32.4
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 4.2e-13 79.7 158 36.1
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 9.3e-13 78.6 116 44.0
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 3.5e-12 76.6 104 46.2
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 6.1e-12 75.9 184 32.6
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 6.1e-12 75.9 76 53.9
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 1.0e-11 75.1 151 33.8
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 2.5e-10 70.5 170 35.9
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 7.4e-10 68.9 145 35.2
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 2.2e-09 67.4 236 28.4
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.2e-07 61.6 135 37.8


User provided reference genes

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