Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 2.9e-45 184.9 93 100.0
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 6.0e-35 150.6 76 100.0
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 1.9e-33 145.6 95 77.9
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 1.3e-29 132.9 75 90.7
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 4.0e-15 84.7 84 48.8
Zm00001eb135950 Zea mays HOM05D003578 ORTHO05D004021 2.0e-14 82.4 46 91.3
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 2.2e-13 79.0 77 49.4
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 5.4e-12 74.3 84 44.0
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 7.1e-12 73.9 84 39.3
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 9.3e-12 73.6 86 37.2
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.2e-11 73.2 86 41.9
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.2e-11 73.2 77 45.5
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 1.6e-11 72.8 84 39.3
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 2.1e-11 72.4 84 40.5
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 3.5e-11 71.6 84 40.5
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 4.6e-11 71.2 86 40.7
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 6.0e-11 70.9 84 39.3
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 6.0e-11 70.9 84 40.5
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 6.0e-11 70.9 77 45.5
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 7.8e-11 70.5 84 39.3
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 7.8e-11 70.5 84 40.5
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.0e-10 70.1 77 42.9
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 1.0e-10 70.1 84 40.5
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 1.0e-10 70.1 84 40.5
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 1.3e-10 69.7 84 39.3
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.7e-10 69.3 84 40.5
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.7e-10 69.3 77 44.2
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 1.7e-10 69.3 84 39.3
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 2.3e-10 68.9 84 38.1
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 2.3e-10 68.9 84 40.5
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 3.0e-10 68.6 83 41.0
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 3.0e-10 68.6 86 40.7
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 3.0e-10 68.6 77 44.2
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 3.0e-10 68.6 84 35.7
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 5.1e-10 67.8 84 39.3
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 5.1e-10 67.8 92 38.0
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 6.6e-10 67.4 89 34.8
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 6.6e-10 67.4 84 39.3
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 6.6e-10 67.4 84 39.3
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 8.7e-10 67.0 84 39.3
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 8.7e-10 67.0 79 41.8
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 8.7e-10 67.0 79 41.8
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 8.7e-10 67.0 84 35.7
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 8.7e-10 67.0 84 35.7
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.1e-09 66.6 82 45.1
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 1.1e-09 66.6 77 42.9
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 1.1e-09 66.6 77 41.6
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 1.1e-09 66.6 84 38.1
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 1.1e-09 66.6 77 41.6
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.5e-09 66.2 77 41.6
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.5e-09 66.2 84 36.9
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 1.5e-09 66.2 77 41.6
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.5e-09 66.2 84 35.7
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.5e-09 66.2 79 41.8
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 1.9e-09 65.9 77 40.3
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.9e-09 65.9 77 41.6
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.9e-09 65.9 84 38.1
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 2.5e-09 65.5 82 37.8
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 2.5e-09 65.5 82 37.8
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 3.3e-09 65.1 82 43.9
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 3.3e-09 65.1 82 43.9
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 3.3e-09 65.1 77 39.0
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.3e-09 65.1 84 38.1
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 3.3e-09 65.1 77 42.9
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 3.3e-09 65.1 84 36.9
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 4.3e-09 64.7 82 42.7
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 4.3e-09 64.7 82 37.8
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 4.3e-09 64.7 77 40.3
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 5.6e-09 64.3 77 41.6
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 9.6e-09 63.5 84 36.9
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 9.6e-09 63.5 84 38.1
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 9.6e-09 63.5 84 38.1
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 9.6e-09 63.5 82 36.6
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 9.6e-09 63.5 73 39.7
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 1.3e-08 63.2 84 35.7
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 1.6e-08 62.8 84 36.9
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.6e-08 62.8 84 36.9
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.6e-08 62.8 84 36.9
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.6e-08 62.8 84 36.9
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 2.8e-08 62.0 84 34.5
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 3.6e-08 61.6 77 39.0
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 4.8e-08 61.2 79 35.4
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.8e-08 61.2 84 38.1
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 6.2e-08 60.8 76 42.1
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 6.2e-08 60.8 84 35.7
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 6.2e-08 60.8 77 41.6
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 8.1e-08 60.5 84 34.5
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 8.1e-08 60.5 84 36.9
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 8.1e-08 60.5 84 33.3
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 8.1e-08 60.5 84 36.9
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 1.1e-07 60.1 77 37.7
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.4e-07 59.7 84 33.3
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 1.4e-07 59.7 84 33.3
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.8e-07 59.3 90 36.7
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 1.8e-07 59.3 83 33.7
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 2.4e-07 58.9 84 33.3
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 2.4e-07 58.9 84 33.3
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 3.1e-07 58.5 84 31.0
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 4.0e-07 58.2 84 33.3
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 5.3e-07 57.8 84 34.5
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 5.3e-07 57.8 84 33.3
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 5.3e-07 57.8 84 33.3
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 5.3e-07 57.8 84 33.3
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 6.9e-07 57.4 84 33.3
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 6.9e-07 57.4 76 39.5
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 6.9e-07 57.4 84 32.1
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 9.0e-07 57.0 75 38.7
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 9.0e-07 57.0 84 34.5
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 1.2e-06 56.6 84 33.3
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 1.2e-06 56.6 84 31.0
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 1.2e-06 56.6 79 35.4
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.2e-06 56.6 77 36.4
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.2e-06 56.6 77 35.1
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.2e-06 56.6 84 31.0
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 2.0e-06 55.8 77 37.7
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 2.6e-06 55.5 84 29.8
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 2.6e-06 55.5 82 40.2
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 3.4e-06 55.1 84 33.3
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 4.4e-06 54.7 74 32.4
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 5.8e-06 54.3 84 33.3
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 7.6e-06 53.9 84 28.6
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 7.6e-06 53.9 84 29.8
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 7.6e-06 53.9 84 33.3
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 9.9e-06 53.5 84 28.6
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 9.9e-06 53.5 77 36.4


User provided reference genes

Program Settings