Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 1.6e-58 229.2 116 100.0
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 2.9e-47 191.8 113 89.4
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 5.0e-47 191.0 113 89.4
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 3.3e-43 178.3 113 82.3
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 1.9e-30 136.0 82 84.1
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 1.1e-25 120.2 107 56.1
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 3.1e-25 118.6 107 55.1
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 5.3e-25 117.9 109 56.9
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 5.3e-25 117.9 109 56.9
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 5.3e-25 117.9 109 54.1
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 9.1e-25 117.1 109 56.9
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.2e-24 116.7 109 56.0
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 1.6e-24 116.3 108 50.9
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 1.6e-24 116.3 97 58.8
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 2.0e-24 115.9 108 54.6
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 2.0e-24 115.9 109 53.2
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 2.0e-24 115.9 98 59.2
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 2.6e-24 115.5 109 56.0
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 2.6e-24 115.5 109 55.0
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 3.5e-24 115.2 108 55.6
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 3.5e-24 115.2 109 56.0
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 3.5e-24 115.2 109 54.1
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 4.5e-24 114.8 98 57.1
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 4.5e-24 114.8 109 52.3
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 4.5e-24 114.8 109 56.9
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 5.9e-24 114.4 99 57.6
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 5.9e-24 114.4 109 54.1
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 7.7e-24 114.0 109 55.0
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.0e-23 113.6 99 57.6
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 1.0e-23 113.6 114 54.4
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 1.0e-23 113.6 114 54.4
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 1.3e-23 113.2 97 59.8
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 1.3e-23 113.2 97 57.7
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 1.3e-23 113.2 109 56.0
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 1.7e-23 112.8 114 54.4
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 2.2e-23 112.5 109 51.4
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 2.9e-23 112.1 109 52.3
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 2.9e-23 112.1 109 56.0
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 2.9e-23 112.1 114 54.4
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 3.8e-23 111.7 109 56.0
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 3.8e-23 111.7 108 54.6
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 5.0e-23 111.3 110 52.7
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 5.0e-23 111.3 109 55.0
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 5.0e-23 111.3 98 57.1
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 5.0e-23 111.3 109 51.4
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 6.5e-23 110.9 97 55.7
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 6.5e-23 110.9 109 51.4
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 6.5e-23 110.9 109 51.4
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 6.5e-23 110.9 98 57.1
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 8.5e-23 110.5 108 52.8
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 8.5e-23 110.5 109 54.1
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 1.1e-22 110.2 110 50.9
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 1.1e-22 110.2 97 56.7
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 1.9e-22 109.4 109 52.3
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 1.9e-22 109.4 103 55.3
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 2.5e-22 109.0 98 56.1
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 2.5e-22 109.0 109 53.2
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 2.5e-22 109.0 97 55.7
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 2.5e-22 109.0 97 57.7
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 2.5e-22 109.0 109 53.2
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 3.2e-22 108.6 109 53.2
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 3.2e-22 108.6 109 53.2
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 3.2e-22 108.6 109 52.3
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 3.2e-22 108.6 109 52.3
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 3.2e-22 108.6 110 49.1
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 3.2e-22 108.6 109 54.1
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 3.2e-22 108.6 109 54.1
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 4.2e-22 108.2 97 57.7
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 5.5e-22 107.8 98 56.1
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 5.5e-22 107.8 97 56.7
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 5.5e-22 107.8 103 52.4
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 7.2e-22 107.5 108 50.0
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 7.2e-22 107.5 109 53.2
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 7.2e-22 107.5 97 54.6
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 9.4e-22 107.1 109 51.4
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 9.4e-22 107.1 97 55.7
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 1.2e-21 106.7 109 51.4
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 1.2e-21 106.7 97 54.6
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 1.6e-21 106.3 110 51.8
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 1.6e-21 106.3 110 47.3
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 2.1e-21 105.9 96 57.3
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 2.7e-21 105.5 98 56.1
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 2.7e-21 105.5 109 51.4
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 2.7e-21 105.5 110 50.0
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 2.7e-21 105.5 97 53.6
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 3.6e-21 105.1 98 53.1
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 3.6e-21 105.1 109 50.5
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 3.6e-21 105.1 109 52.3
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 3.6e-21 105.1 109 51.4
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 4.7e-21 104.8 97 52.6
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 4.7e-21 104.8 109 49.5
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 6.1e-21 104.4 97 55.7
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 1.8e-20 102.8 109 51.4
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 1.8e-20 102.8 111 50.5
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 3.0e-20 102.1 110 50.0
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 4.0e-20 101.7 109 49.5
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 6.8e-20 100.9 109 48.6
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 6.8e-20 100.9 109 47.7
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 8.8e-20 100.5 97 53.6
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 8.8e-20 100.5 97 53.6
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 8.8e-20 100.5 109 49.5
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 2.0e-19 99.4 109 47.7
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 2.6e-19 99.0 124 48.4
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 3.4e-19 98.6 96 49.0
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.3e-18 96.7 98 52.0
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 8.3e-18 94.0 119 46.2
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 8.3e-18 94.0 86 54.7
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 4.5e-16 88.2 83 55.4
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 2.5e-14 82.4 109 37.6
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 1.2e-13 80.1 94 53.2
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 6.8e-12 74.3 60 61.7
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 3.4e-11 72.0 60 55.0
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 7.5e-11 70.9 91 41.8
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 9.8e-11 70.5 137 34.3
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 8.6e-07 57.4 54 50.0
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 5.5e-06 54.7 97 38.1


User provided reference genes

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