Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 2.0e-305 1051.6 527 100.0
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 4.9e-235 817.8 529 77.3
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 5.5e-194 681.4 480 68.1
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 5.3e-189 664.8 508 64.0
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 2.0e-188 662.9 473 64.7
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 1.0e-187 660.6 471 66.7
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 1.0e-187 660.6 472 66.9
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 2.2e-187 659.4 498 64.3
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 3.8e-187 658.7 473 66.6
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 6.5e-187 657.9 470 65.1
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 1.4e-186 656.8 475 65.3
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 2.5e-186 656.0 472 66.5
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 1.2e-185 653.7 474 64.8
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 1.2e-185 653.7 512 62.5
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 1.6e-185 653.3 514 61.3
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 2.7e-185 652.5 517 59.0
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 2.7e-185 652.5 474 63.1
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 4.7e-185 651.7 472 65.3
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 6.1e-185 651.4 474 64.8
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 8.0e-185 651.0 473 65.3
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 1.4e-184 650.2 472 65.3
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 1.8e-184 649.8 474 65.0
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 1.8e-184 649.8 472 65.0
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 1.8e-184 649.8 471 65.2
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 2.3e-184 649.4 473 64.1
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 5.2e-184 648.3 472 65.3
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 6.7e-184 647.9 473 63.6
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 8.8e-184 647.5 481 64.0
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 1.1e-183 647.1 512 60.7
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 1.1e-183 647.1 473 63.8
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.5e-183 646.7 474 64.8
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 1.5e-183 646.7 475 63.6
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 1.5e-183 646.7 474 64.1
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 1.5e-183 646.7 482 63.9
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 2.6e-183 646.0 494 61.5
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.6e-183 646.0 494 61.7
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 2.6e-183 646.0 476 64.3
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 3.3e-183 645.6 473 62.8
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 5.7e-183 644.8 478 61.1
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 7.4e-183 644.4 477 62.5
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 9.7e-183 644.0 474 64.8
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 1.3e-182 643.7 474 65.0
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 1.7e-182 643.3 473 64.9
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 2.2e-182 642.9 468 63.5
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 2.8e-182 642.5 474 64.3
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 2.8e-182 642.5 476 64.3
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 2.8e-182 642.5 474 65.0
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 3.7e-182 642.1 483 61.5
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 3.7e-182 642.1 494 61.5
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 3.7e-182 642.1 480 62.3
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 6.3e-182 641.3 472 64.6
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 8.2e-182 641.0 464 65.7
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 1.4e-181 640.2 476 63.7
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 3.1e-181 639.0 472 62.7
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 3.1e-181 639.0 477 62.9
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 5.3e-181 638.3 482 61.4
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 5.3e-181 638.3 493 62.5
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 9.1e-181 637.5 483 61.7
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 9.1e-181 637.5 477 63.3
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.6e-180 636.7 477 62.7
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.6e-180 636.7 472 63.8
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 2.0e-180 636.3 473 63.6
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 5.9e-180 634.8 502 60.2
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 1.7e-179 633.3 473 63.2
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 2.2e-179 632.9 477 62.9
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 2.9e-179 632.5 516 58.7
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 6.5e-179 631.3 475 62.5
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 6.5e-179 631.3 473 64.3
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 8.5e-179 630.9 506 59.5
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 8.5e-179 630.9 473 63.0
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 8.5e-179 630.9 472 63.6
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 1.9e-178 629.8 473 62.6
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 1.9e-178 629.8 474 63.5
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 4.2e-178 628.6 510 59.8
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 4.2e-178 628.6 510 59.8
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 4.2e-178 628.6 510 59.8
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 7.2e-178 627.9 502 60.0
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 9.4e-178 627.5 477 62.3
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 3.6e-177 625.5 482 61.2
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 4.7e-177 625.2 479 61.4
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 8.0e-177 624.4 482 61.2
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 1.2e-175 620.5 440 66.1
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 1.5e-175 620.2 478 63.0
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 2.0e-175 619.8 476 61.8
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 2.2e-174 616.3 474 61.8
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 2.8e-174 615.9 508 59.4
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 7.0e-173 611.3 496 59.7
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 1.2e-172 610.5 479 60.8
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 3.5e-172 609.0 466 61.4
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 2.9e-171 605.9 476 62.6
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 3.8e-171 605.5 440 64.5
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 1.1e-170 604.0 443 63.7
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 8.0e-169 597.8 440 63.9
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 1.0e-168 597.4 474 61.4
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.8e-168 596.7 476 60.5
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 2.8e-166 589.3 470 60.9
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 1.4e-165 587.0 449 61.7
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 1.4e-165 587.0 470 59.1
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 3.1e-165 585.9 470 59.1
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 3.1e-165 585.9 442 62.2
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 4.1e-165 585.5 472 60.2
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 2.8e-161 572.8 455 60.4
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 1.5e-159 567.0 501 57.3
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 2.6e-159 566.2 468 58.5
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 3.9e-155 552.4 470 57.2
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 5.0e-155 552.0 414 62.3
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.8e-152 543.5 472 57.4
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 2.3e-152 543.1 494 53.8
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 3.1e-152 542.7 384 66.1
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 9.5e-146 521.2 472 56.4
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 1.6e-145 520.4 473 53.9
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 6.2e-145 518.5 388 61.3
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 9.2e-141 504.6 454 54.0
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 6.6e-139 498.4 442 55.0
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 6.8e-136 488.4 471 51.6
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 2.4e-133 479.9 470 50.9
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.6e-127 459.9 324 67.0
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 8.7e-123 444.9 347 61.1
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 9.9e-119 431.4 338 59.5
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 3.8e-118 429.5 483 45.8
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 2.4e-117 426.8 318 62.6
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 9.9e-111 404.8 295 65.1
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 9.9e-111 404.8 295 64.7
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 1.8e-104 384.0 380 52.1
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 2.2e-102 377.1 278 64.7
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 2.2e-94 350.5 534 40.3
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 3.7e-89 333.2 602 34.6
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 8.2e-89 332.0 250 63.6
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 2.3e-83 313.9 464 41.8
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 4.2e-77 293.1 456 40.4
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 5.5e-53 213.0 157 62.4
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 5.4e-48 196.4 240 45.4
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 3.5e-47 193.7 212 47.6
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.3e-35 154.5 108 70.4
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 3.9e-30 137.1 309 31.1
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 2.5e-29 134.4 150 50.0
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 8.9e-27 125.9 243 34.2
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 2.0e-26 124.8 117 52.1
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 3.4e-26 124.0 87 62.1
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 1.6e-23 115.2 90 61.1
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 1.1e-16 92.4 68 64.7
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 4.1e-16 90.5 63 63.5
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 4.6e-15 87.0 68 58.8
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 2.4e-11 74.7 89 44.9


User provided reference genes

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