Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb318510 Zea mays HOM05D005101 ORTHO05D001271 5.9e-135 484.2 241 100.0
Zm00001eb230360 Zea mays HOM05D005101 ORTHO05D001271 2.9e-105 385.6 230 86.1
Zm00001eb102050 Zea mays HOM05D005101 ORTHO05D001271 1.2e-79 300.4 165 94.5
Zm00001eb316990 Zea mays HOM05D005101 ORTHO05D001271 7.1e-56 221.5 152 77.6
Zm00001eb095610 Zea mays HOM05D005101 ORTHO05D001271 1.3e-38 164.1 92 95.7
MBI04_g11526_MAGBIO Magnolia biondii HOM05D005101 ORTHO05D001271 1.1e-16 91.3 131 35.9
TAR376G0758 Trochodendron aralioides HOM05D005101 ORTHO05D001271 1.1e-16 91.3 124 37.9
TAR628G1111 Trochodendron aralioides HOM05D005101 ORTHO05D001271 1.9e-16 90.5 137 35.0
MD06G1001600 Malus domestica HOM05D005101 ORTHO05D001271 2.5e-16 90.1 124 37.9
Prupe.5G002400 Prunus persica HOM05D005101 ORTHO05D001271 9.4e-16 88.2 124 37.1
GSVIVG01013451001 Vitis vinifera HOM05D005101 ORTHO05D001271 2.1e-15 87.0 136 37.5
Nn5g31073 Nelumbo nucifera HOM05D005101 ORTHO05D001271 8.0e-15 85.1 131 36.6
TAR381G0675 Trochodendron aralioides HOM05D005101 ORTHO05D001271 8.0e-15 85.1 124 36.3
Thecc.07G035700 Theobroma cacao HOM05D005101 ORTHO05D001271 1.0e-14 84.7 124 36.3
TWI56G0322 Tripterygium wilfordii HOM05D005101 ORTHO05D001271 1.8e-14 84.0 166 34.3
PSO675G4128 Papaver somniferum HOM05D005101 ORTHO05D001271 2.3e-14 83.6 124 35.5
TWI36G1399 Tripterygium wilfordii HOM05D005101 ORTHO05D001271 3.0e-14 83.2 166 34.3
Oeu064738.2 Olea europaea HOM05D005101 ORTHO05D001271 5.2e-14 82.4 160 32.5
CiPaw.07G130900 Carya illinoinensis HOM05D005101 ORTHO05D001271 6.7e-14 82.0 146 34.2
THA.LOC104812021 Tarenaya hassleriana HOM05D005101 ORTHO05D001271 6.7e-14 82.0 134 36.6
Ciclev10000062m.g Citrus clementina HOM05D005101 ORTHO05D001271 8.8e-14 81.6 134 37.3
RcHm_v2.0_Chr7g0217401 Rosa chinensis HOM05D005101 ORTHO05D001271 1.2e-13 81.3 136 34.6
Dinv23351 Davidia involucrata HOM05D005101 ORTHO05D001271 2.0e-13 80.5 138 35.5
Oeu059862.1 Olea europaea HOM05D005101 ORTHO05D001271 2.6e-13 80.1 124 37.1
PSO541G3235 Papaver somniferum HOM05D005101 ORTHO05D001271 2.6e-13 80.1 124 33.9
Peaxi162Scf00205g01431 Petunia axillaris HOM05D005101 ORTHO05D001271 2.6e-13 80.1 124 33.9
Atru.chr13.27 Acer truncatum HOM05D005101 ORTHO05D001271 3.3e-13 79.7 123 39.0
CiPaw.08G078400 Carya illinoinensis HOM05D005101 ORTHO05D001271 3.3e-13 79.7 164 32.3
PGR031G3180 Punica granatum HOM05D005101 ORTHO05D001271 3.3e-13 79.7 160 33.1
MELO3C017068.2 Cucumis melo HOM05D005101 ORTHO05D001271 4.4e-13 79.3 181 33.1
CsaV3_4G037750 Cucumis sativus L. HOM05D005101 ORTHO05D001271 4.4e-13 79.3 124 39.5
CDE10G1108 Ceratophyllum demersum HOM05D041590 ORTHO05D043859 5.7e-13 79.0 123 31.7
ATR0605G356 Amborella trichopoda HOM05D005101 ORTHO05D001271 7.5e-13 78.6 157 35.7
Duzib268G0010 Durio zibethinus HOM05D005101 ORTHO05D001271 7.5e-13 78.6 124 34.7
Nitab4.5_0002112g0140 Nicotiana tabacum HOM05D005101 ORTHO05D001271 7.5e-13 78.6 124 33.1
BcaB07g32090 Brassica carinata HOM05D005101 ORTHO05D001271 9.7e-13 78.2 124 34.7
Sed0027880 Sechium edule HOM05D005101 ORTHO05D001271 9.7e-13 78.2 124 37.9
Sopen05g004540 Solanum pennellii HOM05D005101 ORTHO05D001271 9.7e-13 78.2 124 33.1
BcaC05g26005 Brassica carinata HOM05D005101 ORTHO05D001271 1.7e-12 77.4 138 33.3
A06p17010 Brassica napus HOM05D005101 ORTHO05D001271 1.7e-12 77.4 138 33.3
C05p19640 Brassica napus HOM05D005101 ORTHO05D001271 1.7e-12 77.4 138 33.3
BolC5t30665H Brassica oleracea HOM05D005101 ORTHO05D001271 1.7e-12 77.4 138 33.3
BraA06t24808Z Brassica rapa HOM05D005101 ORTHO05D001271 1.7e-12 77.4 138 33.3
Carub.0001s2044 Capsella rubella HOM05D005101 ORTHO05D001271 1.7e-12 77.4 144 32.6
CAN.G610.9 Capsicum annuum HOM05D005101 ORTHO05D001271 1.7e-12 77.4 124 32.3
QL02p016087 Quercus lobata HOM05D005101 ORTHO05D001271 1.7e-12 77.4 137 33.6
THA.LOC104813728 Tarenaya hassleriana HOM05D005101 ORTHO05D001271 1.7e-12 77.4 124 35.5
FAN13G2092 Fragaria x ananassa HOM05D005101 ORTHO05D001271 2.2e-12 77.0 124 35.5
Nitab4.5_0000694g0200 Nicotiana tabacum HOM05D005101 ORTHO05D001271 2.2e-12 77.0 124 33.1
Sp1g18670 Schrenkiella parvula HOM05D005101 ORTHO05D001271 2.2e-12 77.0 124 34.7
Actinidia37901 Actinidia chinensis HOM05D005101 ORTHO05D001271 2.8e-12 76.6 120 37.5
Cpa.g.sc36.107 Carica papaya HOM05D005101 ORTHO05D001271 2.8e-12 76.6 138 32.6
FvH4_5g26490 Fragaria vesca HOM05D005101 ORTHO05D001271 2.8e-12 76.6 124 35.5
FAN18G2527 Fragaria x ananassa HOM05D005101 ORTHO05D001271 2.8e-12 76.6 124 35.5
FAN04G0351 Fragaria x ananassa HOM05D005101 ORTHO05D001271 3.7e-12 76.3 124 35.5
FAN08G1478 Fragaria x ananassa HOM05D005101 ORTHO05D001271 3.7e-12 76.3 124 35.5
TPR.G22374 Trifolium pratense HOM05D005101 ORTHO05D001271 3.7e-12 76.3 125 34.4
Lj4C813T13 Lonicera japonica HOM05D005101 ORTHO05D001271 6.3e-12 75.5 124 34.7
Psat6g132160 Pisum sativum HOM05D005101 ORTHO05D001271 6.3e-12 75.5 125 35.2
MSTRG.24898 Avicennia marina HOM05D005101 ORTHO05D001271 8.2e-12 75.1 124 35.5
Lj2g0011718 Lotus japonicus HOM05D005101 ORTHO05D001271 8.2e-12 75.1 125 33.6
AT1G20970 Arabidopsis thaliana HOM05D005101 ORTHO05D001271 1.4e-11 74.3 124 32.3
Cc10_g00130 Coffea canephora HOM05D005101 ORTHO05D001271 1.4e-11 74.3 124 34.7
AL1G34040 Arabidopsis lyrata HOM05D005101 ORTHO05D001271 1.8e-11 73.9 130 31.5
Thhalv10006715m.g Eutrema salsugineum HOM05D005101 ORTHO05D001271 1.8e-11 73.9 124 34.7
Sc22g0001420 Simmondsia chinensis HOM05D005101 ORTHO05D001271 1.8e-11 73.9 124 35.5
Potri.006G191500 Populus trichocarpa HOM05D005101 ORTHO05D001271 4.1e-11 72.8 171 31.0
Sabra06G0146700 Salix brachista HOM05D005101 ORTHO05D001271 4.1e-11 72.8 152 32.9
CANSAT64G2160 Cannabis sativa HOM05D005101 ORTHO05D001271 5.3e-11 72.4 138 32.6
Lalb_Chr04g0258871 Lupinus albus HOM05D005101 ORTHO05D001271 5.3e-11 72.4 148 30.4
Lalb_Chr10g0095281 Lupinus albus HOM05D005101 ORTHO05D001271 5.3e-11 72.4 125 32.8
Sc07g0008820 Simmondsia chinensis HOM05D005101 ORTHO05D001271 7.0e-11 72.0 124 33.1
CARHR021430 Cardamine hirsuta HOM05D005101 ORTHO05D001271 9.1e-11 71.6 124 33.9
Glyma.20G006500 Glycine max HOM05D005101 ORTHO05D001271 9.1e-11 71.6 151 32.5
HanXRQChr07g0204251 Helianthus annuus HOM05D005101 ORTHO05D001271 9.1e-11 71.6 124 34.7
Rhsim07G0258200 Rhododendron simsii HOM05D005101 ORTHO05D001271 1.2e-10 71.2 123 37.4
Aqoxy6G03044 Aquilegia oxysepala HOM05D005101 ORTHO05D001271 1.6e-10 70.9 124 30.6
EL10Ac5g12200 Beta vulgaris HOM05D005101 ORTHO05D001271 1.6e-10 70.9 123 34.1
Hma1.2p1_0914F.1_g236180 Hydrangea macrophylla HOM05D005101 ORTHO05D001271 1.6e-10 70.9 137 31.4
Lsat_1_v5_gn_8_25240 Lactuca sativa HOM05D005101 ORTHO05D001271 1.6e-10 70.9 124 33.1
Aqoxy5G00948 Aquilegia oxysepala HOM05D000015 ORTHO05D003512 2.0e-10 70.5 119 34.5
SalBow7G2128 Salvia bowleyana HOM05D005101 ORTHO05D001271 2.0e-10 70.5 124 33.9
Hund14431 Selenicereus undatus HOM05D005101 ORTHO05D001271 2.0e-10 70.5 141 30.5
vmacro04431 Vaccinium macrocarpon HOM05D005101 ORTHO05D001271 2.0e-10 70.5 124 38.7
ECA233G5568 Erigeron canadensis HOM05D005101 ORTHO05D001271 2.7e-10 70.1 125 35.2
Migut.C00341 Erythranthe guttata HOM05D005101 ORTHO05D001271 2.7e-10 70.1 124 32.3
Migut.C00640 Erythranthe guttata HOM05D005101 ORTHO05D001271 2.7e-10 70.1 124 32.3
Gohir.A01G080000 Gossypium hirsutum HOM05D005101 ORTHO05D001271 3.5e-10 69.7 124 32.3
Gorai.002G089100 Gossypium raimondii HOM05D005101 ORTHO05D001271 3.5e-10 69.7 124 32.3
HanXRQChr08g0216541 Helianthus annuus HOM05D005101 ORTHO05D001271 4.5e-10 69.3 139 28.1
Oeu030369.3 Olea europaea HOM05D005101 ORTHO05D001271 5.9e-10 68.9 136 32.4
SGA_v2.0_scaffold26G11270 Striga asiatica HOM05D005101 ORTHO05D001271 5.9e-10 68.9 124 33.1
Glyma.07G159600 Glycine max HOM05D005101 ORTHO05D001271 1.0e-09 68.2 151 31.1
Gohir.D01G067200 Gossypium hirsutum HOM05D005101 ORTHO05D001271 1.0e-09 68.2 124 31.5
AUR62007227 Chenopodium quinoa HOM05D005101 ORTHO05D001271 1.3e-09 67.8 160 28.1
unitig_32.g11138 Utricularia gibba HOM05D005101 ORTHO05D001271 1.3e-09 67.8 124 33.9
Actinidia33602 Actinidia chinensis HOM05D005101 ORTHO05D001271 3.8e-09 66.2 101 39.6
Lalb_Chr17g0338131 Lupinus albus HOM05D005101 ORTHO05D001271 5.0e-09 65.9 125 32.8
CSS0024940 Camellia sinensis var. sinensis HOM05D005101 ORTHO05D001271 6.5e-09 65.5 124 33.9
arahy.Tifrunner.gnm1.ann1.DXQU4L Arachis hypogaea HOM05D005101 ORTHO05D001271 8.5e-09 65.1 120 31.7
Aa31LG7G5150 Aethionema arabicum HOM05D005101 ORTHO05D001271 1.5e-08 64.3 138 28.3
arahy.Tifrunner.gnm1.ann1.CZE161 Arachis hypogaea HOM05D005101 ORTHO05D001271 1.5e-08 64.3 119 31.9
AUR62018772 Chenopodium quinoa HOM05D005101 ORTHO05D001271 1.9e-08 63.9 123 29.3
Phvul.003G008900 Phaseolus vulgaris HOM05D005101 ORTHO05D001271 3.2e-08 63.2 125 32.8
unitig_8.g4908 Utricularia gibba HOM05D005101 ORTHO05D001271 3.2e-08 63.2 124 35.5
Haze_22881 Corylus avellana HOM05D005101 ORTHO05D001271 9.4e-08 61.6 110 30.9
Cfa014159 Carpinus fangiana HOM05D005101 ORTHO05D001271 1.2e-07 61.2 119 27.7
HPP92_015728 Vanilla planifolia HOM05D005101 ORTHO05D001271 1.6e-07 60.8 131 30.5
Gohir.A04G015650 Gossypium hirsutum HOM05D005101 ORTHO05D001271 2.7e-07 60.1 124 32.3
VMungo1215G2445 Vigna mungo HOM05D005101 ORTHO05D001271 4.7e-07 59.3 121 32.2
Ah.07g200000 Amaranthus hybridus HOM05D005101 ORTHO05D001271 6.1e-07 58.9 123 30.1
Ah.12g053660 Amaranthus hybridus HOM05D005101 ORTHO05D001271 1.0e-06 58.2 159 28.3
Gorai.009G438800 Gossypium raimondii HOM05D005101 ORTHO05D001271 1.4e-06 57.8 124 31.5
Gohir.D05G370650 Gossypium hirsutum HOM05D005101 ORTHO05D001271 3.0e-06 56.6 124 30.6
Gorai.009G439100 Gossypium raimondii HOM05D005101 ORTHO05D001271 3.0e-06 56.6 124 30.6
Ca_25723_v3 Cicer arietinum L. HOM05D005101 ORTHO05D001271 4.0e-06 56.2 84 38.1
Medtr1g035040 Medicago truncatula HOM05D005101 ORTHO05D001271 8.8e-06 55.1 125 30.4
Oeu051068.1 Olea europaea HOM05D002105 ORTHO05D001271 8.8e-06 55.1 167 26.9


User provided reference genes

Program Settings