Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb317370 Zea mays HOM05D019859 ORTHO05D008940 3.0e-237 824.7 395 100.0
Zm00001eb136730 Zea mays HOM05D019859 ORTHO05D008940 2.6e-164 582.4 281 99.6
Zm00001eb434100 Zea mays HOM05D019859 ORTHO05D008940 6.0e-153 544.7 299 89.3
Zm00001eb442140 Zea mays HOM05D019859 ORTHO05D008940 1.7e-131 473.4 229 99.6
Os11g0247500 Oryza sativa ssp. japonica HOM05D019859 ORTHO05D008940 9.7e-103 377.9 310 65.8
Zm00001eb065700 Zea mays HOM05D019859 ORTHO05D008940 1.9e-42 177.6 128 76.6
HPP92_007592 Vanilla planifolia HOM05D007315 ORTHO05D008940 8.7e-19 99.0 280 30.4
MBI07_g42068_MAGBIO Magnolia biondii HOM05D007315 ORTHO05D008940 4.5e-15 86.7 242 31.0
Nn1g09432 Nelumbo nucifera HOM05D007315 ORTHO05D008940 4.2e-13 80.1 297 28.3
Atru.chr3.1974 Acer truncatum HOM05D007315 ORTHO05D008940 2.0e-10 71.2 164 34.1
Potri.017G002200 Populus trichocarpa HOM05D007315 ORTHO05D008940 2.0e-10 71.2 316 26.3
TAR362G0103 Trochodendron aralioides HOM05D007315 ORTHO05D008940 2.5e-10 70.9 107 37.4
Sabra07G0115600 Salix brachista HOM05D007315 ORTHO05D008940 3.3e-10 70.5 107 36.4
Potri.007G145400 Populus trichocarpa HOM05D007315 ORTHO05D008940 1.7e-09 68.2 106 35.8
Duzib128G0490 Durio zibethinus HOM05D007315 ORTHO05D008940 2.2e-09 67.8 123 35.0
GSVIVG01038254001 Vitis vinifera HOM05D007315 ORTHO05D008940 2.2e-09 67.8 107 37.4
Manes.05G207100 Manihot esculenta HOM05D007315 ORTHO05D008940 4.8e-09 66.6 107 36.4
TWI15G1252 Tripterygium wilfordii HOM05D007315 ORTHO05D008940 4.8e-09 66.6 136 31.6
CDE07G0865 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 8.2e-09 65.9 196 31.1
Ciclev10019166m.g Citrus clementina HOM05D007315 ORTHO05D008940 1.1e-08 65.5 106 34.0
Thecc.05G001400 Theobroma cacao HOM05D007315 ORTHO05D008940 1.8e-08 64.7 139 33.1
Rhsim09G0003400 Rhododendron simsii HOM05D007315 ORTHO05D008940 2.4e-08 64.3 110 34.5
Sabra17G0006200 Salix brachista HOM05D007315 ORTHO05D008940 3.1e-08 63.9 199 25.6
COL.COLO4_20289 Corchorus olitorius HOM05D007315 ORTHO05D008940 5.3e-08 63.2 100 37.0
AUR62023706 Chenopodium quinoa HOM05D007315 ORTHO05D008940 6.9e-08 62.8 161 31.1
Dinv33248 Davidia involucrata HOM05D007315 ORTHO05D008940 1.2e-07 62.0 247 25.5
AUR62002486 Chenopodium quinoa HOM05D007315 ORTHO05D008940 1.5e-07 61.6 161 31.1
Ah.13g073150 Amaranthus hybridus HOM05D007315 ORTHO05D008940 2.0e-07 61.2 256 28.9
Aqoxy5G03722 Aquilegia oxysepala HOM05D007315 ORTHO05D008940 2.6e-07 60.8 99 35.4
DCAR_027494 Daucus carota HOM05D007315 ORTHO05D008940 3.4e-07 60.5 107 33.6
QL10p064604 Quercus lobata HOM05D007315 ORTHO05D008940 3.4e-07 60.5 107 33.6
EL10Ac3g06171 Beta vulgaris HOM05D007315 ORTHO05D008940 4.5e-07 60.1 139 34.5
Gohir.A10G003901 Gossypium hirsutum HOM05D007315 ORTHO05D008940 4.5e-07 60.1 104 34.6
PSO732G0261 Papaver somniferum HOM05D007315 ORTHO05D008940 4.5e-07 60.1 131 31.3
COL.COLO4_23477 Corchorus olitorius HOM05D007315 ORTHO05D008940 5.9e-07 59.7 100 34.0
QL10p065726 Quercus lobata HOM05D007315 ORTHO05D008940 5.9e-07 59.7 107 33.6
Gohir.D10G003900 Gossypium hirsutum HOM05D007315 ORTHO05D008940 7.7e-07 59.3 104 34.6
Gorai.011G004300 Gossypium raimondii HOM05D007315 ORTHO05D008940 7.7e-07 59.3 104 34.6
Cpa.g.sc151.10 Carica papaya HOM05D007315 ORTHO05D008940 3.8e-06 57.0 99 32.3
Lj5g0028022 Lotus japonicus HOM05D007315 ORTHO05D008940 5.0e-06 56.6 247 24.3
CDE04G0399 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 6.5e-06 56.2 228 28.5
ClCG06G009750 Citrullus lanatus HOM05D007315 ORTHO05D008940 6.5e-06 56.2 73 37.0
Haze_11126 Corylus avellana HOM05D007315 ORTHO05D008940 6.5e-06 56.2 107 30.8


User provided reference genes

Program Settings