Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb317360 Zea mays HOM05D000558 ORTHO05D003075 2.9e-46 188.3 103 100.0
Zm00001eb005410 Zea mays HOM05D000558 ORTHO05D003075 3.0e-43 178.3 103 96.1
Zm00001eb167790 Zea mays HOM05D000558 ORTHO05D003075 2.4e-37 158.7 102 87.3
Zm00001eb253300 Zea mays HOM05D000558 ORTHO05D003075 5.1e-27 124.4 100 75.0
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 6.8e-24 114.0 68 89.7
Zm00001eb349840 Zea mays HOM05D000558 ORTHO05D003075 6.4e-22 107.5 102 64.7
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 7.8e-20 100.5 65 83.1
Os01g0182200 Oryza sativa ssp. japonica HOM05D000558 ORTHO05D003075 5.8e-15 84.3 101 59.4
PSO170G1677 Papaver somniferum HOM05D000558 ORTHO05D003075 7.1e-13 77.4 97 47.4
Glyma.19G108400 Glycine max HOM05D000558 ORTHO05D003075 3.5e-12 75.1 104 44.2
PSO357G0258 Papaver somniferum HOM05D000558 ORTHO05D003075 3.5e-12 75.1 97 46.4
Glyma.16G043800 Glycine max HOM05D000558 ORTHO05D003075 4.6e-12 74.7 104 44.2
Lalb_Chr22g0359461 Lupinus albus HOM05D000558 ORTHO05D003075 1.7e-11 72.8 104 43.3
arahy.Tifrunner.gnm1.ann1.I0HFQI Arachis hypogaea HOM05D000558 ORTHO05D003075 3.0e-11 72.0 104 42.3
arahy.Tifrunner.gnm1.ann1.K4UY0G Arachis hypogaea HOM05D000558 ORTHO05D003075 3.0e-11 72.0 104 42.3
MD14G1000500 Malus domestica HOM05D000558 ORTHO05D003075 3.0e-11 72.0 100 48.0
Medtr7g085070 Medicago truncatula HOM05D000558 ORTHO05D003075 3.0e-11 72.0 106 44.3
Eucgr.A02066 Eucalyptus grandis HOM05D000558 ORTHO05D003075 3.9e-11 71.6 97 46.4
VMungo1383G0665 Vigna mungo HOM05D000558 ORTHO05D003075 5.1e-11 71.2 104 43.3
Nn4g25032 Nelumbo nucifera HOM05D000558 ORTHO05D003075 8.7e-11 70.5 96 44.8
Hund03237 Selenicereus undatus HOM05D000558 ORTHO05D003075 8.7e-11 70.5 101 44.6
Psat3g091120 Pisum sativum HOM05D000558 ORTHO05D003075 1.1e-10 70.1 104 42.3
Sed0009629 Sechium edule HOM05D000558 ORTHO05D003075 1.1e-10 70.1 100 44.0
Oeu050292.1 Olea europaea HOM05D000558 ORTHO05D003075 1.5e-10 69.7 101 48.5
Oeu050293.1 Olea europaea HOM05D000558 ORTHO05D003075 1.5e-10 69.7 101 48.5
Lsat_1_v5_gn_1_59001 Lactuca sativa HOM05D000558 ORTHO05D003075 1.9e-10 69.3 96 44.8
Dinv37004 Davidia involucrata HOM05D000558 ORTHO05D003075 2.5e-10 68.9 96 43.8
Phvul.001G097000 Phaseolus vulgaris HOM05D000558 ORTHO05D003075 2.5e-10 68.9 104 40.4
Prupe.7G000900 Prunus persica HOM05D000558 ORTHO05D003075 2.5e-10 68.9 100 45.0
Ca_08247_v3 Cicer arietinum L. HOM05D000558 ORTHO05D001857 3.3e-10 68.6 104 40.4
MELO3C008793.2 Cucumis melo HOM05D000558 ORTHO05D003075 3.3e-10 68.6 97 41.2
CsaV3_4G013360 Cucumis sativus L. HOM05D000558 ORTHO05D003075 3.3e-10 68.6 97 41.2
PGR042G1586 Punica granatum HOM05D000558 ORTHO05D003075 3.3e-10 68.6 101 45.5
CiPaw.03G236300 Carya illinoinensis HOM05D000558 ORTHO05D003075 4.3e-10 68.2 101 47.5
HanXRQChr13g0397611 Helianthus annuus HOM05D000558 ORTHO05D003075 4.3e-10 68.2 96 43.8
Lalb_Chr24g0403071 Lupinus albus HOM05D000558 ORTHO05D003075 4.3e-10 68.2 104 41.3
CDE05G0757 Ceratophyllum demersum HOM05D000558 ORTHO05D003075 5.6e-10 67.8 100 42.0
SGA_v2.0_scaffold12G06252 Striga asiatica HOM05D000558 ORTHO05D003075 5.6e-10 67.8 103 41.7
MBI18_g38872_MAGBIO Magnolia biondii HOM05D000558 ORTHO05D003075 7.3e-10 67.4 100 44.0
RcHm_v2.0_Chr3g0497551 Rosa chinensis HOM05D000558 ORTHO05D003075 7.3e-10 67.4 100 43.0
Atru.chr2.1256 Acer truncatum HOM05D000558 ORTHO05D003075 1.3e-09 66.6 96 40.6
Atru.chr5.346 Acer truncatum HOM05D000558 ORTHO05D003075 1.3e-09 66.6 96 40.6
Actinidia17314 Actinidia chinensis HOM05D000558 ORTHO05D003075 1.3e-09 66.6 96 43.8
Peaxi162Scf00003g04830 Petunia axillaris HOM05D000558 ORTHO05D003075 1.3e-09 66.6 96 43.8
Actinidia38626 Actinidia chinensis HOM05D000558 ORTHO05D003075 1.6e-09 66.2 96 42.7
FvH4_6g00600 Fragaria vesca HOM05D000558 ORTHO05D003075 1.6e-09 66.2 101 43.6
FAN09G1157 Fragaria x ananassa HOM05D000558 ORTHO05D003075 1.6e-09 66.2 101 43.6
SalBow3G2963 Salvia bowleyana HOM05D000558 ORTHO05D003075 1.6e-09 66.2 101 43.6
ATR0796G064 Amborella trichopoda HOM05D000558 ORTHO05D003075 2.1e-09 65.9 102 46.1
ClCG04G005220 Citrullus lanatus HOM05D000558 ORTHO05D003075 2.1e-09 65.9 96 40.6
Haze_19391 Corylus avellana HOM05D000558 ORTHO05D003075 2.1e-09 65.9 100 45.0
ECA248G2202 Erigeron canadensis HOM05D000558 ORTHO05D001857 2.1e-09 65.9 97 45.4
FAN14G5661 Fragaria x ananassa HOM05D000558 ORTHO05D003075 2.1e-09 65.9 103 43.7
Lj1g0000038 Lotus japonicus HOM05D000558 ORTHO05D003075 2.1e-09 65.9 100 40.0
ECA233G6200 Erigeron canadensis HOM05D000558 ORTHO05D001857 2.8e-09 65.5 96 44.8
Lj1A1140T42 Lonicera japonica HOM05D000558 ORTHO05D003075 2.8e-09 65.5 96 43.8
Aqoxy5G02901 Aquilegia oxysepala HOM05D000558 ORTHO05D003075 4.8e-09 64.7 99 40.4
Cfa021586 Carpinus fangiana HOM05D000558 ORTHO05D001857 4.8e-09 64.7 100 45.0
Nitab4.5_0007223g0030 Nicotiana tabacum HOM05D000558 ORTHO05D003075 4.8e-09 64.7 100 45.0
Ah.10g033650 Amaranthus hybridus HOM05D000558 ORTHO05D003075 6.2e-09 64.3 98 41.8
Cc00_g09500 Coffea canephora HOM05D000558 ORTHO05D003075 6.2e-09 64.3 97 42.3
Lj2A356T43 Lonicera japonica HOM05D000558 ORTHO05D003075 6.2e-09 64.3 96 39.6
Nitab4.5_0000812g0160 Nicotiana tabacum HOM05D000558 ORTHO05D003075 6.2e-09 64.3 100 44.0
HanXRQChr01g0024451 Helianthus annuus HOM05D000558 ORTHO05D003075 8.1e-09 63.9 96 41.7
TAR362G1123 Trochodendron aralioides HOM05D000558 ORTHO05D003075 8.1e-09 63.9 96 41.7
unitig_0.g2408 Utricularia gibba HOM05D002780 ORTHO05D003254 8.1e-09 63.9 103 43.7
CANSAT78G1454 Cannabis sativa HOM05D000558 ORTHO05D003075 1.1e-08 63.5 100 40.0
SEGI_05353 Sequoiadendron giganteum HOM05D000558 ORTHO05D003075 1.1e-08 63.5 96 41.7
Solyc12g019690.2 Solanum lycopersicum HOM05D000558 ORTHO05D003075 1.1e-08 63.5 92 43.5
HPP92_016975 Vanilla planifolia HOM05D000558 ORTHO05D003075 1.1e-08 63.5 100 40.0
Sopen12g009990 Solanum pennellii HOM05D000558 ORTHO05D003075 1.4e-08 63.2 92 43.5
Psat1g096840 Pisum sativum HOM05D000558 ORTHO05D003075 1.8e-08 62.8 104 38.5
QL07p020821 Quercus lobata HOM05D000558 ORTHO05D003075 1.8e-08 62.8 100 43.0
Actinidia22100 Actinidia chinensis HOM05D000558 ORTHO05D003075 2.4e-08 62.4 96 39.6
EL10Ac2g03644 Beta vulgaris HOM05D000558 ORTHO05D003075 2.4e-08 62.4 98 38.8
Glyma.02G069800 Glycine max HOM05D000558 ORTHO05D003075 2.4e-08 62.4 104 40.4
Oeu014723.2 Olea europaea HOM05D000558 ORTHO05D003075 2.4e-08 62.4 97 46.4
TPR.G6107 Trifolium pratense HOM05D000558 ORTHO05D003075 3.1e-08 62.0 100 37.0
ATR0568G170 Amborella trichopoda HOM05D000558 ORTHO05D003075 4.0e-08 61.6 96 39.6
AUR62020704 Chenopodium quinoa HOM05D000558 ORTHO05D003075 4.0e-08 61.6 98 39.8
Glyma.16G151300 Glycine max HOM05D000558 ORTHO05D003075 4.0e-08 61.6 104 39.4
HPP92_017318 Vanilla planifolia HOM05D000558 ORTHO05D003075 4.0e-08 61.6 100 43.0
DCAR_019901 Daucus carota HOM05D000558 ORTHO05D003075 5.3e-08 61.2 96 41.7
Lsat_1_v5_gn_6_38381 Lactuca sativa HOM05D000558 ORTHO05D003075 5.3e-08 61.2 96 40.6
Sc06g0001430 Simmondsia chinensis HOM05D000558 ORTHO05D003075 5.3e-08 61.2 102 37.3
Solyc10g078490.2 Solanum lycopersicum HOM05D000558 ORTHO05D003075 5.3e-08 61.2 100 40.0
CAN.G415.6 Capsicum annuum HOM05D000558 ORTHO05D003075 6.9e-08 60.8 92 41.3
Ciclev10021916m.g Citrus clementina HOM05D000558 ORTHO05D003075 6.9e-08 60.8 96 40.6
Manes.09G144400 Manihot esculenta HOM05D000558 ORTHO05D003075 6.9e-08 60.8 100 39.0
Rhsim04G0085200 Rhododendron simsii HOM05D000558 ORTHO05D003075 6.9e-08 60.8 100 43.0
TPR.G5889 Trifolium pratense HOM05D000558 ORTHO05D003075 6.9e-08 60.8 104 37.5
TWI60G1089 Tripterygium wilfordii HOM05D000558 ORTHO05D003075 6.9e-08 60.8 100 39.0
DCAR_013699 Daucus carota HOM05D000558 ORTHO05D001857 9.0e-08 60.5 103 42.7
MD17G1098100 Malus domestica HOM05D000558 ORTHO05D003075 9.0e-08 60.5 97 40.2
RcHm_v2.0_Chr2g0159011 Rosa chinensis HOM05D000558 ORTHO05D003075 9.0e-08 60.5 101 39.6
DCAR_019902 Daucus carota HOM05D004211 ORTHO05D005559 1.5e-07 59.7 102 42.2
PGSC0003DMG400018823 Solanum tuberosum HOM05D000558 ORTHO05D003075 1.5e-07 59.7 92 40.2
AUR62028020 Chenopodium quinoa HOM05D000558 ORTHO05D003075 2.0e-07 59.3 98 37.8
FAN02G4255 Fragaria x ananassa HOM05D000558 ORTHO05D003075 2.6e-07 58.9 101 39.6
TWI34G0942 Tripterygium wilfordii HOM05D000558 ORTHO05D003075 2.6e-07 58.9 100 39.0
CAN.G960.54 Capsicum annuum HOM05D000558 ORTHO05D003075 3.4e-07 58.5 97 40.2
VMungo0464G1828 Vigna mungo HOM05D000558 ORTHO05D003075 3.4e-07 58.5 109 39.4
Potri.019G030900 Populus trichocarpa HOM05D000558 ORTHO05D003075 4.5e-07 58.2 100 40.0
Migut.G00789 Erythranthe guttata HOM05D000558 ORTHO05D003075 7.6e-07 57.4 103 40.8
Medtr6g033010 Medicago truncatula HOM05D000558 ORTHO05D003075 7.6e-07 57.4 100 36.0
Nitab4.5_0000001g0350 Nicotiana tabacum HOM05D000558 ORTHO05D003075 7.6e-07 57.4 92 41.3
THA.LOC104827258 Tarenaya hassleriana HOM05D000558 ORTHO05D003075 7.6e-07 57.4 100 41.0
FvH4_6g43020 Fragaria vesca HOM05D000558 ORTHO05D003075 9.9e-07 57.0 101 38.6
Sabra19G0037500 Salix brachista HOM05D000558 ORTHO05D003075 9.9e-07 57.0 98 39.8
Sabra19G0040000 Salix brachista HOM05D000558 ORTHO05D003075 9.9e-07 57.0 98 39.8
DCAR_009669 Daucus carota HOM05D000558 ORTHO05D003075 1.3e-06 56.6 102 40.2
HanXRQChr14g0437991 Helianthus annuus HOM05D000558 ORTHO05D003075 1.3e-06 56.6 98 35.7
Phvul.004G077700 Phaseolus vulgaris HOM05D000558 ORTHO05D003075 1.3e-06 56.6 104 37.5
SEGI_03525 Sequoiadendron giganteum HOM05D000558 ORTHO05D003075 1.3e-06 56.6 96 37.5
FAN09G4078 Fragaria x ananassa HOM05D000558 ORTHO05D003075 1.7e-06 56.2 101 38.6
Nitab4.5_0010699g0010 Nicotiana tabacum HOM05D000558 ORTHO05D003075 1.7e-06 56.2 92 40.2
FAN14G1295 Fragaria x ananassa HOM05D000558 ORTHO05D003075 2.2e-06 55.8 101 38.6
Lsat_1_v5_gn_2_59281 Lactuca sativa HOM05D000558 ORTHO05D003075 2.2e-06 55.8 98 39.8
Prupe.3G216100 Prunus persica HOM05D000558 ORTHO05D003075 2.2e-06 55.8 97 39.2
Lj2g0008883 Lotus japonicus HOM05D000558 ORTHO05D003075 2.9e-06 55.5 104 38.5
AT5G18290 Arabidopsis thaliana HOM05D000558 ORTHO05D003075 3.8e-06 55.1 94 37.2
Peaxi162Scf00076g00715 Petunia axillaris HOM05D000558 ORTHO05D003075 3.8e-06 55.1 92 38.0
Potri.013G053400 Populus trichocarpa HOM05D000558 ORTHO05D003075 4.9e-06 54.7 100 41.0
Duzib106G1557 Durio zibethinus HOM05D000558 ORTHO05D003075 6.4e-06 54.3 96 35.4
TAR629G1433 Trochodendron aralioides HOM05D000558 ORTHO05D003075 8.4e-06 53.9 96 38.5


User provided reference genes

Program Settings