Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb314950 Zea mays HOM05D000135 ORTHO05D000203 3.4e-74 282.0 185 100.0
Os09g0458700 Oryza sativa ssp. japonica HOM05D000135 ORTHO05D000203 2.5e-45 186.0 186 52.7
HPP92_010963 Vanilla planifolia HOM05D000135 ORTHO05D000203 2.7e-23 112.8 181 39.8
Haze_10074 Corylus avellana HOM05D000135 ORTHO05D000203 6.5e-17 91.7 183 32.8
CiPaw.05G006300 Carya illinoinensis HOM05D000135 ORTHO05D000203 8.5e-17 91.3 187 36.4
Cfa004516 Carpinus fangiana HOM05D000135 ORTHO05D000203 1.9e-16 90.1 183 32.2
Ciclev10029360m.g Citrus clementina HOM05D000135 ORTHO05D000203 3.2e-16 89.4 183 31.7
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 7.2e-16 88.2 182 30.8
MD05G1080100 Malus domestica HOM05D000135 ORTHO05D000203 2.1e-15 86.7 185 40.5
Cfa004515 Carpinus fangiana HOM05D000135 ORTHO05D000203 2.7e-15 86.3 161 34.2
CANSAT25G3257 Cannabis sativa HOM05D000135 ORTHO05D000203 4.7e-15 85.5 166 38.0
TAR381G0503 Trochodendron aralioides HOM05D000135 ORTHO05D000203 1.4e-14 84.0 164 48.2
RcHm_v2.0_Chr6g0257051 Rosa chinensis HOM05D000135 ORTHO05D000203 5.2e-14 82.0 187 45.5
Potri.009G102500 Populus trichocarpa HOM05D000135 ORTHO05D000203 1.2e-13 80.9 183 39.9
Atru.chr5.2710 Acer truncatum HOM05D000135 ORTHO05D000203 2.6e-13 79.7 163 32.5
FvH4_2g06140 Fragaria vesca HOM05D000135 ORTHO05D000203 2.6e-13 79.7 187 44.9
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 2.6e-13 79.7 187 44.9
Manes.07G082600 Manihot esculenta HOM05D000135 ORTHO05D000203 2.6e-13 79.7 183 40.4
Gohir.D13G038700 Gossypium hirsutum HOM05D000135 ORTHO05D000203 3.4e-13 79.3 183 30.1
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 7.5e-13 78.2 187 47.6
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 7.5e-13 78.2 187 47.6
Aqoxy5G01242 Aquilegia oxysepala HOM05D000135 ORTHO05D000203 9.8e-13 77.8 188 46.3
MD10G1094100 Malus domestica HOM05D000135 ORTHO05D000203 9.8e-13 77.8 185 39.5
GSVIVG01031752001 Vitis vinifera HOM05D000135 ORTHO05D000203 9.8e-13 77.8 183 40.4
Gorai.013G043400 Gossypium raimondii HOM05D000135 ORTHO05D000203 1.3e-12 77.4 183 29.5
PGR042G1319 Punica granatum HOM05D000135 ORTHO05D000203 1.3e-12 77.4 163 38.7
Atru.chr5.2711 Acer truncatum HOM05D000135 ORTHO05D000203 1.7e-12 77.0 163 41.7
Prupe.8G123900 Prunus persica HOM05D000135 ORTHO05D000203 1.7e-12 77.0 158 43.0
Gohir.A13G040000 Gossypium hirsutum HOM05D000135 ORTHO05D000203 2.8e-12 76.3 185 40.0
Actinidia27955 Actinidia chinensis HOM05D000135 ORTHO05D000203 3.7e-12 75.9 183 30.1
BcaB07g31784 Brassica carinata HOM05D000135 ORTHO05D000203 8.3e-12 74.7 188 29.3
BolC9t54168H Brassica oleracea HOM05D000135 ORTHO05D000203 8.3e-12 74.7 188 29.3
QL11p035985 Quercus lobata HOM05D000135 ORTHO05D000203 1.4e-11 73.9 162 37.7
A09p10820 Brassica napus HOM05D000135 ORTHO05D000203 1.8e-11 73.6 188 28.7
BraA09t36724Z Brassica rapa HOM05D000135 ORTHO05D000203 1.8e-11 73.6 188 28.7
COL.COLO4_32661 Corchorus olitorius HOM05D000135 ORTHO05D000203 1.8e-11 73.6 162 30.9
TWI79G0422 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 1.8e-11 73.6 160 41.2
CDE04G2253 Ceratophyllum demersum HOM05D002198 ORTHO05D002409 4.1e-11 72.4 121 38.8
BcaC04g23042 Brassica carinata HOM05D000135 ORTHO05D000203 7.0e-11 71.6 188 28.7
C09p12790 Brassica napus HOM05D000135 ORTHO05D000203 7.0e-11 71.6 188 28.7
Thhalv10022869m.g Eutrema salsugineum HOM05D000135 ORTHO05D000203 1.6e-10 70.5 188 29.8
MBI02_g02983_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000203 1.6e-10 70.5 172 33.1
PSO210G1763 Papaver somniferum HOM05D000135 ORTHO05D000203 1.6e-10 70.5 164 43.3
PSO170G0143 Papaver somniferum HOM05D000135 ORTHO05D000203 2.7e-10 69.7 164 42.7
Carub.0003s2954 Capsella rubella HOM05D000135 ORTHO05D000203 3.5e-10 69.3 169 33.7
CARHR106030 Cardamine hirsuta HOM05D000135 ORTHO05D000203 3.5e-10 69.3 169 37.9
Sp3g28920 Schrenkiella parvula HOM05D000135 ORTHO05D000203 3.5e-10 69.3 188 36.2
VMungo0251G3651 Vigna mungo HOM05D000135 ORTHO05D000203 3.5e-10 69.3 165 39.4
Ca_18679_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 4.5e-10 68.9 186 38.7
Peaxi162Scf00152g00004 Petunia axillaris HOM05D000135 ORTHO05D000203 5.9e-10 68.6 184 37.0
Phvul.003G292700 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 5.9e-10 68.6 187 29.9
CSS0001406 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 7.7e-10 68.2 183 40.4
AL3G47450 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 1.0e-09 67.8 169 33.1
CSS0005567 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 1.7e-09 67.0 183 38.8
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 2.3e-09 66.6 182 36.8
CSS0017640 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 2.3e-09 66.6 183 39.9
Glyma.07G212000 Glycine max HOM05D000135 ORTHO05D000203 2.3e-09 66.6 187 36.4
ECA238G2850 Erigeron canadensis HOM05D000135 ORTHO05D000203 3.8e-09 65.9 161 39.8
Oeu010587.1 Olea europaea HOM05D001586 ORTHO05D001543 3.8e-09 65.9 164 30.5
SGA_v2.0_scaffold90G27662 Striga asiatica HOM05D000135 ORTHO05D000203 5.0e-09 65.5 185 28.1
Aqoxy5G01243 Aquilegia oxysepala HOM05D000135 ORTHO05D000203 6.5e-09 65.1 165 30.3
PGR142G3781 Punica granatum HOM05D000135 ORTHO05D000203 6.5e-09 65.1 188 37.8
Aa31LG8G13310 Aethionema arabicum HOM05D000135 ORTHO05D000203 8.6e-09 64.7 176 30.1
Migut.B00343 Erythranthe guttata HOM05D000135 ORTHO05D000203 8.6e-09 64.7 183 37.7
HanXRQChr16g0501291 Helianthus annuus HOM05D000135 ORTHO05D000203 1.1e-08 64.3 182 36.8
arahy.Tifrunner.gnm1.ann1.0RG3QL Arachis hypogaea HOM05D000135 ORTHO05D000203 1.5e-08 63.9 182 43.4
Cc02_g18730 Coffea canephora HOM05D000135 ORTHO05D000203 1.5e-08 63.9 183 38.3
Manes.10G056100 Manihot esculenta HOM05D000135 ORTHO05D000203 1.5e-08 63.9 184 28.3
TAR628G0143 Trochodendron aralioides HOM05D000135 ORTHO05D000203 1.5e-08 63.9 159 28.3
TAR628G0636 Trochodendron aralioides HOM05D000135 ORTHO05D000203 1.5e-08 63.9 159 28.3
Lsat_1_v5_gn_2_84220 Lactuca sativa HOM05D000135 ORTHO05D000203 1.9e-08 63.5 182 34.1
Lalb_Chr16g0384691 Lupinus albus HOM05D000135 ORTHO05D000203 2.5e-08 63.2 183 42.1
ECA234G2126 Erigeron canadensis HOM05D000135 ORTHO05D000203 5.5e-08 62.0 153 40.5
Hma1.2p1_0370F.1_g137840 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 5.5e-08 62.0 183 32.8
PGSC0003DMG402025892 Solanum tuberosum HOM05D000135 ORTHO05D000203 7.2e-08 61.6 183 37.2
Lj4g0025559 Lotus japonicus HOM05D000135 ORTHO05D000203 1.2e-07 60.8 186 34.4
Sed0018642 Sechium edule HOM05D000135 ORTHO05D000203 2.8e-07 59.7 160 27.5
ATR0100G064 Amborella trichopoda HOM05D000135 ORTHO05D000203 3.6e-07 59.3 139 28.8
Medtr4g086260 Medicago truncatula HOM05D000135 ORTHO05D000203 4.7e-07 58.9 198 33.3
PGR142G2931 Punica granatum HOM05D000135 ORTHO05D000203 6.1e-07 58.5 194 39.7
HanXRQChr14g0442861 Helianthus annuus HOM05D000135 ORTHO05D000203 8.0e-07 58.2 159 28.9
CsaV3_7G008650 Cucumis sativus L. HOM05D000135 ORTHO05D000203 1.0e-06 57.8 179 38.5
Oeu025574.1 Olea europaea HOM05D000135 ORTHO05D000203 1.0e-06 57.8 165 40.0
Actinidia36498 Actinidia chinensis HOM05D000135 ORTHO05D000203 1.8e-06 57.0 184 36.4
CiPaw.01G018900 Carya illinoinensis HOM05D000135 ORTHO05D000203 1.8e-06 57.0 193 37.3
AUR62003869 Chenopodium quinoa HOM05D000135 ORTHO05D000203 1.8e-06 57.0 119 47.1
SEGI_31669 Sequoiadendron giganteum HOM05D000135 ORTHO05D000203 2.3e-06 56.6 180 24.4
Ah.02g124280 Amaranthus hybridus HOM05D000135 ORTHO05D000203 3.0e-06 56.2 164 36.6
ClCG02G005880 Citrullus lanatus HOM05D000135 ORTHO05D000203 3.0e-06 56.2 179 38.0
MELO3C018445.2 Cucumis melo HOM05D000135 ORTHO05D000203 3.0e-06 56.2 179 38.5
Dinv39860 Davidia involucrata HOM05D000135 ORTHO05D000203 3.0e-06 56.2 137 43.1
Eucgr.G01446 Eucalyptus grandis HOM05D000135 ORTHO05D000203 3.0e-06 56.2 134 26.9
TPR.G28489 Trifolium pratense HOM05D000135 ORTHO05D000203 3.0e-06 56.2 198 34.8
CSS0025741 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 4.0e-06 55.8 124 46.8
CSS0041481 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 4.0e-06 55.8 124 46.8
Nitab4.5_0000292g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000203 5.2e-06 55.5 145 39.3
AT2G15680 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 6.8e-06 55.1 169 26.6


User provided reference genes

Program Settings