Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb314390 Zea mays HOM05D006227 ORTHO05D007714 1.1e-71 273.1 124 100.0
Os09g0516800 Oryza sativa ssp. japonica HOM05D006227 ORTHO05D007714 7.4e-41 170.6 119 66.4
HPP92_003486 Vanilla planifolia HOM05D006227 ORTHO05D007714 3.6e-35 151.8 85 75.3
HPP92_026884 Vanilla planifolia HOM05D006227 ORTHO05D007714 6.7e-34 147.5 85 74.1
CiPaw.13G141700 Carya illinoinensis HOM05D006227 ORTHO05D007714 1.2e-30 136.7 94 63.8
FvH4_3g30110 Fragaria vesca HOM05D006227 ORTHO05D007714 5.9e-30 134.4 93 63.4
TPR.G13925 Trifolium pratense HOM05D006227 ORTHO05D007714 1.7e-29 132.9 94 61.7
Sed0008116 Sechium edule HOM05D006227 ORTHO05D007714 6.5e-29 131.0 101 57.4
MELO3C004803.2 Cucumis melo HOM05D006227 ORTHO05D007714 8.5e-29 130.6 99 60.6
Potri.004G189300 Populus trichocarpa HOM05D006227 ORTHO05D007714 8.5e-29 130.6 103 58.3
Dinv29415 Davidia involucrata HOM05D006227 ORTHO05D007714 1.9e-28 129.4 94 59.6
Duzib170G0407 Durio zibethinus HOM05D006227 ORTHO05D007714 1.9e-28 129.4 93 61.3
Ciclev10029628m.g Citrus clementina HOM05D006227 ORTHO05D007714 2.5e-28 129.0 93 60.2
Eucgr.J00418 Eucalyptus grandis HOM05D006227 ORTHO05D007714 2.5e-28 129.0 94 60.6
RcHm_v2.0_Chr5g0055601 Rosa chinensis HOM05D006227 ORTHO05D007714 2.5e-28 129.0 93 62.4
Prupe.6G117700 Prunus persica HOM05D006227 ORTHO05D007714 3.2e-28 128.6 93 61.3
TAR623G1401 Trochodendron aralioides HOM05D006227 ORTHO05D007714 4.2e-28 128.3 103 56.3
Actinidia07213 Actinidia chinensis HOM05D006227 ORTHO05D007714 5.5e-28 127.9 103 53.4
CsaV3_1G014480 Cucumis sativus L. HOM05D006227 ORTHO05D007714 5.5e-28 127.9 101 57.4
FAN16G3386 Fragaria x ananassa HOM05D006227 ORTHO05D007714 5.5e-28 127.9 102 58.8
Hma1.2p1_0051F.1_g029840 Hydrangea macrophylla HOM05D006227 ORTHO05D007714 5.5e-28 127.9 99 59.6
vmacro14378 Vaccinium macrocarpon HOM05D006227 ORTHO05D007714 5.5e-28 127.9 90 63.3
ClCG01G012780 Citrullus lanatus HOM05D006227 ORTHO05D007714 1.2e-27 126.7 101 57.4
MD14G1038500 Malus domestica HOM05D006227 ORTHO05D007714 1.2e-27 126.7 86 64.0
Ca_18451_v3 Cicer arietinum L. HOM05D006227 ORTHO05D007714 2.1e-27 125.9 94 59.6
Atru.chr3.3392 Acer truncatum HOM05D006227 ORTHO05D007714 2.7e-27 125.6 90 60.0
arahy.Tifrunner.gnm1.ann1.U4LPMY Arachis hypogaea HOM05D006227 ORTHO05D007714 2.7e-27 125.6 100 56.0
CSS0048767 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 3.6e-27 125.2 97 58.8
SalBow5G0633 Salvia bowleyana HOM05D006227 ORTHO05D007714 3.6e-27 125.2 92 60.9
SalBow5G1351 Salvia bowleyana HOM05D006227 ORTHO05D007714 3.6e-27 125.2 92 60.9
GSVIVG01023006001 Vitis vinifera HOM05D006227 ORTHO05D007714 8.0e-27 124.0 94 56.4
SGA_v2.0_scaffold45G17093 Striga asiatica HOM05D006227 ORTHO05D007714 1.0e-26 123.6 90 60.0
ATR0712G069 Amborella trichopoda HOM05D006227 ORTHO05D007714 1.4e-26 123.2 94 58.5
DCAR_015484 Daucus carota HOM05D006227 ORTHO05D007714 1.8e-26 122.9 100 56.0
Nitab4.5_0002781g0010 Nicotiana tabacum HOM05D006227 ORTHO05D007714 1.8e-26 122.9 95 56.8
Psat7g105760 Pisum sativum HOM05D006227 ORTHO05D007714 2.3e-26 122.5 94 59.6
Thecc.09G292900 Theobroma cacao HOM05D006227 ORTHO05D007714 2.3e-26 122.5 93 57.0
SEGI_33746 Sequoiadendron giganteum HOM05D006227 ORTHO05D007714 3.0e-26 122.1 99 55.6
Manes.11G155900 Manihot esculenta HOM05D006227 ORTHO05D007714 5.2e-26 121.3 87 58.6
Psat7g105560 Pisum sativum HOM05D006227 ORTHO05D007714 5.2e-26 121.3 94 59.6
MSTRG.21069 Avicennia marina HOM05D006227 ORTHO05D007714 6.7e-26 120.9 93 57.0
Gohir.D09G092300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 6.7e-26 120.9 93 57.0
Gorai.006G108900 Gossypium raimondii HOM05D006227 ORTHO05D007714 6.7e-26 120.9 93 57.0
Gohir.A04G148400 Gossypium hirsutum HOM05D006227 ORTHO05D007714 8.8e-26 120.6 93 55.9
Oeu050173.1 Olea europaea HOM05D006227 ORTHO05D007714 8.8e-26 120.6 85 58.8
Solyc01g086860.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 8.8e-26 120.6 94 56.4
Sopen01g033870 Solanum pennellii HOM05D006227 ORTHO05D007714 8.8e-26 120.6 94 56.4
CANSAT54G1955 Cannabis sativa HOM05D006227 ORTHO05D007714 1.1e-25 120.2 87 58.6
CAN.G170.132 Capsicum annuum HOM05D006227 ORTHO05D007714 1.1e-25 120.2 86 60.5
Dinv12530 Davidia involucrata HOM05D006227 ORTHO05D007714 1.1e-25 120.2 85 61.2
Gohir.A03G000008 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.5e-25 119.8 93 55.9
ECA238G2178 Erigeron canadensis HOM05D006227 ORTHO05D007714 2.0e-25 119.4 90 57.8
Glyma.07G187100 Glycine max HOM05D006227 ORTHO05D007714 2.0e-25 119.4 96 55.2
Gorai.006G108700 Gossypium raimondii HOM05D006227 ORTHO05D007714 2.0e-25 119.4 93 57.0
Migut.D02328 Erythranthe guttata HOM05D006227 ORTHO05D007714 2.6e-25 119.0 93 54.8
MSTRG.18723 Avicennia marina HOM05D006227 ORTHO05D007714 3.3e-25 118.6 93 57.0
Duzib168G0197 Durio zibethinus HOM05D006227 ORTHO05D007714 4.4e-25 118.2 103 51.5
arahy.Tifrunner.gnm1.ann1.ME5340 Arachis hypogaea HOM05D006227 ORTHO05D007714 9.7e-25 117.1 108 51.9
Gohir.A09G092200 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.3e-24 116.7 93 55.9
Medtr3g014200 Medicago truncatula HOM05D006227 ORTHO05D007714 1.3e-24 116.7 100 56.0
Medtr4g092090 Medicago truncatula HOM05D006227 ORTHO05D007714 1.3e-24 116.7 95 56.8
EL10Ac9g21059 Beta vulgaris HOM05D006227 ORTHO05D007714 2.2e-24 115.9 94 53.2
Sc12g0004090 Simmondsia chinensis HOM05D006227 ORTHO05D007714 2.8e-24 115.5 93 52.7
CDE02G3751 Ceratophyllum demersum HOM05D006227 ORTHO05D007714 3.7e-24 115.2 103 53.4
Solyc01g112370.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 3.7e-24 115.2 94 55.3
Gohir.A08G253700 Gossypium hirsutum HOM05D006227 ORTHO05D007714 6.3e-24 114.4 93 52.7
Phvul.002G218500 Phaseolus vulgaris HOM05D006227 ORTHO05D007714 6.3e-24 114.4 105 50.5
Lalb_Chr09g0327121 Lupinus albus HOM05D006227 ORTHO05D007714 8.2e-24 114.0 99 53.5
PSO339G0999 Papaver somniferum HOM05D006227 ORTHO05D007714 1.1e-23 113.6 89 57.3
TWI56G0405 Tripterygium wilfordii HOM05D006227 ORTHO05D007714 1.4e-23 113.2 92 53.3
VMungo0251G3527 Vigna mungo HOM05D006227 ORTHO05D007714 1.4e-23 113.2 105 50.5
CARHR232720 Cardamine hirsuta HOM05D006227 ORTHO05D007714 7.0e-23 110.9 98 52.0
Cc01_g09910 Coffea canephora HOM05D006227 ORTHO05D007714 7.0e-23 110.9 93 51.6
Rhsim01G0209000 Rhododendron simsii HOM05D006227 ORTHO05D007714 7.0e-23 110.9 112 47.3
AT4G25315 Arabidopsis thaliana HOM05D006227 ORTHO05D007714 1.2e-22 110.2 98 53.1
Gohir.A10G243300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.6e-22 109.8 87 52.9
Sp7g23330 Schrenkiella parvula HOM05D006227 ORTHO05D007714 2.7e-22 109.0 95 54.7
A03p55890 Brassica napus HOM05D006227 ORTHO05D007714 4.5e-22 108.2 95 53.7
Sc06g0007110 Simmondsia chinensis HOM05D006227 ORTHO05D007714 5.9e-22 107.8 87 51.7
Carub.0008s1058 Capsella rubella HOM05D006227 ORTHO05D007714 7.7e-22 107.5 95 53.7
Gohir.D09G092100 Gossypium hirsutum HOM05D006227 ORTHO05D007714 7.7e-22 107.5 97 51.5
THA.LOC104799532 Tarenaya hassleriana HOM05D006227 ORTHO05D007714 1.3e-21 106.7 93 53.8
Carub.0007s1570 Capsella rubella HOM05D006227 ORTHO05D007714 2.9e-21 105.5 98 52.0
Pp3c23_15340 Physcomitrium patens HOM05D006227 ORTHO05D007714 2.9e-21 105.5 87 51.7
Hund07714 Selenicereus undatus HOM05D006227 ORTHO05D007714 2.9e-21 105.5 138 37.7
C07p54180 Brassica napus HOM05D006227 ORTHO05D007714 6.5e-21 104.4 89 52.8
BcaC06g32822 Brassica carinata HOM05D006227 ORTHO05D007714 1.1e-20 103.6 89 52.8
FAN11G2712 Fragaria x ananassa HOM05D006227 ORTHO05D007714 2.5e-20 102.4 71 62.0
CSS0049374 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 5.5e-20 101.3 104 48.1
QL01p013949 Quercus lobata HOM05D006227 ORTHO05D007714 9.4e-20 100.5 74 59.5
Peaxi162Scf00428g01022 Petunia axillaris HOM05D006227 ORTHO05D007714 1.6e-19 99.8 76 56.6
AagrBONN_evm.TU.Sc2ySwM_228.5102 Anthoceros agrestis HOM05D006227 ORTHO05D007714 2.1e-19 99.4 99 46.5
BcaNung06163 Brassica carinata HOM05D006227 ORTHO05D007714 2.1e-19 99.4 95 50.5
DCAR_018745 Daucus carota HOM05D006227 ORTHO05D007714 2.7e-19 99.0 72 59.7
AL7G27820 Arabidopsis lyrata HOM05D006227 ORTHO05D007714 3.6e-19 98.6 117 43.6
Mapoly0046s0116 Marchantia polymorpha HOM05D006227 ORTHO05D007714 6.1e-19 97.8 86 47.7
Nitab4.5_0006850g0030 Nicotiana tabacum HOM05D006227 ORTHO05D007714 1.0e-18 97.1 72 56.9
Nitab4.5_0001542g0090 Nicotiana tabacum HOM05D006227 ORTHO05D007714 3.0e-18 95.5 72 55.6
BraA03t14660Z Brassica rapa HOM05D006227 ORTHO05D007714 6.8e-18 94.4 117 42.7
HanXRQChr07g0197671 Helianthus annuus HOM05D006227 ORTHO05D007714 8.8e-18 94.0 72 55.6
Aqoxy2G01473 Aquilegia oxysepala HOM05D006227 ORTHO05D007714 1.5e-17 93.2 66 62.1
unitig_899.g15369 Utricularia gibba HOM05D006227 ORTHO05D007714 1.5e-17 93.2 67 61.2
Aa31sc16G160 Aethionema arabicum HOM05D006227 ORTHO05D007714 2.6e-17 92.4 112 44.6
BolC7t45904H Brassica oleracea HOM05D006227 ORTHO05D007714 2.6e-17 92.4 106 43.4
AUR62036497 Chenopodium quinoa HOM05D006227 ORTHO05D007714 1.3e-16 90.1 72 52.8
PGSC0003DMG400025251 Solanum tuberosum HOM05D006227 ORTHO05D007714 1.3e-16 90.1 72 55.6
AUR62037073 Chenopodium quinoa HOM05D006227 ORTHO05D007714 1.7e-16 89.7 72 52.8
Lj4g0025300 Lotus japonicus HOM05D006227 ORTHO05D007714 1.7e-16 89.7 72 52.8
Duzib170G0945 Durio zibethinus HOM05D006227 ORTHO05D007714 2.2e-16 89.4 72 51.4
AUR62023956 Chenopodium quinoa HOM05D006227 ORTHO05D007714 2.8e-16 89.0 70 52.9
PGR119G0591 Punica granatum HOM05D006227 ORTHO05D007714 8.3e-16 87.4 62 59.7
CSS0004675 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 1.8e-15 86.3 71 56.3
Nn6g35079 Nelumbo nucifera HOM05D006227 ORTHO05D007714 1.2e-14 83.6 71 53.5
SMO144G0106 Selaginella moellendorffii HOM05D006227 ORTHO05D007714 1.6e-14 83.2 87 42.5
Oeu023727.1 Olea europaea HOM05D006227 ORTHO05D007714 3.5e-14 82.0 65 53.8
MBI01_g43174_MAGBIO Magnolia biondii HOM05D006227 ORTHO05D007714 5.9e-14 81.3 75 49.3
Lalb_Chr16g0383271 Lupinus albus HOM05D006227 ORTHO05D007714 5.5e-12 74.7 61 55.7
Manes.04G010000 Manihot esculenta HOM05D006227 ORTHO05D007714 2.8e-08 62.4 37 64.9
MCO03G239 Micromonas commoda HOM05D006227 ORTHO05D007714 8.3e-08 60.8 98 34.7
MD03G1133000 Malus domestica HOM05D006227 ORTHO05D007714 2.4e-07 59.3 40 60.0
Lsat_1_v5_gn_2_96480 Lactuca sativa HOM05D006227 ORTHO05D007714 2.7e-06 55.8 40 55.0


User provided reference genes

Program Settings