Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb314250 Zea mays HOM05D007159 ORTHO05D009068 7.3e-116 420.6 221 100.0
THA.LOC104824199 Tarenaya hassleriana HOM05D007159 ORTHO05D009068 5.7e-52 208.4 138 73.2
Duzib128G1689 Durio zibethinus HOM05D007159 ORTHO05D009068 1.7e-51 206.8 149 69.8
QL04p022349 Quercus lobata HOM05D007159 ORTHO05D009068 4.8e-51 205.3 138 71.7
GSVIVG01004028001 Vitis vinifera HOM05D007159 ORTHO05D009068 4.8e-51 205.3 128 75.8
GSVIVG01012409001 Vitis vinifera HOM05D007159 ORTHO05D009068 4.8e-51 205.3 128 75.8
GSVIVG01012445001 Vitis vinifera HOM05D007159 ORTHO05D009068 1.8e-50 203.4 128 75.0
Glyma.04G126100 Glycine max HOM05D007159 ORTHO05D009068 2.4e-50 203.0 179 57.5
Ciclev10002366m.g Citrus clementina HOM05D007159 ORTHO05D009068 3.1e-50 202.6 138 69.6
COL.COLO4_32863 Corchorus olitorius HOM05D007159 ORTHO05D009068 5.4e-50 201.8 138 70.3
GSVIVG01004020001 Vitis vinifera HOM05D007159 ORTHO05D009068 5.4e-50 201.8 128 74.2
HPP92_004369 Vanilla planifolia HOM05D007159 ORTHO05D009068 7.0e-50 201.4 220 55.5
MD02G1270600 Malus domestica HOM05D007159 ORTHO05D009068 9.1e-50 201.1 144 68.8
Rhsim08G0052600 Rhododendron simsii HOM05D007159 ORTHO05D009068 1.2e-49 200.7 141 70.2
arahy.Tifrunner.gnm1.ann1.XLH660 Arachis hypogaea HOM05D007159 ORTHO05D009068 3.5e-49 199.1 140 68.6
Potri.003G190101 Populus trichocarpa HOM05D007159 ORTHO05D009068 3.5e-49 199.1 138 68.1
Migut.B01174 Erythranthe guttata HOM05D007159 ORTHO05D009068 4.5e-49 198.7 147 70.1
CiPaw.13G018000 Carya illinoinensis HOM05D007159 ORTHO05D009068 5.9e-49 198.4 144 66.0
SGA_v2.0_scaffold141G35535 Striga asiatica HOM05D007159 ORTHO05D009068 5.9e-49 198.4 151 68.2
VMungo1080G1031 Vigna mungo HOM05D007159 ORTHO05D009068 1.3e-48 197.2 159 62.9
Thhalv10017229m.g Eutrema salsugineum HOM05D007159 ORTHO05D009068 2.2e-48 196.4 138 68.8
RcHm_v2.0_Chr3g0462781 Rosa chinensis HOM05D007159 ORTHO05D009068 2.2e-48 196.4 146 65.8
Manes.11G009800 Manihot esculenta HOM05D007159 ORTHO05D009068 2.9e-48 196.1 141 68.8
Phvul.005G013300 Phaseolus vulgaris HOM05D007159 ORTHO05D009068 3.8e-48 195.7 186 55.9
Thecc.10G133500 Theobroma cacao HOM05D007159 ORTHO05D009068 5.0e-48 195.3 224 50.9
C03p25530 Brassica napus HOM05D007159 ORTHO05D009068 6.5e-48 194.9 187 57.2
Medtr3g011770 Medicago truncatula HOM05D007159 ORTHO05D009068 8.5e-48 194.5 159 61.6
SalBow5G2583 Salvia bowleyana HOM05D007159 ORTHO05D009068 8.5e-48 194.5 144 67.4
Nn2g14588 Nelumbo nucifera HOM05D007159 ORTHO05D009068 1.1e-47 194.1 179 56.4
Hund06845 Selenicereus undatus HOM05D007159 ORTHO05D009068 1.1e-47 194.1 170 58.2
ATR0598G156 Amborella trichopoda HOM05D007159 ORTHO05D009068 1.5e-47 193.7 159 64.8
MSTRG.20491 Avicennia marina HOM05D007159 ORTHO05D009068 1.5e-47 193.7 144 68.8
Gorai.011G223700 Gossypium raimondii HOM05D007159 ORTHO05D009068 1.5e-47 193.7 144 64.6
FvH4_6g11251 Fragaria vesca HOM05D007159 ORTHO05D009068 1.9e-47 193.4 168 60.7
FAN02G0787 Fragaria x ananassa HOM05D007159 ORTHO05D009068 1.9e-47 193.4 174 58.6
FAN14G5227 Fragaria x ananassa HOM05D007159 ORTHO05D009068 1.9e-47 193.4 168 60.7
Gohir.A10G191800 Gossypium hirsutum HOM05D007159 ORTHO05D009068 1.9e-47 193.4 223 49.3
A03p21540 Brassica napus HOM05D007159 ORTHO05D009068 2.5e-47 193.0 190 57.4
AT2G38695 Arabidopsis thaliana HOM05D007159 ORTHO05D009068 3.2e-47 192.6 129 71.3
BraA03t11390Z Brassica rapa HOM05D007159 ORTHO05D009068 3.2e-47 192.6 171 60.2
Sp4g21050 Schrenkiella parvula HOM05D007159 ORTHO05D009068 3.2e-47 192.6 207 54.6
TPR.G30403 Trifolium pratense HOM05D007159 ORTHO05D009068 3.2e-47 192.6 159 63.5
Cc00_g21840 Coffea canephora HOM05D007159 ORTHO05D009068 4.2e-47 192.2 159 62.9
Lj3g0023531 Lotus japonicus HOM05D007159 ORTHO05D009068 4.2e-47 192.2 165 59.4
Psat5g224840 Pisum sativum HOM05D007159 ORTHO05D009068 4.2e-47 192.2 131 69.5
BcaNung04831 Brassica carinata HOM05D007159 ORTHO05D009068 5.5e-47 191.8 129 70.5
BolC3t14940H Brassica oleracea HOM05D007159 ORTHO05D009068 5.5e-47 191.8 129 72.1
Aqoxy1G00016 Aquilegia oxysepala HOM05D007159 ORTHO05D009068 9.5e-47 191.0 125 72.0
FAN14G2984 Fragaria x ananassa HOM05D007159 ORTHO05D009068 9.5e-47 191.0 168 60.1
PSO339G3610 Papaver somniferum HOM05D007159 ORTHO05D009068 9.5e-47 191.0 212 50.5
Lalb_Chr18g0048161 Lupinus albus HOM05D007159 ORTHO05D009068 1.2e-46 190.7 159 59.7
CARHR133370 Cardamine hirsuta HOM05D007159 ORTHO05D009068 1.6e-46 190.3 148 64.2
Eucgr.G03186 Eucalyptus grandis HOM05D007159 ORTHO05D009068 2.1e-46 189.9 136 67.6
Sopen06g021330 Solanum pennellii HOM05D007159 ORTHO05D009068 2.1e-46 189.9 138 67.4
Carub.0004s2069 Capsella rubella HOM05D007159 ORTHO05D009068 2.7e-46 189.5 182 56.0
PGSC0003DMG402002094 Solanum tuberosum HOM05D007159 ORTHO05D009068 3.6e-46 189.1 138 66.7
Gohir.D10G199566 Gossypium hirsutum HOM05D007159 ORTHO05D009068 8.0e-46 188.0 124 71.8
Solyc06g061130.4 Solanum lycopersicum HOM05D007159 ORTHO05D009068 1.8e-45 186.8 198 53.5
TWI63G1065 Tripterygium wilfordii HOM05D007159 ORTHO05D009068 1.8e-45 186.8 131 66.4
Nitab4.5_0000256g0440 Nicotiana tabacum HOM05D007159 ORTHO05D009068 2.3e-45 186.4 122 71.3
TAR623G0509 Trochodendron aralioides HOM05D007159 ORTHO05D009068 3.0e-45 186.0 191 51.8
AL4G35990 Arabidopsis lyrata HOM05D007159 ORTHO05D009068 5.2e-45 185.3 129 68.2
Nitab4.5_0006066g0020 Nicotiana tabacum HOM05D007159 ORTHO05D009068 6.8e-45 184.9 122 70.5
Actinidia35758 Actinidia chinensis HOM05D007159 ORTHO05D009068 1.2e-44 184.1 118 74.6
AUR62035525 Chenopodium quinoa HOM05D007159 ORTHO05D009068 1.5e-44 183.7 137 65.7
PGR031G3393 Punica granatum HOM05D007159 ORTHO05D009068 4.4e-44 182.2 141 62.4
Aa31sc689G20 Aethionema arabicum HOM05D007159 ORTHO05D009068 1.4e-42 177.2 138 65.2
Lsat_1_v5_gn_7_31321 Lactuca sativa HOM05D007159 ORTHO05D009068 9.2e-42 174.5 122 67.2
SEGI_36712 Sequoiadendron giganteum HOM05D007159 ORTHO05D009068 1.6e-41 173.7 125 68.8
Aa31sc26G60 Aethionema arabicum HOM05D007159 ORTHO05D009068 5.9e-41 171.8 154 59.1
ClCG11G012910 Citrullus lanatus HOM05D007159 ORTHO05D009068 7.7e-41 171.4 111 70.3
EL10Ac4g08838 Beta vulgaris HOM05D007159 ORTHO05D009068 2.3e-40 169.9 113 71.7
Mapoly0102s0032 Marchantia polymorpha HOM05D007159 ORTHO05D009068 5.0e-40 168.7 130 63.8
ECA236G3649 Erigeron canadensis HOM05D007159 ORTHO05D009068 3.6e-38 162.5 123 65.0
HanXRQChr15g0480981 Helianthus annuus HOM05D007159 ORTHO05D009068 8.0e-38 161.4 113 67.3
CsaV3_5G029340 Cucumis sativus L. HOM05D007159 ORTHO05D009068 1.0e-37 161.0 158 57.6
AagrBONN_evm.TU.Sc2ySwM_344.1718 Anthoceros agrestis HOM05D007159 ORTHO05D009068 1.5e-36 157.1 152 55.3
SMO137G0134 Selaginella moellendorffii HOM05D007159 ORTHO05D009068 8.3e-35 151.4 124 59.7
arahy.Tifrunner.gnm1.ann1.T46YUH Arachis hypogaea HOM05D007159 ORTHO05D009068 1.1e-34 151.0 137 55.5
DCAR_001925 Daucus carota HOM05D007159 ORTHO05D009068 2.4e-34 149.8 98 72.4
Dinv23933 Davidia involucrata HOM05D007159 ORTHO05D009068 1.2e-33 147.5 98 71.4
Sc09g0004690 Simmondsia chinensis HOM05D007159 ORTHO05D009068 1.2e-33 147.5 99 74.7
Actinidia39400 Actinidia chinensis HOM05D007159 ORTHO05D009068 3.9e-32 142.5 106 67.9
Peaxi162Scf00615g00514 Petunia axillaris HOM05D007159 ORTHO05D009068 4.3e-31 139.0 92 71.7
CBR_g8263 Chara braunii HOM05D007159 ORTHO05D009068 7.3e-31 138.3 126 54.8
Ah.06g191300 Amaranthus hybridus HOM05D007159 ORTHO05D009068 9.5e-31 137.9 149 53.0
AUR62041642 Chenopodium quinoa HOM05D007159 ORTHO05D009068 5.2e-29 132.1 124 56.5
GSVIVG01012423001 Vitis vinifera HOM05D007159 ORTHO05D009068 2.0e-28 130.2 83 75.9
GSVIVG01012347001 Vitis vinifera HOM05D007159 ORTHO05D009068 1.3e-27 127.5 113 60.2
Prupe.2G049700 Prunus persica HOM05D007159 ORTHO05D009068 1.9e-26 123.6 114 57.9
FAN05G1155 Fragaria x ananassa HOM05D007159 ORTHO05D009068 1.2e-25 120.9 146 49.3
MELO3C034053.2 Cucumis melo HOM05D007159 ORTHO05D009068 1.6e-25 120.6 101 61.4
Oeu058665.1 Olea europaea HOM05D007159 ORTHO05D009068 2.0e-25 120.2 71 77.5
GSVIVG01012437001 Vitis vinifera HOM05D007159 ORTHO05D009068 8.6e-24 114.8 128 48.4
unitig_749.g13795 Utricularia gibba HOM05D007159 ORTHO05D009068 1.9e-23 113.6 80 68.8
Sed0014969 Sechium edule HOM05D007159 ORTHO05D009068 7.3e-23 111.7 86 64.0
Aa31sc19G60 Aethionema arabicum HOM05D007159 ORTHO05D009068 6.2e-22 108.6 83 63.9
QL04p022306 Quercus lobata HOM05D007159 ORTHO05D009068 8.3e-19 98.2 92 55.4
FAN09G0838 Fragaria x ananassa HOM05D007159 ORTHO05D009068 1.2e-17 94.4 174 37.9
PRCOL_00002415 Prasinoderma coloniale HOM05D007159 ORTHO05D009068 3.9e-16 89.4 124 43.5
Atru.chr12.1193 Acer truncatum HOM05D007159 ORTHO05D009068 1.9e-15 87.0 49 81.6
CANSAT78G1490 Cannabis sativa HOM05D007159 ORTHO05D009068 1.2e-14 84.3 115 41.7
Sed0016161 Sechium edule HOM05D007159 ORTHO05D009068 2.1e-14 83.6 70 58.6
Glyma.06G312500 Glycine max HOM05D007159 ORTHO05D009068 2.8e-14 83.2 63 61.9
MCO13G186 Micromonas commoda HOM05D007159 ORTHO05D009068 6.2e-14 82.0 236 33.1
Os04g0600100 Oryza sativa ssp. japonica HOM05D009116 ORTHO05D011299 4.9e-11 72.4 124 37.1
COL.COLO4_34141 Corchorus olitorius HOM05D009116 ORTHO05D011299 6.4e-11 72.0 147 34.0
Haze_02958 Corylus avellana HOM05D007159 ORTHO05D009068 1.1e-10 71.2 40 82.5
Nitab4.5_0003012g0090 Nicotiana tabacum HOM05D009116 ORTHO05D011299 1.9e-10 70.5 122 34.4
Migut.F00112 Erythranthe guttata HOM05D009116 ORTHO05D011299 2.4e-10 70.1 125 33.6
MSTRG.26944 Avicennia marina HOM05D009116 ORTHO05D011299 3.2e-10 69.7 122 32.8
Ciclev10012634m.g Citrus clementina HOM05D009116 ORTHO05D011299 3.2e-10 69.7 205 28.8
Eucgr.H00677 Eucalyptus grandis HOM05D009116 ORTHO05D011299 4.1e-10 69.3 125 34.4
Nitab4.5_0000115g0230 Nicotiana tabacum HOM05D009116 ORTHO05D011299 4.1e-10 69.3 122 33.6
EL10Ac1g00288 Beta vulgaris HOM05D009116 ORTHO05D011299 5.4e-10 68.9 122 33.6
Mapoly0065s0044 Marchantia polymorpha HOM05D009116 ORTHO05D011299 7.1e-10 68.6 119 33.6
PGR031G3920 Punica granatum HOM05D009116 ORTHO05D011299 1.2e-09 67.8 179 31.8
Oeu038114.2 Olea europaea HOM05D002675 ORTHO05D003322 1.6e-09 67.4 122 32.0
PGSC0003DMG400027028 Solanum tuberosum HOM05D009116 ORTHO05D011299 2.1e-09 67.0 122 32.8
Rhsim03G0219300 Rhododendron simsii HOM05D009116 ORTHO05D011299 3.5e-09 66.2 125 32.8
unitig_52.g17699 Utricularia gibba HOM05D009116 ORTHO05D011299 3.5e-09 66.2 118 33.1
Sopen06g029290 Solanum pennellii HOM05D009116 ORTHO05D011299 4.6e-09 65.9 122 32.0
Solyc06g072930.4 Solanum lycopersicum HOM05D009116 ORTHO05D011299 6.0e-09 65.5 122 32.0
Hund27206 Selenicereus undatus HOM05D009116 ORTHO05D011299 7.8e-09 65.1 122 33.6
CDE02G3635 Ceratophyllum demersum HOM05D009116 ORTHO05D011299 1.3e-08 64.3 119 31.9
AagrBONN_evm.TU.Sc2ySwM_368.2113 Anthoceros agrestis HOM05D009116 ORTHO05D011299 8.6e-08 61.6 122 33.6
CAN.G65.136 Capsicum annuum HOM05D009116 ORTHO05D011299 8.6e-08 61.6 218 29.4
Nn1g02040 Nelumbo nucifera HOM05D009116 ORTHO05D011299 1.1e-07 61.2 88 35.2
Pp3c5_14710 Physcomitrium patens HOM05D009116 ORTHO05D011299 2.5e-07 60.1 122 27.9
CBR_g20118 Chara braunii HOM05D009116 ORTHO05D011299 9.6e-07 58.2 129 26.4
Pp3c2_11540 Physcomitrium patens HOM05D009116 ORTHO05D011299 8.1e-06 55.1 125 31.2
QL04p022221 Quercus lobata HOM05D000002 ORTHO05D000001 8.1e-06 55.1 66 51.5


User provided reference genes

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