Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 0.0e+00 1570.8 769 100.0
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 0.0e+00 1504.6 769 96.0
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 0.0e+00 1177.2 768 75.9
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 3.3e-296 1021.5 781 64.9
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 2.1e-287 992.3 774 63.8
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 2.1e-282 975.7 784 63.4
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 2.7e-282 975.3 781 63.8
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 9.6e-280 966.8 782 62.4
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 5.8e-277 957.6 766 63.2
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 1.3e-276 956.4 768 63.4
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.2e-276 955.7 795 62.5
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 4.2e-275 951.4 767 63.0
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 9.3e-275 950.3 768 63.0
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 1.7e-273 946.0 767 62.5
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 6.6e-273 944.1 771 62.6
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.1e-272 943.3 767 62.3
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 2.5e-272 942.2 786 61.6
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 3.3e-272 941.8 763 62.4
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 4.3e-272 941.4 789 61.7
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 4.3e-272 941.4 768 63.0
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 7.3e-272 940.6 783 62.2
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 7.3e-272 940.6 783 62.2
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 7.3e-272 940.6 780 61.5
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 7.3e-272 940.6 768 62.5
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 9.6e-272 940.3 777 62.3
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.3e-271 939.9 767 62.1
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 2.1e-271 939.1 769 63.1
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 3.6e-271 938.3 767 62.6
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 1.4e-270 936.4 766 63.2
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 1.2e-269 933.3 780 60.5
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 5.8e-269 931.0 806 60.3
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 2.9e-268 928.7 777 60.7
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 2.9e-268 928.7 769 62.0
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 3.8e-268 928.3 785 60.6
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 3.8e-268 928.3 766 61.2
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 4.9e-268 927.9 774 60.9
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 1.9e-267 926.0 767 61.5
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 1.9e-267 926.0 790 60.9
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 1.2e-266 923.3 781 61.2
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 1.6e-266 922.9 772 61.3
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 2.1e-266 922.5 789 61.3
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 6.0e-266 921.0 776 61.0
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 6.0e-266 921.0 783 60.0
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 7.9e-266 920.6 788 61.0
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 1.3e-265 919.8 763 62.1
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 1.8e-265 919.5 773 59.9
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 3.9e-265 918.3 781 60.2
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 1.1e-264 916.8 778 59.8
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 1.5e-264 916.4 778 60.2
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 7.4e-264 914.1 782 59.8
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 7.4e-264 914.1 782 59.8
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 2.1e-263 912.5 779 61.0
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 2.8e-263 912.1 786 59.8
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 8.1e-263 910.6 782 59.7
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 8.1e-263 910.6 765 60.1
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.1e-262 910.2 767 61.3
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 1.8e-262 909.4 779 60.7
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 3.1e-262 908.7 768 60.9
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 6.9e-262 907.5 766 61.2
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 9.0e-262 907.1 770 60.9
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 1.2e-261 906.7 779 60.2
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 1.5e-261 906.4 783 58.9
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.4e-261 905.2 782 59.2
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 3.4e-261 905.2 779 60.1
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 1.7e-260 902.9 778 60.2
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 2.2e-260 902.5 735 63.0
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 3.8e-260 901.7 805 58.5
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 4.9e-260 901.4 771 60.4
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 4.9e-260 901.4 779 59.9
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 3.2e-259 898.7 760 59.6
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 6.0e-258 894.4 768 60.3
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 7.9e-258 894.0 766 60.4
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 3.9e-257 891.7 771 59.0
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 3.9e-257 891.7 785 59.4
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 3.9e-257 891.7 767 59.2
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.1e-256 890.2 769 59.9
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.3e-256 888.6 767 59.7
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 5.6e-256 887.9 766 59.4
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 9.6e-256 887.1 784 58.3
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 1.3e-255 886.7 779 59.4
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 1.6e-255 886.3 768 58.6
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 6.9e-254 880.9 773 59.5
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 6.9e-254 880.9 781 58.6
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 7.6e-253 877.5 764 58.8
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 7.6e-253 877.5 784 58.5
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 2.9e-252 875.5 763 59.8
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 4.9e-252 874.8 784 57.5
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 8.4e-252 874.0 761 58.6
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 8.4e-252 874.0 764 58.4
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 1.9e-251 872.8 764 58.2
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 1.9e-251 872.8 780 58.3
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 2.5e-251 872.5 779 58.8
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 7.1e-251 870.9 764 58.5
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.2e-250 870.2 771 59.1
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 1.2e-250 870.2 761 58.3
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 2.1e-250 869.4 823 55.9
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 3.5e-250 868.6 781 57.4
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 4.6e-250 868.2 775 57.4
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 1.0e-249 867.1 776 57.9
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 2.3e-249 865.9 764 57.9
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 1.1e-248 863.6 764 58.1
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 1.9e-248 862.8 776 58.1
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.3e-247 860.1 785 57.6
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 2.8e-247 859.0 783 56.7
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 8.2e-247 857.4 778 57.1
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 3.1e-246 855.5 763 57.1
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 5.3e-246 854.7 778 57.5
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 6.9e-246 854.4 778 56.3
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 2.6e-245 852.4 757 57.3
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 7.6e-245 850.9 762 57.2
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 7.6e-245 850.9 773 56.9
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 5.0e-244 848.2 759 57.0
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 4.2e-243 845.1 733 59.8
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 6.1e-242 841.3 780 56.9
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 1.8e-241 839.7 808 54.5
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 8.7e-241 837.4 775 56.9
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 2.5e-240 835.9 761 56.8
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 1.3e-236 823.5 788 56.0
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 1.9e-235 819.7 786 54.8
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 7.2e-235 817.8 753 56.7
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 5.7e-232 808.1 753 57.0
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 4.8e-231 805.1 780 53.7
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 2.2e-228 796.2 776 55.2
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 5.0e-228 795.0 777 55.2
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 8.5e-228 794.3 789 53.9
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 2.5e-227 792.7 771 55.0
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 2.5e-227 792.7 777 53.5
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 2.2e-223 779.6 710 58.5
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 2.6e-221 772.7 729 57.3
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 2.9e-220 769.2 848 50.7
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 2.9e-220 769.2 773 52.4
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 2.9e-220 769.2 777 52.3
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 2.1e-218 763.1 760 53.4
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 1.0e-217 760.8 760 53.9
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 3.0e-209 732.6 763 50.6
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 4.0e-209 732.3 775 52.6
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 1.2e-194 684.1 692 54.3
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 4.0e-193 679.1 674 53.6
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 4.7e-186 655.6 738 48.9
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 4.1e-174 615.9 757 45.7
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 7.6e-168 595.1 462 65.4
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 2.4e-166 590.1 766 43.3
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 3.2e-166 589.7 779 43.9
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 2.0e-160 570.5 767 44.2
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 3.4e-160 569.7 786 41.2
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 2.1e-149 533.9 789 39.2
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 2.9e-143 513.5 433 59.8
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 8.7e-140 501.9 422 60.2
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.1e-138 497.3 277 89.5
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 4.2e-134 483.0 409 59.7
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 4.2e-134 483.0 409 59.7
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 6.5e-127 459.1 384 59.4
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 2.3e-124 450.7 548 43.4
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 1.0e-119 435.3 281 72.6
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 5.5e-110 402.9 256 75.0
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.6e-109 401.4 461 48.6
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 6.8e-92 342.8 740 31.9
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 1.1e-62 245.7 756 26.7
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 1.3e-50 205.7 292 40.8
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.2e-49 201.1 93 93.5
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 1.1e-46 192.6 142 67.6
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 3.6e-45 187.6 191 51.3
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.0e-44 184.1 143 63.6
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.2e-41 174.5 173 53.8
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.9e-34 151.4 149 56.4
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 6.9e-28 130.2 75 73.3
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 1.5e-11 75.9 103 39.8
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 6.5e-10 70.5 46 71.7
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 1.2e-08 66.2 39 71.8
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 1.6e-08 65.9 66 50.0
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 7.9e-08 63.5 73 47.9


User provided reference genes

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