Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb311470 Zea mays HOM05D006711 ORTHO05D008104 4.5e-49 197.6 98 100.0
Os09g0375900 Oryza sativa ssp. japonica HOM05D006711 ORTHO05D008104 1.1e-36 156.4 84 91.7
EL10Ac5g10797 Beta vulgaris HOM05D006711 ORTHO05D008104 4.5e-25 117.9 86 73.3
Medtr4g106700 Medicago truncatula HOM05D006711 ORTHO05D008104 4.5e-25 117.9 74 82.4
Ca_21901_v3 Cicer arietinum L. HOM05D006711 ORTHO05D008104 1.7e-24 115.9 69 84.1
Glyma.05G035600 Glycine max HOM05D006711 ORTHO05D008104 2.9e-24 115.2 69 82.6
Phvul.003G198200 Phaseolus vulgaris HOM05D006711 ORTHO05D008104 2.9e-24 115.2 69 82.6
TPR.G37552 Trifolium pratense HOM05D006711 ORTHO05D008104 2.9e-24 115.2 80 76.2
Aqoxy3G00948 Aquilegia oxysepala HOM05D006711 ORTHO05D008104 3.8e-24 114.8 72 79.2
HPP92_010905 Vanilla planifolia HOM05D006711 ORTHO05D008104 3.8e-24 114.8 77 76.6
HPP92_010907 Vanilla planifolia HOM05D006711 ORTHO05D008104 3.8e-24 114.8 77 76.6
ATR1149G012 Amborella trichopoda HOM05D006711 ORTHO05D008104 8.5e-24 113.6 76 73.7
Hma1.2p1_0697F.1_g204840 Hydrangea macrophylla HOM05D006711 ORTHO05D008104 8.5e-24 113.6 65 86.2
TWI15G0492 Tripterygium wilfordii HOM05D006711 ORTHO05D008104 8.5e-24 113.6 76 75.0
Sc04g0001970 Simmondsia chinensis HOM05D006711 ORTHO05D008104 1.9e-23 112.5 77 75.3
DCAR_011220 Daucus carota HOM05D006711 ORTHO05D008104 2.5e-23 112.1 63 87.3
PSO063G1690 Papaver somniferum HOM05D006711 ORTHO05D008104 2.5e-23 112.1 71 77.5
vmacro05808 Vaccinium macrocarpon HOM05D006711 ORTHO05D008104 3.2e-23 111.7 66 83.3
CDE10G0118 Ceratophyllum demersum HOM05D001322 ORTHO05D001301 4.2e-23 111.3 65 86.2
Oeu059193.1 Olea europaea HOM05D006711 ORTHO05D008104 4.2e-23 111.3 63 87.3
PSO832G1815 Papaver somniferum HOM05D006711 ORTHO05D008104 4.2e-23 111.3 71 76.1
Prupe.5G177100 Prunus persica HOM05D006711 ORTHO05D008104 4.2e-23 111.3 64 85.9
MBI15_g24174_MAGBIO Magnolia biondii HOM05D006711 ORTHO05D008104 5.5e-23 110.9 87 70.1
MD06G1177900 Malus domestica HOM05D006711 ORTHO05D008104 5.5e-23 110.9 64 84.4
MD14G1184500 Malus domestica HOM05D006711 ORTHO05D008104 5.5e-23 110.9 64 84.4
PGR044G2080 Punica granatum HOM05D006711 ORTHO05D008104 5.5e-23 110.9 73 75.3
Gohir.A12G275900 Gossypium hirsutum HOM05D006711 ORTHO05D008104 7.2e-23 110.5 65 83.1
Gohir.D12G276600 Gossypium hirsutum HOM05D006711 ORTHO05D008104 7.2e-23 110.5 65 83.1
Gorai.008G297100 Gossypium raimondii HOM05D006711 ORTHO05D008104 7.2e-23 110.5 65 83.1
CDE10G0426 Ceratophyllum demersum HOM05D006711 ORTHO05D008104 9.4e-23 110.2 76 75.0
AUR62031000 Chenopodium quinoa HOM05D006711 ORTHO05D008104 9.4e-23 110.2 75 73.3
Oeu047317.1 Olea europaea HOM05D006711 ORTHO05D008104 9.4e-23 110.2 87 67.8
Migut.N03365 Erythranthe guttata HOM05D006711 ORTHO05D008104 1.2e-22 109.8 71 76.1
Thecc.03G007500 Theobroma cacao HOM05D006711 ORTHO05D008104 1.2e-22 109.8 70 78.6
Atru.chr9.2428 Acer truncatum HOM05D006711 ORTHO05D008104 1.6e-22 109.4 65 83.1
COL.COLO4_24770 Corchorus olitorius HOM05D006711 ORTHO05D008104 1.6e-22 109.4 65 81.5
Duzib084G0075 Durio zibethinus HOM05D006711 ORTHO05D008104 1.6e-22 109.4 70 78.6
Psat4g057240 Pisum sativum HOM05D006711 ORTHO05D008104 1.6e-22 109.4 69 79.7
SalBow6G5258 Salvia bowleyana HOM05D006711 ORTHO05D008104 1.6e-22 109.4 71 76.1
Sed0004980 Sechium edule HOM05D006711 ORTHO05D008104 1.6e-22 109.4 64 82.8
Hund09419 Selenicereus undatus HOM05D006711 ORTHO05D008104 1.6e-22 109.4 81 71.6
THA.LOC104821460 Tarenaya hassleriana HOM05D006711 ORTHO05D008104 1.6e-22 109.4 70 80.0
Ah.10g035450 Amaranthus hybridus HOM05D006711 ORTHO05D008104 2.1e-22 109.0 77 74.0
Cc07_g02450 Coffea canephora HOM05D006711 ORTHO05D008104 2.1e-22 109.0 66 81.8
Lj4g0001750 Lotus japonicus HOM05D006711 ORTHO05D008104 3.6e-22 108.2 78 73.1
Aa31LG11G810 Aethionema arabicum HOM05D006711 ORTHO05D008104 6.1e-22 107.5 70 80.0
Aa31LG4G16690 Aethionema arabicum HOM05D006711 ORTHO05D008104 6.1e-22 107.5 70 78.6
AL5G27360 Arabidopsis lyrata HOM05D006711 ORTHO05D008104 6.1e-22 107.5 70 78.6
CARHR156770 Cardamine hirsuta HOM05D006711 ORTHO05D008104 6.1e-22 107.5 70 78.6
Cfa019085 Carpinus fangiana HOM05D006711 ORTHO05D008104 6.1e-22 107.5 61 85.2
Ciclev10023110m.g Citrus clementina HOM05D006711 ORTHO05D008104 6.1e-22 107.5 70 78.6
Duzib068G0631 Durio zibethinus HOM05D006711 ORTHO05D008104 6.1e-22 107.5 65 80.0
Manes.14G068400 Manihot esculenta HOM05D006711 ORTHO05D008104 6.1e-22 107.5 71 76.1
Sp5g13950 Schrenkiella parvula HOM05D006711 ORTHO05D008104 6.1e-22 107.5 70 78.6
BcaC07g39289 Brassica carinata HOM05D006711 ORTHO05D008104 8.0e-22 107.1 70 78.6
A06p19610 Brassica napus HOM05D006711 ORTHO05D008104 8.0e-22 107.1 70 78.6
C08p22960 Brassica napus HOM05D006711 ORTHO05D008104 8.0e-22 107.1 70 78.6
BolC8t49933H Brassica oleracea HOM05D006711 ORTHO05D008104 8.0e-22 107.1 70 78.6
BraA06t25041Z Brassica rapa HOM05D006711 ORTHO05D008104 8.0e-22 107.1 70 78.6
PSO478G1559 Papaver somniferum HOM05D006711 ORTHO05D008104 8.0e-22 107.1 62 83.9
Actinidia33966 Actinidia chinensis HOM05D006711 ORTHO05D008104 1.0e-21 106.7 65 78.5
Thhalv10010870m.g Eutrema salsugineum HOM05D006711 ORTHO05D008104 1.0e-21 106.7 70 77.1
CANSAT11G1423 Cannabis sativa HOM05D006711 ORTHO05D008104 1.4e-21 106.3 62 82.3
arahy.Tifrunner.gnm1.ann1.5NY27E Arachis hypogaea HOM05D006711 ORTHO05D008104 1.8e-21 105.9 62 82.3
FvH4_5g05020 Fragaria vesca HOM05D006711 ORTHO05D008104 1.8e-21 105.9 64 81.2
FAN04G0211 Fragaria x ananassa HOM05D006711 ORTHO05D008104 1.8e-21 105.9 64 81.2
FAN08G2471 Fragaria x ananassa HOM05D006711 ORTHO05D008104 1.8e-21 105.9 64 81.2
FAN13G1278 Fragaria x ananassa HOM05D006711 ORTHO05D008104 1.8e-21 105.9 64 81.2
FAN18G1479 Fragaria x ananassa HOM05D006711 ORTHO05D008104 1.8e-21 105.9 64 81.2
FAN18G2156 Fragaria x ananassa HOM05D006711 ORTHO05D008104 1.8e-21 105.9 64 81.2
BcaB01g00848 Brassica carinata HOM05D006711 ORTHO05D008104 2.3e-21 105.5 70 77.1
ClCG01G014050 Citrullus lanatus HOM05D006711 ORTHO05D008104 2.3e-21 105.5 71 73.2
CsaV3_1G008300 Cucumis sativus L. HOM05D006711 ORTHO05D008104 2.3e-21 105.5 71 74.6
Potri.012G078000 Populus trichocarpa HOM05D006711 ORTHO05D008104 2.3e-21 105.5 64 81.2
Potri.015G073300 Populus trichocarpa HOM05D006711 ORTHO05D008104 2.3e-21 105.5 64 81.2
Sabra12G0055800 Salix brachista HOM05D006711 ORTHO05D008104 2.3e-21 105.5 70 75.7
Sabra15G0097500 Salix brachista HOM05D006711 ORTHO05D008104 2.3e-21 105.5 64 82.8
GSVIVG01007800001 Vitis vinifera HOM05D006711 ORTHO05D008104 2.3e-21 105.5 67 74.6
GSVIVG01032507001 Vitis vinifera HOM05D006711 ORTHO05D008104 2.3e-21 105.5 69 76.8
Cpa.g.sc134.10 Carica papaya HOM05D006711 ORTHO05D008104 3.0e-21 105.1 64 79.7
Eucgr.K02867 Eucalyptus grandis HOM05D006711 ORTHO05D008104 3.0e-21 105.1 69 78.3
PSO017G6527 Papaver somniferum HOM05D006711 ORTHO05D008104 4.0e-21 104.8 62 83.9
Lsat_1_v5_gn_4_181601 Lactuca sativa HOM05D006711 ORTHO05D008104 6.7e-21 104.0 80 71.2
HanXRQChr09g0265981 Helianthus annuus HOM05D006711 ORTHO05D008104 8.8e-21 103.6 81 69.1
Nitab4.5_0002792g0010 Nicotiana tabacum HOM05D006711 ORTHO05D008104 8.8e-21 103.6 61 82.0
MELO3C002246.2 Cucumis melo HOM05D006711 ORTHO05D008104 1.1e-20 103.2 71 73.2
THA.LOC104798980 Tarenaya hassleriana HOM05D000086 ORTHO05D008104 2.0e-20 102.4 62 82.3
Nitab4.5_0004762g0010 Nicotiana tabacum HOM05D006711 ORTHO05D008104 2.6e-20 102.1 61 80.3
Peaxi162Scf00429g00118 Petunia axillaris HOM05D006711 ORTHO05D008104 5.7e-20 100.9 71 69.0
CiPaw.12G024900 Carya illinoinensis HOM05D006711 ORTHO05D008104 9.7e-20 100.1 76 72.4
HanXRQChr12g0385511 Helianthus annuus HOM05D006711 ORTHO05D008104 1.7e-19 99.4 63 76.2
Sopen11g029530 Solanum pennellii HOM05D006711 ORTHO05D008104 2.8e-19 98.6 71 69.0
unitig_46.g17997 Utricularia gibba HOM05D006711 ORTHO05D008104 6.3e-19 97.4 96 58.3
Oeu006591.3 Olea europaea HOM05D006711 ORTHO05D008104 8.2e-19 97.1 86 61.6
CAN.G742.33 Capsicum annuum HOM05D006711 ORTHO05D008104 4.1e-18 94.7 61 73.8
AUR62008246 Chenopodium quinoa HOM05D001451 ORTHO05D008104 4.1e-18 94.7 60 80.0
Haze_07479 Corylus avellana HOM05D006711 ORTHO05D008104 4.5e-17 91.3 50 88.0
Eucgr.J02179 Eucalyptus grandis HOM05D006711 ORTHO05D008104 5.9e-17 90.9 63 68.3
Lalb_Chr12g0201501 Lupinus albus HOM05D006711 ORTHO05D008104 1.0e-16 90.1 71 70.4
QL10p013547 Quercus lobata HOM05D006711 ORTHO05D008104 1.0e-16 90.1 51 86.3
Rhsim10G0024700 Rhododendron simsii HOM05D006711 ORTHO05D008104 1.0e-16 90.1 54 79.6
CiPaw.11G029900 Carya illinoinensis HOM05D006711 ORTHO05D008104 1.7e-16 89.4 62 77.4
Rhsim10G0024900 Rhododendron simsii HOM05D006711 ORTHO05D008104 1.7e-16 89.4 52 82.7
PGSC0003DMG400003004 Solanum tuberosum HOM05D006711 ORTHO05D008104 1.7e-16 89.4 54 79.6
RcHm_v2.0_Chr7g0194021 Rosa chinensis HOM05D006711 ORTHO05D008104 3.8e-16 88.2 51 84.3
Carub.0005s1414 Capsella rubella HOM05D000086 ORTHO05D008104 6.5e-16 87.4 62 74.2
Sed0016611 Sechium edule HOM05D006711 ORTHO05D008104 1.1e-15 86.7 71 64.8
SEGI_30617 Sequoiadendron giganteum HOM05D006711 ORTHO05D008104 1.1e-15 86.7 61 67.2
CSS0024346 Camellia sinensis var. sinensis HOM05D006711 ORTHO05D008104 2.5e-15 85.5 55 74.5
TAR622G0690 Trochodendron aralioides HOM05D001464 ORTHO05D002836 2.1e-14 82.4 47 87.2
Rhsim08G0056600 Rhododendron simsii HOM05D000086 ORTHO05D000983 2.7e-14 82.0 48 85.4
Nn4g22854 Nelumbo nucifera HOM05D006711 ORTHO05D008104 6.1e-14 80.9 46 89.1
CBR_g49624 Chara braunii HOM05D006711 ORTHO05D008104 8.0e-14 80.5 65 63.1
ATR0820G148 Amborella trichopoda HOM05D006711 ORTHO05D008104 5.2e-13 77.8 65 64.6
ATR0661G003 Amborella trichopoda HOM05D006711 ORTHO05D008104 3.4e-12 75.1 65 63.1
Mapoly0124s0028 Marchantia polymorpha HOM05D006711 ORTHO05D008104 5.7e-12 74.3 63 60.3
PRCOL_00004863 Prasinoderma coloniale HOM05D006711 ORTHO05D008104 5.7e-12 74.3 60 60.0
HPP92_016979 Vanilla planifolia HOM05D006711 ORTHO05D008104 2.8e-11 72.0 42 83.3
AagrBONN_evm.TU.Sc2ySwM_368.1224 Anthoceros agrestis HOM05D006711 ORTHO05D008104 6.3e-11 70.9 52 69.2
Pp3c14_16830 Physcomitrium patens HOM05D006711 ORTHO05D008104 4.1e-10 68.2 57 61.4
Pp3c3_16770 Physcomitrium patens HOM05D006711 ORTHO05D008104 1.2e-09 66.6 66 53.0
Dinv35040 Davidia involucrata HOM05D006711 ORTHO05D008104 1.7e-08 62.8 38 84.2
SHI34267 Sapria himalayana HOM05D006711 ORTHO05D008104 2.1e-06 55.8 34 82.4


User provided reference genes

Program Settings