Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 3.2e-221 771.5 424 100.0
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 4.7e-103 379.0 344 67.2
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.1e-74 283.9 419 44.9
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 8.6e-73 278.5 414 48.8
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 1.5e-72 277.7 410 46.3
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 1.9e-72 277.3 410 46.3
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 7.3e-72 275.4 418 47.8
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 9.5e-72 275.0 420 46.4
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 2.1e-71 273.9 405 48.4
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 1.4e-70 271.2 424 46.7
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 5.2e-70 269.2 395 47.6
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 1.2e-69 268.1 405 45.4
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 2.0e-69 267.3 395 47.6
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 3.4e-69 266.5 423 45.9
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 7.6e-69 265.4 399 45.9
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 9.9e-69 265.0 422 44.8
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 9.9e-69 265.0 410 45.1
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.2e-68 263.8 422 44.5
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 3.8e-68 263.1 404 46.0
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 6.4e-68 262.3 406 46.8
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 8.4e-68 261.9 402 46.5
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.1e-67 261.5 395 47.1
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 1.4e-67 261.2 412 43.2
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 1.4e-67 261.2 420 45.0
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 1.4e-67 261.2 394 47.0
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 2.4e-67 260.4 430 45.6
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 5.4e-67 259.2 344 46.8
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 7.1e-67 258.8 334 48.8
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 2.1e-66 257.3 448 42.0
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 2.7e-66 256.9 406 44.8
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 6.0e-66 255.8 446 42.2
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 1.0e-65 255.0 409 44.0
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 1.0e-65 255.0 422 45.0
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 2.3e-65 253.8 410 44.6
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 3.0e-65 253.4 317 46.7
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 8.7e-65 251.9 409 43.8
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 1.5e-64 251.1 432 44.9
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 1.5e-64 251.1 399 44.1
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 1.5e-64 251.1 397 42.3
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 1.9e-64 250.8 379 44.1
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 1.9e-64 250.8 408 43.1
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 1.9e-64 250.8 417 45.3
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 4.3e-64 249.6 409 44.0
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 5.6e-64 249.2 414 45.2
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 9.6e-64 248.4 412 43.0
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 2.1e-63 247.3 384 44.0
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 3.6e-63 246.5 397 42.8
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 6.9e-62 242.3 327 47.7
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 6.9e-62 242.3 407 43.0
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 2.6e-61 240.4 415 42.7
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 4.4e-61 239.6 353 46.2
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 5.8e-61 239.2 361 46.5
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 2.2e-60 237.3 361 42.4
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 4.9e-60 236.1 369 43.1
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 6.4e-60 235.7 417 42.7
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 6.4e-60 235.7 411 44.5
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 6.4e-60 235.7 350 43.4
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 2.4e-59 233.8 351 41.3
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 2.4e-59 233.8 387 43.2
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 5.4e-59 232.6 391 44.8
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 5.4e-59 232.6 327 44.6
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 1.6e-58 231.1 431 39.9
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 2.1e-58 230.7 460 40.9
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 2.1e-58 230.7 396 42.7
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 2.1e-58 230.7 388 40.7
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 2.7e-58 230.3 441 41.5
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 7.8e-58 228.8 401 43.6
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 2.3e-57 227.3 410 42.7
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.0e-57 226.9 389 44.7
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 8.7e-57 225.3 364 42.3
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 8.7e-57 225.3 396 43.7
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 3.3e-56 223.4 431 40.8
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 4.3e-56 223.0 408 39.0
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 4.3e-56 223.0 427 42.9
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 5.6e-56 222.6 414 42.3
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 5.6e-56 222.6 398 41.2
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 1.3e-55 221.5 356 42.7
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 2.8e-55 220.3 390 42.6
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 2.8e-55 220.3 418 42.8
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 8.1e-55 218.8 406 41.1
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 4.0e-54 216.5 401 43.4
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 4.0e-54 216.5 406 41.4
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 5.3e-54 216.1 265 47.9
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 6.9e-54 215.7 523 37.9
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 2.6e-53 213.8 425 39.8
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 2.6e-53 213.8 251 49.4
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 3.4e-53 213.4 402 36.8
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 2.2e-52 210.7 232 51.7
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 3.8e-52 209.9 281 44.1
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 8.4e-52 208.8 374 40.9
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 7.1e-51 205.7 407 40.0
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 1.6e-50 204.5 247 47.4
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 4.6e-50 203.0 411 40.6
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 4.6e-50 203.0 230 50.0
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 6.0e-50 202.6 389 38.8
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 2.3e-49 200.7 404 41.1
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 8.7e-49 198.7 372 37.9
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 1.9e-48 197.6 228 49.1
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 4.3e-48 196.4 318 43.1
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 5.6e-48 196.1 411 40.4
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 9.6e-48 195.3 416 38.9
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 3.1e-46 190.3 263 44.1
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 4.5e-45 186.4 251 44.6
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 4.5e-45 186.4 251 44.6
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 2.9e-44 183.7 395 36.7
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 3.2e-43 180.3 415 36.4
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 6.7e-41 172.6 416 36.5
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 1.6e-39 167.9 236 44.5
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 4.0e-38 163.3 472 33.7
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 4.5e-37 159.8 237 41.8
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 7.6e-37 159.1 404 36.6
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 2.2e-36 157.5 399 34.1
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 6.5e-36 156.0 396 33.6
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 2.5e-35 154.1 229 43.7
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 3.5e-34 150.2 264 42.0
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 1.0e-33 148.7 401 36.7
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.0e-33 148.7 393 36.4
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 1.0e-33 148.7 188 43.1
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 2.3e-33 147.5 395 34.9
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 2.3e-25 120.9 262 37.0
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 5.3e-22 109.8 144 47.2
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 5.0e-20 103.2 275 38.9
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 2.3e-17 94.4 182 40.7
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 5.7e-16 89.7 137 41.6
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 2.8e-15 87.4 86 53.5
PRCOL_00000241 Prasinoderma coloniale HOM05D004981 ORTHO05D005635 8.2e-15 85.9 186 31.2
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 1.1e-14 85.5 242 32.6
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 9.1e-14 82.4 86 50.0
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 5.9e-13 79.7 105 40.0
Cre06.g299450 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 1.7e-07 61.6 155 34.2
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 2.2e-07 61.2 131 37.4
Cre04.g221350 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 2.8e-07 60.8 167 33.5
FAN17G2803 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.7e-07 60.5 128 33.6
BcaC05g24776 Brassica carinata HOM05D004981 ORTHO05D005635 1.4e-06 58.5 48 52.1
VMungo1383G0650 Vigna mungo HOM05D004981 ORTHO05D005635 7.0e-06 56.2 168 31.5


User provided reference genes

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