Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb309080 Zea mays HOM05D006190 ORTHO05D008260 1.1e-298 1029.2 526 100.0
Os09g0296400 Oryza sativa ssp. japonica HOM05D006190 ORTHO05D008260 1.8e-237 825.9 528 79.9
HPP92_020505 Vanilla planifolia HOM05D006190 ORTHO05D008260 2.0e-175 619.8 525 58.3
CSS0039152 Camellia sinensis var. sinensis HOM05D006190 ORTHO05D008260 1.2e-167 594.0 530 55.1
Rhsim06G0167400 Rhododendron simsii HOM05D006190 ORTHO05D008260 2.0e-167 593.2 523 56.6
Nn1g07299 Nelumbo nucifera HOM05D006190 ORTHO05D008260 2.4e-165 586.3 527 56.0
Actinidia09748 Actinidia chinensis HOM05D006190 ORTHO05D008260 1.2e-164 583.9 530 54.5
vmacro12161 Vaccinium macrocarpon HOM05D006190 ORTHO05D008260 1.2e-164 583.9 528 55.3
TWI36G1256 Tripterygium wilfordii HOM05D006190 ORTHO05D008260 1.6e-164 583.6 530 54.3
GSVIVG01030506001 Vitis vinifera HOM05D006190 ORTHO05D008260 4.5e-164 582.0 530 55.3
Rhsim04G0034400 Rhododendron simsii HOM05D006190 ORTHO05D008260 2.2e-163 579.7 526 54.8
Thecc.01G182400 Theobroma cacao HOM05D006190 ORTHO05D008260 2.9e-163 579.3 530 54.2
Dinv39750 Davidia involucrata HOM05D006190 ORTHO05D008260 6.5e-163 578.2 530 54.3
Lj1A781G46 Lonicera japonica HOM05D006190 ORTHO05D008260 6.5e-163 578.2 524 55.3
Gohir.D07G088600 Gossypium hirsutum HOM05D006190 ORTHO05D008260 8.5e-163 577.8 530 54.2
Gorai.001G095000 Gossypium raimondii HOM05D006190 ORTHO05D008260 1.1e-162 577.4 530 54.2
Gohir.A07G082100 Gossypium hirsutum HOM05D006190 ORTHO05D008260 2.5e-162 576.2 531 54.2
MBI19_g03678_MAGBIO Magnolia biondii HOM05D006190 ORTHO05D008260 6.1e-161 571.6 544 54.4
Manes.13G065900 Manihot esculenta HOM05D006190 ORTHO05D008260 6.1e-161 571.6 534 53.6
MD17G1106200 Malus domestica HOM05D006190 ORTHO05D008260 8.0e-161 571.2 532 54.1
Potri.002G224300 Populus trichocarpa HOM05D006190 ORTHO05D008260 8.0e-161 571.2 530 52.6
Sed0027843 Sechium edule HOM05D006190 ORTHO05D008260 1.4e-160 570.5 533 54.8
Cfa014317 Carpinus fangiana HOM05D006190 ORTHO05D008260 2.3e-160 569.7 533 54.6
Solyc05g042120.4 Solanum lycopersicum HOM05D006190 ORTHO05D008260 4.0e-160 568.9 525 53.7
Ciclev10017756m.g Citrus clementina HOM05D006190 ORTHO05D008260 6.8e-160 568.2 530 54.3
arahy.Tifrunner.gnm1.ann1.BBUS42 Arachis hypogaea HOM05D006190 ORTHO05D008260 8.8e-160 567.8 527 53.7
ClCG09G011200 Citrullus lanatus HOM05D006190 ORTHO05D008260 8.8e-160 567.8 532 55.1
Sopen05g026250 Solanum pennellii HOM05D006190 ORTHO05D008260 8.8e-160 567.8 526 53.6
Prupe.3G210000 Prunus persica HOM05D006190 ORTHO05D008260 5.7e-159 565.1 532 53.9
arahy.Tifrunner.gnm1.ann1.5R2QIE Arachis hypogaea HOM05D006190 ORTHO05D008260 9.8e-159 564.3 527 53.1
RcHm_v2.0_Chr2g0158021 Rosa chinensis HOM05D006190 ORTHO05D008260 1.4e-157 560.5 532 53.9
CsaV3_6G037760 Cucumis sativus L. HOM05D006190 ORTHO05D008260 2.4e-157 559.7 533 54.2
Peaxi162Scf00100g01525 Petunia axillaris HOM05D006190 ORTHO05D008260 2.4e-157 559.7 528 54.5
FAN02G1605 Fragaria x ananassa HOM05D006190 ORTHO05D008260 5.4e-157 558.5 533 53.5
FvH4_6g42100 Fragaria vesca HOM05D006190 ORTHO05D008260 9.1e-157 557.8 533 53.7
Phvul.006G013000 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 9.1e-157 557.8 533 51.8
Rhsim04G0027600 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.6e-156 557.0 524 54.4
Migut.F01671 Erythranthe guttata HOM05D006190 ORTHO05D008260 2.0e-156 556.6 533 53.1
FAN14G2650 Fragaria x ananassa HOM05D006190 ORTHO05D008260 2.0e-156 556.6 533 53.7
Atru.chr6.3259 Acer truncatum HOM05D006190 ORTHO05D008260 2.7e-156 556.2 532 52.6
PSO675G0778 Papaver somniferum HOM05D006190 ORTHO05D008260 3.5e-156 555.8 532 51.5
Phvul.011G111400 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 3.5e-156 555.8 533 52.0
Ca_16289_v3 Cicer arietinum L. HOM05D006190 ORTHO05D008260 7.7e-156 554.7 534 52.6
PGR083G2874 Punica granatum HOM05D006190 ORTHO05D008260 7.7e-156 554.7 530 52.8
Sabra02G0171700 Salix brachista HOM05D006190 ORTHO05D008260 7.7e-156 554.7 550 50.2
Aqoxy3G00055 Aquilegia oxysepala HOM05D006190 ORTHO05D008260 2.3e-155 553.1 529 51.2
Aa31LG5G5620 Aethionema arabicum HOM05D006190 ORTHO05D008260 3.8e-155 552.4 529 51.2
PSO541G5374 Papaver somniferum HOM05D006190 ORTHO05D008260 1.9e-154 550.1 532 50.9
MSTRG.8117 Avicennia marina HOM05D006190 ORTHO05D008260 7.2e-154 548.1 529 52.2
DCAR_019742 Daucus carota HOM05D006190 ORTHO05D008260 1.2e-153 547.4 533 52.2
BcaB02g10385 Brassica carinata HOM05D006190 ORTHO05D008260 2.1e-153 546.6 529 51.6
BcaC02g11229 Brassica carinata HOM05D006190 ORTHO05D008260 2.8e-153 546.2 531 51.6
Lalb_Chr04g0264321 Lupinus albus HOM05D006190 ORTHO05D008260 3.6e-153 545.8 526 51.7
Medtr3g080550 Medicago truncatula HOM05D006190 ORTHO05D008260 4.7e-153 545.4 533 52.2
Sc06g0009680 Simmondsia chinensis HOM05D006190 ORTHO05D008260 6.1e-153 545.0 534 51.5
SGA_v2.0_scaffold13G06447 Striga asiatica HOM05D006190 ORTHO05D008260 1.0e-152 544.3 532 51.7
Thhalv10016459m.g Eutrema salsugineum HOM05D006190 ORTHO05D008260 4.0e-152 542.3 530 50.9
THA.LOC104800883 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 4.0e-152 542.3 532 50.6
Carub.0004s1265 Capsella rubella HOM05D006190 ORTHO05D008260 5.2e-152 542.0 530 50.8
HanXRQChr03g0075981 Helianthus annuus HOM05D006190 ORTHO05D008260 8.9e-152 541.2 530 51.5
MD09G1114700 Malus domestica HOM05D006190 ORTHO05D008260 1.2e-151 540.8 572 49.8
THA.LOC104798591 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 2.0e-151 540.0 538 50.2
Sp4g13810 Schrenkiella parvula HOM05D006190 ORTHO05D008260 2.6e-151 539.7 534 50.9
AL4G26570 Arabidopsis lyrata HOM05D006190 ORTHO05D008260 3.4e-151 539.3 530 50.2
EL10Ac8g20037 Beta vulgaris HOM05D006190 ORTHO05D008260 1.3e-150 537.3 535 49.5
Glyma.20G058400 Glycine max HOM05D006190 ORTHO05D008260 3.7e-150 535.8 531 50.7
Hund00609 Selenicereus undatus HOM05D006190 ORTHO05D008260 1.1e-149 534.3 560 50.0
Nitab4.5_0006063g0030 Nicotiana tabacum HOM05D006190 ORTHO05D008260 3.2e-149 532.7 533 51.2
AT2G31340 Arabidopsis thaliana HOM05D006190 ORTHO05D008260 4.1e-149 532.3 528 49.8
FAN05G0691 Fragaria x ananassa HOM05D006190 ORTHO05D008260 5.4e-149 531.9 584 48.6
Lj6g0020329 Lotus japonicus HOM05D006190 ORTHO05D008260 4.6e-148 528.9 531 50.8
ECA240G2645 Erigeron canadensis HOM05D006190 ORTHO05D008260 8.0e-145 518.1 526 50.2
Nitab4.5_0000019g0350 Nicotiana tabacum HOM05D006190 ORTHO05D008260 1.0e-144 517.7 526 50.6
ATR0736G101 Amborella trichopoda HOM05D006190 ORTHO05D008260 4.4e-143 512.3 541 50.6
Haze_12765 Corylus avellana HOM05D006190 ORTHO05D008260 6.6e-139 498.4 527 51.0
Lsat_1_v5_gn_9_105860 Lactuca sativa HOM05D006190 ORTHO05D008260 6.6e-139 498.4 506 48.8
Eucgr.K00752 Eucalyptus grandis HOM05D006190 ORTHO05D008260 5.6e-138 495.4 425 57.6
COL.COLO4_21885 Corchorus olitorius HOM05D006190 ORTHO05D008260 1.6e-137 493.8 425 57.4
Eucgr.A01784 Eucalyptus grandis HOM05D006190 ORTHO05D008260 3.4e-135 486.1 527 48.8
CiPaw.03G155000 Carya illinoinensis HOM05D006190 ORTHO05D008260 1.9e-133 480.3 425 55.5
MELO3C014435.2 Cucumis melo HOM05D006190 ORTHO05D008260 1.8e-128 463.8 532 48.9
Rhsim04G0033900 Rhododendron simsii HOM05D006190 ORTHO05D008260 2.6e-127 459.9 478 50.0
unitig_46.g18456 Utricularia gibba HOM05D006190 ORTHO05D008260 4.3e-122 442.6 559 43.8
AUR62006846 Chenopodium quinoa HOM05D006190 ORTHO05D008260 5.3e-112 409.1 532 42.3
QL08p030638 Quercus lobata HOM05D006190 ORTHO05D008260 2.6e-111 406.8 496 45.2
AUR62000500 Chenopodium quinoa HOM05D006190 ORTHO05D008260 2.2e-110 403.7 532 41.7
Cpa.g.sc132.24 Carica papaya HOM05D006190 ORTHO05D008260 2.9e-110 403.3 682 36.5
Ah.06g190910 Amaranthus hybridus HOM05D006190 ORTHO05D008260 6.0e-108 395.6 530 41.7
CDE07G0814 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 7.6e-103 378.6 266 64.7
TPR.G342 Trifolium pratense HOM05D006190 ORTHO05D008260 1.7e-102 377.5 408 47.3
Mapoly0014s0084 Marchantia polymorpha HOM05D006190 ORTHO05D008260 3.3e-98 363.2 560 38.2
Pp3c23_22000 Physcomitrium patens HOM05D006190 ORTHO05D008260 2.1e-97 360.5 560 39.1
Psat5g111200 Pisum sativum HOM05D006190 ORTHO05D008260 3.7e-97 359.8 265 62.6
Lsat_1_v5_gn_2_93981 Lactuca sativa HOM05D006190 ORTHO05D008260 3.8e-94 349.7 482 40.9
Aa31sc34G90 Aethionema arabicum HOM05D006190 ORTHO05D008260 1.7e-86 324.3 242 60.3
TAR020G0003 Trochodendron aralioides HOM05D006190 ORTHO05D008260 7.2e-77 292.4 315 48.3
Oeu015050.1 Olea europaea HOM05D006190 ORTHO05D008260 6.9e-72 275.8 318 45.3
SHI10054 Sapria himalayana HOM05D006190 ORTHO05D000001 1.5e-71 274.6 342 42.4
A05p14270 Brassica napus HOM05D006190 ORTHO05D008260 2.1e-68 264.2 319 43.6
VMungo1127G1525 Vigna mungo HOM05D006190 ORTHO05D008260 3.6e-68 263.5 737 28.4
SEGI_33791 Sequoiadendron giganteum HOM05D006190 ORTHO05D008260 1.0e-62 245.4 212 56.1
SHI10056 Sapria himalayana HOM05D006190 ORTHO05D008260 1.1e-53 215.3 209 48.8
Psat5g111240 Pisum sativum HOM05D006190 ORTHO05D008260 2.5e-53 214.2 276 43.8
CBR_g25881 Chara braunii HOM05D006190 ORTHO05D008260 1.6e-52 211.5 495 31.3
TPR.G18389 Trifolium pratense HOM05D006190 ORTHO05D008260 2.3e-51 207.6 169 59.8
CAN.G795.2 Capsicum annuum HOM05D006190 ORTHO05D008260 5.7e-50 203.0 261 44.1
FAN18G3300 Fragaria x ananassa HOM05D006190 ORTHO05D008260 7.2e-45 186.0 268 42.2
CARHR124960 Cardamine hirsuta HOM05D006190 ORTHO05D008260 9.5e-45 185.7 267 40.1
Oeu015049.1 Olea europaea HOM05D006190 ORTHO05D008260 6.3e-41 172.9 119 68.9
TPR.G36458 Trifolium pratense HOM05D006190 ORTHO05D008260 5.9e-39 166.4 185 48.1
Sabra14G0120600 Salix brachista HOM05D006190 ORTHO05D008260 8.0e-36 156.0 179 45.8
BcaC01g05972 Brassica carinata HOM05D006190 ORTHO05D008260 4.1e-32 143.7 169 46.2
Sopen11g022430 Solanum pennellii HOM05D006190 ORTHO05D008260 9.2e-24 115.9 211 36.0
Lsat_1_v5_gn_5_72540 Lactuca sativa HOM05D006190 ORTHO05D008260 1.2e-23 115.5 88 59.1
C04p19010 Brassica napus HOM05D006190 ORTHO05D008260 6.0e-23 113.2 139 39.6
THA.LOC104822845 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 3.0e-22 110.9 144 38.9
C03p20570 Brassica napus HOM05D006190 ORTHO05D008260 1.3e-17 95.5 148 39.2
FAN10G3459 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.2e-15 89.0 148 38.5
QL08p030629 Quercus lobata HOM05D006190 ORTHO05D027094 1.1e-13 82.4 48 79.2
Hund15364 Selenicereus undatus HOM05D006190 ORTHO05D027094 3.6e-12 77.4 48 68.8
BcaC02g11231 Brassica carinata HOM05D006190 ORTHO05D027094 1.9e-08 65.1 44 63.6


User provided reference genes

Program Settings