Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 1.2e-124 449.9 230 100.0
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.4e-109 399.1 230 88.7
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 1.3e-86 323.6 207 79.2
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 3.8e-83 312.0 221 72.4
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 1.5e-82 310.1 223 73.1
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 1.9e-82 309.7 217 72.8
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 3.2e-82 308.9 217 73.3
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 1.6e-81 306.6 223 70.9
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 1.6e-81 306.6 227 69.2
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 2.1e-81 306.2 219 71.7
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 2.7e-81 305.8 219 70.3
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 3.6e-81 305.4 229 71.2
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 3.6e-81 305.4 219 72.6
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 4.7e-81 305.1 202 75.7
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 4.7e-81 305.1 217 71.4
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 4.7e-81 305.1 229 69.0
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 6.1e-81 304.7 219 71.7
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 6.1e-81 304.7 221 71.5
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 1.0e-80 303.9 220 71.4
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.0e-80 303.9 221 71.0
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.4e-80 303.5 219 69.4
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 1.8e-80 303.1 220 71.8
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 2.3e-80 302.8 220 70.9
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 3.0e-80 302.4 221 71.0
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 3.0e-80 302.4 218 67.9
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 4.0e-80 302.0 220 70.5
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 4.0e-80 302.0 228 67.1
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 4.0e-80 302.0 217 67.3
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 6.7e-80 301.2 223 68.2
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 6.7e-80 301.2 219 69.9
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 8.8e-80 300.8 220 70.5
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 8.8e-80 300.8 221 70.6
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 8.8e-80 300.8 217 72.4
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 8.8e-80 300.8 219 70.8
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 1.2e-79 300.4 219 71.2
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 1.5e-79 300.1 223 70.0
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 1.5e-79 300.1 220 70.0
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.5e-79 300.1 219 70.3
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.6e-79 299.3 219 70.3
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 2.6e-79 299.3 219 70.3
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 3.3e-79 298.9 219 70.3
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 4.4e-79 298.5 220 69.1
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 4.4e-79 298.5 220 69.1
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 4.4e-79 298.5 219 70.8
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 4.4e-79 298.5 222 66.7
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 4.4e-79 298.5 217 68.7
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 5.7e-79 298.1 228 67.1
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 5.7e-79 298.1 219 69.9
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.7e-79 298.1 219 70.3
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 7.5e-79 297.7 221 70.6
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 7.5e-79 297.7 221 70.6
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 7.5e-79 297.7 217 69.1
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 9.7e-79 297.4 219 70.3
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 9.7e-79 297.4 216 69.0
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 2.2e-78 296.2 217 70.0
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 2.2e-78 296.2 217 70.0
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 2.2e-78 296.2 219 69.4
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 2.8e-78 295.8 221 70.6
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.8e-78 295.8 218 68.3
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 2.8e-78 295.8 221 67.4
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 4.8e-78 295.0 221 70.1
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 4.8e-78 295.0 221 70.1
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 4.8e-78 295.0 221 70.1
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 4.8e-78 295.0 217 69.1
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 4.8e-78 295.0 227 67.4
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 4.8e-78 295.0 219 67.6
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 4.8e-78 295.0 216 69.0
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 6.3e-78 294.7 237 66.2
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 1.4e-77 293.5 222 68.9
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 1.4e-77 293.5 222 68.9
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.4e-77 293.5 217 69.6
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 1.4e-77 293.5 216 68.1
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 1.4e-77 293.5 219 67.1
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.4e-77 293.5 219 68.5
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 3.1e-77 292.4 219 67.6
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 3.1e-77 292.4 219 67.6
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 3.1e-77 292.4 219 67.1
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 4.1e-77 292.0 223 68.2
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 4.1e-77 292.0 219 67.1
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 5.3e-77 291.6 217 69.1
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 5.3e-77 291.6 218 67.4
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 9.1e-77 290.8 218 67.4
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 9.1e-77 290.8 218 68.3
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 9.1e-77 290.8 218 67.9
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 1.6e-76 290.0 216 69.9
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 1.6e-76 290.0 219 69.9
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 2.0e-76 289.7 219 68.0
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 2.7e-76 289.3 227 63.9
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 2.7e-76 289.3 220 65.9
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.5e-76 288.9 217 68.2
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.5e-76 288.9 217 68.2
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 4.5e-76 288.5 225 64.4
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 4.5e-76 288.5 219 67.6
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.9e-76 288.1 219 67.6
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 1.0e-75 287.3 219 66.7
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 1.3e-75 287.0 220 66.8
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.7e-75 286.6 222 66.7
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 1.7e-75 286.6 220 66.8
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 2.2e-75 286.2 211 68.2
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 3.8e-75 285.4 211 66.8
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 5.0e-75 285.0 220 66.4
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 2.5e-74 282.7 218 66.5
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 2.5e-74 282.7 216 68.5
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 5.5e-74 281.6 218 66.5
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 9.4e-74 280.8 216 67.6
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 1.6e-73 280.0 228 63.6
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.6e-73 280.0 219 66.7
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.6e-73 280.0 229 62.9
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 1.6e-73 280.0 229 62.9
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 2.7e-73 279.3 208 67.8
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 2.7e-73 279.3 218 66.1
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 2.7e-73 279.3 218 67.9
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 3.6e-73 278.9 229 62.9
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 8.0e-73 277.7 219 66.2
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.0e-72 277.3 240 62.1
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 1.4e-72 276.9 231 62.3
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 8.8e-72 274.2 222 63.1
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 4.4e-71 271.9 218 65.1
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 4.1e-69 265.4 220 62.7
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 4.1e-69 265.4 282 53.9
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 9.1e-69 264.2 217 64.1
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 2.0e-68 263.1 177 73.4
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.0e-68 263.1 219 63.0
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 3.8e-67 258.8 174 75.3
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 1.2e-65 253.8 177 74.6
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 4.4e-63 245.4 169 74.6
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 6.3e-62 241.5 190 67.4
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.9e-59 232.6 166 72.3
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 5.6e-58 228.4 185 63.8
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 5.6e-58 228.4 185 63.8
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 1.0e-56 224.2 186 64.5
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 7.5e-55 218.0 194 61.9
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.2e-54 216.5 190 63.2
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 7.0e-53 211.5 196 60.7
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 9.2e-53 211.1 319 41.4
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 1.6e-52 210.3 203 55.7
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.6e-52 210.3 173 65.9
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.3e-51 207.2 160 68.8
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 2.3e-51 206.5 186 59.1
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 7.3e-50 201.4 178 61.2
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 2.1e-49 199.9 186 55.4
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 4.0e-48 195.7 152 65.1
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 3.4e-47 192.6 152 64.5
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.2e-46 189.9 150 66.0
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 3.5e-44 182.6 154 62.3
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 4.3e-42 175.6 154 59.7
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.4e-37 160.6 229 43.2
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 3.0e-27 126.3 242 36.0
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.3e-22 110.9 68 76.5
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 4.9e-22 109.0 212 34.9
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 1.1e-21 107.8 68 75.0
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 6.6e-19 98.6 208 35.1
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 2.1e-17 93.6 235 30.6
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.6e-12 77.4 198 30.8
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 2.5e-10 70.1 201 29.9
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 8.1e-09 65.1 69 50.7
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 1.1e-08 64.7 41 68.3
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.7e-06 57.4 41 61.0


User provided reference genes

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