Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb308100 Zea mays HOM05D009009 ORTHO05D010828 1.4e-280 969.1 544 100.0
Zm00001eb176540 Zea mays HOM05D009009 ORTHO05D010828 1.5e-154 550.4 547 55.6
Zm00001eb276390 Zea mays HOM05D009009 ORTHO05D010828 4.4e-154 548.9 547 55.4
Zm00001eb019990 Zea mays HOM05D009009 ORTHO05D010828 7.3e-133 478.4 547 51.2
Zm00001eb278490 Zea mays HOM05D009009 ORTHO05D010828 3.3e-125 453.0 335 68.4
Zm00001eb384030 Zea mays HOM05D009009 ORTHO05D016371 3.9e-102 376.3 545 41.8
Zm00001eb112140 Zea mays HOM05D009009 ORTHO05D010828 6.9e-83 312.4 240 88.8
Os06g0271400 Oryza sativa ssp. japonica HOM05D009009 ORTHO05D010828 4.5e-58 229.9 348 41.4
Zm00001eb341730 Zea mays HOM05D009009 ORTHO05D010828 5.5e-56 223.0 284 47.2
Os02g0583500 Oryza sativa ssp. japonica HOM05D009009 ORTHO05D010828 1.8e-51 208.0 335 38.2
Os11g0519100 Oryza sativa ssp. japonica HOM05D009009 ORTHO05D010828 3.1e-51 207.2 336 38.1
Os02g0241300 Oryza sativa ssp. japonica HOM05D009009 ORTHO05D010828 5.0e-49 199.9 333 39.0
Os04g0519100 Oryza sativa ssp. japonica HOM05D009009 ORTHO05D010828 4.9e-44 183.3 215 40.9
Zm00001eb417100 Zea mays HOM05D009009 ORTHO05D010828 2.4e-43 181.0 151 53.0
Zm00001eb423000 Zea mays HOM05D009296 ORTHO05D010828 2.3e-41 174.5 348 31.6
Os06g0240600 Oryza sativa ssp. japonica HOM05D009009 ORTHO05D010828 8.6e-41 172.6 187 43.9
Zm00001eb029830 Zea mays HOM05D009296 ORTHO05D010828 6.6e-33 146.4 347 28.8
Zm00001eb176390 Zea mays HOM05D009296 ORTHO05D010828 1.1e-32 145.6 245 33.9
Zm00001eb354130 Zea mays HOM05D009296 ORTHO05D010828 2.3e-30 137.9 232 34.5
Os04g0228600 Oryza sativa ssp. japonica HOM05D009009 ORTHO05D010828 1.9e-27 128.3 151 42.4
Zm00001eb024660 Zea mays HOM05D009009 ORTHO05D010828 3.6e-23 114.0 70 88.6
Zm00001eb385530 Zea mays HOM05D009296 ORTHO05D010828 4.7e-23 113.6 148 35.8
Dinv13764 Davidia involucrata HOM05D011313 ORTHO05D013316 2.3e-22 111.3 344 25.3
COL.COLO4_16289 Corchorus olitorius HOM05D059948 ORTHO05D010661 8.9e-22 109.4 276 27.5
Zm00001eb308370 Zea mays HOM05D009009 ORTHO05D016371 1.2e-21 109.0 220 31.4
PGSC0003DMG400001138 Solanum tuberosum HOM05D008892 ORTHO05D010661 4.4e-21 107.1 156 37.2
COL.COLO4_19832 Corchorus olitorius HOM05D015286 ORTHO05D000669 5.8e-21 106.7 261 28.7
Zm00001eb084650 Zea mays HOM05D009296 ORTHO05D010828 9.8e-21 105.9 160 35.0
Zm00001eb266790 Zea mays HOM05D009009 ORTHO05D010828 1.9e-19 101.7 79 58.2
Zm00001eb006240 Zea mays HOM05D009296 ORTHO05D010828 2.4e-19 101.3 186 32.8
Zm00001eb136420 Zea mays HOM05D009009 ORTHO05D010828 6.2e-15 86.7 131 43.5
RcHm_v2.0_Chr3g0486961 Rosa chinensis HOM05D008705 ORTHO05D000669 4.0e-14 84.0 336 24.1
Zm00001eb380570 Zea mays HOM05D009009 ORTHO05D010828 7.6e-13 79.7 113 44.2
Os11g0451051 Oryza sativa ssp. japonica HOM05D009009 ORTHO05D010828 1.7e-12 78.6 65 53.8
SGA_v2.0_scaffold752G53551 Striga asiatica HOM05D025956 ORTHO05D000669 1.2e-10 72.4 331 23.0
Nitab4.5_0000111g0060 Nicotiana tabacum HOM05D008455 ORTHO05D009597 1.6e-10 72.0 147 30.6
MBI16_g34343_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.1e-10 71.6 254 26.4
MBI17_g07057_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.5e-10 70.9 288 24.3
Nitab4.5_0001261g0020 Nicotiana tabacum HOM05D009290 ORTHO05D009597 6.0e-10 70.1 163 29.4
MBI02_g29975_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 7.8e-10 69.7 303 25.1
Nitab4.5_0007164g0020 Nicotiana tabacum HOM05D009290 ORTHO05D009597 3.0e-09 67.8 149 29.5
MBI15_g13723_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 8.6e-09 66.2 212 27.4
COL.COLO4_29630 Corchorus olitorius HOM05D015286 ORTHO05D010661 1.5e-08 65.5 296 23.6
MBI15_g15098_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.5e-08 65.5 295 24.1
Zm00001eb191320 Zea mays HOM05D009009 ORTHO05D011590 1.5e-08 65.5 68 48.5
Phvul.002G246000 Phaseolus vulgaris HOM05D008291 ORTHO05D003568 3.3e-08 64.3 213 23.9
Zm00001eb341640 Zea mays HOM05D009009 ORTHO05D010828 3.3e-08 64.3 85 43.5
MBI14_g25533_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.6e-08 63.5 278 23.0
Zm00001eb270500 Zea mays HOM05D009009 ORTHO05D011590 7.3e-08 63.2 68 47.1
Dinv06183 Davidia involucrata HOM05D011313 ORTHO05D013316 9.6e-08 62.8 117 27.4
Nitab4.5_0014285g0010 Nicotiana tabacum HOM05D009290 ORTHO05D009597 9.6e-08 62.8 198 25.3
Zm00001eb176240 Zea mays HOM05D009009 ORTHO05D016371 9.6e-08 62.8 81 43.2
Zm00001eb417210 Zea mays HOM05D009009 ORTHO05D016371 9.6e-08 62.8 81 43.2
MBI12_g43234_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.2e-07 62.4 306 23.5
MBI16_g20833_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.2e-07 62.4 232 25.9
CAN.G211.14 Capsicum annuum HOM05D000304 ORTHO05D010661 2.1e-07 61.6 212 24.5
Zm00001eb341210 Zea mays HOM05D009009 ORTHO05D016371 2.8e-07 61.2 81 42.0
Zm00001eb380970 Zea mays HOM05D009009 ORTHO05D016371 2.8e-07 61.2 81 42.0
MBI16_g11620_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.7e-07 60.5 185 25.9
VMungo0251G2604 Vigna mungo HOM05D008291 ORTHO05D003568 6.2e-07 60.1 364 21.4
MBI17_g17142_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.1e-06 59.3 277 23.8
Zm00001eb132710 Zea mays HOM05D009009 ORTHO05D016371 1.1e-06 59.3 81 42.0
MBI11_g21812_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.4e-06 58.9 178 26.4
PGSC0003DMG400019084 Solanum tuberosum HOM05D008892 ORTHO05D010661 1.4e-06 58.9 210 23.8
MBI13_g12520_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.8e-06 58.5 311 23.8
Sed0000006 Sechium edule HOM05D000791 ORTHO05D001863 1.8e-06 58.5 330 23.6
Nitab4.5_0017029g0010 Nicotiana tabacum HOM05D008455 ORTHO05D009597 2.4e-06 58.2 149 26.2
MBI16_g34285_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.1e-06 57.8 249 22.5
MBI14_g38741_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.0e-06 57.4 168 26.8
MBI15_g00064_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.0e-06 57.4 166 25.3
MBI09_g45689_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.2e-06 57.0 141 29.1
Zm00001eb090030 Zea mays HOM05D009009 ORTHO05D016371 5.2e-06 57.0 66 45.5
MBI03_g21542_MAGBIO Magnolia biondii HOM05D003464 ORTHO05D003170 8.9e-06 56.2 169 27.2
PGSC0003DMG400006732 Solanum tuberosum HOM05D008892 ORTHO05D013316 8.9e-06 56.2 131 27.5


User provided reference genes

Program Settings