Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb308090 Zea mays HOM05D000709 ORTHO05D021077 3.8e-72 274.6 130 100.0
Zm00001eb280480 Zea mays HOM05D000709 ORTHO05D002401 3.0e-40 168.7 100 83.0
Zm00001eb280490 Zea mays HOM05D000709 ORTHO05D002401 1.3e-35 153.3 91 85.7
Os06g0267500 Oryza sativa ssp. japonica HOM05D000709 ORTHO05D002401 3.3e-23 112.1 102 60.8
MBI12_g21978_MAGBIO Magnolia biondii HOM05D000709 ORTHO05D002401 1.3e-19 100.1 114 52.6
Zm00001eb164470 Zea mays HOM05D000511 ORTHO05D000413 1.6e-17 93.2 48 87.5
Manes.14G097400 Manihot esculenta HOM05D000709 ORTHO05D002401 4.8e-14 81.6 75 57.3
BcaB03g14052 Brassica carinata HOM05D000709 ORTHO05D002401 1.1e-13 80.5 100 44.0
TAR374G1466 Trochodendron aralioides HOM05D000709 ORTHO05D002401 1.1e-13 80.5 100 50.0
Manes.06G072300 Manihot esculenta HOM05D000709 ORTHO05D002401 1.4e-13 80.1 75 57.3
COL.COLO4_07867 Corchorus olitorius HOM05D000709 ORTHO05D002401 1.8e-13 79.7 101 49.5
FAN07G0271 Fragaria x ananassa HOM05D000709 ORTHO05D002401 1.8e-13 79.7 102 45.1
FvH4_4g28090 Fragaria vesca HOM05D000709 ORTHO05D002401 2.4e-13 79.3 75 54.7
FAN12G0115 Fragaria x ananassa HOM05D000709 ORTHO05D002401 2.4e-13 79.3 75 54.7
FAN17G2510 Fragaria x ananassa HOM05D000709 ORTHO05D002401 3.1e-13 79.0 75 54.7
Gohir.D12G173700 Gossypium hirsutum HOM05D000709 ORTHO05D002401 4.0e-13 78.6 101 51.5
Gorai.008G186300 Gossypium raimondii HOM05D000709 ORTHO05D002401 4.0e-13 78.6 101 51.5
Sabra08G0088400 Salix brachista HOM05D000709 ORTHO05D002401 5.3e-13 78.2 76 56.6
Duzib248G0470 Durio zibethinus HOM05D000709 ORTHO05D002401 6.9e-13 77.8 103 49.5
RcHm_v2.0_Chr4g0435841 Rosa chinensis HOM05D000709 ORTHO05D002401 6.9e-13 77.8 76 55.3
Nn4g23724 Nelumbo nucifera HOM05D000709 ORTHO05D002401 9.0e-13 77.4 100 48.0
Thecc.02G361300 Theobroma cacao HOM05D000709 ORTHO05D002401 9.0e-13 77.4 103 48.5
TAR622G0092 Trochodendron aralioides HOM05D000709 ORTHO05D002401 1.2e-12 77.0 100 49.0
FAN22G1336 Fragaria x ananassa HOM05D000709 ORTHO05D002401 1.5e-12 76.6 75 53.3
TAR371G0746 Trochodendron aralioides HOM05D000709 ORTHO05D002401 1.5e-12 76.6 73 53.4
Gohir.A12G170500 Gossypium hirsutum HOM05D000709 ORTHO05D002401 2.0e-12 76.3 101 50.5
Nn3g17722 Nelumbo nucifera HOM05D000709 ORTHO05D002401 2.0e-12 76.3 100 46.0
AT1G25580 Arabidopsis thaliana HOM05D000709 ORTHO05D002401 2.6e-12 75.9 75 49.3
CARHR025860 Cardamine hirsuta HOM05D000709 ORTHO05D002401 2.6e-12 75.9 103 44.7
CDE11G0625 Ceratophyllum demersum HOM05D000709 ORTHO05D021077 4.4e-12 75.1 76 55.3
Actinidia38391 Actinidia chinensis HOM05D000709 ORTHO05D002401 5.8e-12 74.7 75 54.7
Nitab4.5_0004122g0040 Nicotiana tabacum HOM05D000709 ORTHO05D002401 5.8e-12 74.7 75 50.7
Peaxi162Scf00380g00219 Petunia axillaris HOM05D000709 ORTHO05D002401 5.8e-12 74.7 75 52.0
Actinidia13674 Actinidia chinensis HOM05D000709 ORTHO05D002401 7.6e-12 74.3 75 53.3
BolC5t31215H Brassica oleracea HOM05D000709 ORTHO05D002401 9.9e-12 73.9 112 40.2
A09p39660 Brassica napus HOM05D000709 ORTHO05D002401 1.7e-11 73.2 101 41.6
BraA09t39462Z Brassica rapa HOM05D000709 ORTHO05D002401 1.7e-11 73.2 101 41.6
CSS0012182 Camellia sinensis var. sinensis HOM05D000709 ORTHO05D002401 1.7e-11 73.2 75 53.3
CSS0041233 Camellia sinensis var. sinensis HOM05D000709 ORTHO05D002401 1.7e-11 73.2 75 53.3
GSVIVG01011954001 Vitis vinifera HOM05D000709 ORTHO05D002401 1.7e-11 73.2 78 53.8
Cc11_g10610 Coffea canephora HOM05D000709 ORTHO05D002401 2.2e-11 72.8 76 56.6
Actinidia16618 Actinidia chinensis HOM05D000709 ORTHO05D002401 2.9e-11 72.4 75 54.7
Duzib251G0863 Durio zibethinus HOM05D000709 ORTHO05D002401 3.8e-11 72.0 103 47.6
HanXRQChr17g0552261 Helianthus annuus HOM05D000709 ORTHO05D002401 4.9e-11 71.6 75 56.0
PGR119G0617 Punica granatum HOM05D000709 ORTHO05D002401 4.9e-11 71.6 79 53.2
Potri.008G116600 Populus trichocarpa HOM05D000709 ORTHO05D002401 6.4e-11 71.2 75 57.3
CAN.G184.90 Capsicum annuum HOM05D000709 ORTHO05D002401 8.4e-11 70.9 76 51.3
AUR62002922 Chenopodium quinoa HOM05D000709 ORTHO05D002401 8.4e-11 70.9 75 50.7
Dinv21134 Davidia involucrata HOM05D000709 ORTHO05D002401 8.4e-11 70.9 78 55.1
Lsat_1_v5_gn_3_57981 Lactuca sativa HOM05D000709 ORTHO05D002401 8.4e-11 70.9 75 53.3
Sc04g0006690 Simmondsia chinensis HOM05D000709 ORTHO05D002401 8.4e-11 70.9 86 48.8
Sc04g0006730 Simmondsia chinensis HOM05D000709 ORTHO05D002401 8.4e-11 70.9 86 48.8
TAR629G1111 Trochodendron aralioides HOM05D000709 ORTHO05D002401 8.4e-11 70.9 71 50.7
Atru.chr11.1354 Acer truncatum HOM05D000709 ORTHO05D002401 1.1e-10 70.5 76 55.3
C05p24860 Brassica napus HOM05D000709 ORTHO05D002401 1.1e-10 70.5 112 39.3
CSS0016712 Camellia sinensis var. sinensis HOM05D000709 ORTHO05D002401 1.1e-10 70.5 75 52.0
CSS0037976 Camellia sinensis var. sinensis HOM05D000709 ORTHO05D002401 1.1e-10 70.5 75 52.0
Carub.0001s2490 Capsella rubella HOM05D000709 ORTHO05D002401 1.1e-10 70.5 77 48.1
Sp1g22630 Schrenkiella parvula HOM05D000709 ORTHO05D002401 1.1e-10 70.5 77 48.1
TWI31G0592 Tripterygium wilfordii HOM05D000709 ORTHO05D002401 1.1e-10 70.5 77 51.9
BcaC05g26650 Brassica carinata HOM05D000709 ORTHO05D002401 1.4e-10 70.1 101 40.6
Cpa.g.sc53.116 Carica papaya HOM05D000709 ORTHO05D002401 1.4e-10 70.1 76 55.3
CiPaw.15G003500 Carya illinoinensis HOM05D000709 ORTHO05D002401 1.4e-10 70.1 117 40.2
Dinv16506 Davidia involucrata HOM05D000709 ORTHO05D002401 1.4e-10 70.1 76 53.9
Haze_17441 Corylus avellana HOM05D000709 ORTHO05D002401 1.9e-10 69.7 76 53.9
ECA246G2234 Erigeron canadensis HOM05D000709 ORTHO05D002401 1.9e-10 69.7 76 55.3
Oeu042026.1 Olea europaea HOM05D000709 ORTHO05D002401 1.9e-10 69.7 82 47.6
PGSC0003DMG400000809 Solanum tuberosum HOM05D000709 ORTHO05D002401 1.9e-10 69.7 76 50.0
AL1G39720 Arabidopsis lyrata HOM05D000709 ORTHO05D002401 2.4e-10 69.3 77 48.1
ClCG05G023020 Citrullus lanatus HOM05D000709 ORTHO05D002401 2.4e-10 69.3 103 41.7
THA.LOC104801756 Tarenaya hassleriana HOM05D000709 ORTHO05D002401 2.4e-10 69.3 75 50.7
unitig_22.g5565 Utricularia gibba HOM05D000709 ORTHO05D002401 2.4e-10 69.3 80 47.5
Ah.03g137940 Amaranthus hybridus HOM05D000709 ORTHO05D002401 3.2e-10 68.9 75 50.7
Solyc05g009840.3 Solanum lycopersicum HOM05D000709 ORTHO05D002401 3.2e-10 68.9 76 48.7
Sopen05g005650 Solanum pennellii HOM05D000709 ORTHO05D002401 3.2e-10 68.9 76 48.7
THA.LOC104821963 Tarenaya hassleriana HOM05D000709 ORTHO05D002401 3.2e-10 68.9 79 46.8
Ciclev10031598m.g Citrus clementina HOM05D000709 ORTHO05D002401 4.2e-10 68.6 125 38.4
CsaV3_5G033980 Cucumis sativus L. HOM05D000709 ORTHO05D002401 4.2e-10 68.6 117 38.5
Rhsim09G0112100 Rhododendron simsii HOM05D000709 ORTHO05D002401 4.2e-10 68.6 100 45.0
vmacro01365 Vaccinium macrocarpon HOM05D000709 ORTHO05D002401 4.2e-10 68.6 112 38.4
Oeu041879.2 Olea europaea HOM05D000709 ORTHO05D002401 5.4e-10 68.2 76 52.6
Aa31LG7G8920 Aethionema arabicum HOM05D005369 ORTHO05D006955 7.1e-10 67.8 75 45.3
EL10Ac6g14495 Beta vulgaris HOM05D000709 ORTHO05D002401 7.1e-10 67.8 79 49.4
Nitab4.5_0011178g0010 Nicotiana tabacum HOM05D000709 ORTHO05D002401 7.1e-10 67.8 82 46.3
Potri.010G129700 Populus trichocarpa HOM05D000709 ORTHO05D002401 7.1e-10 67.8 75 56.0
Hund25104 Selenicereus undatus HOM05D000709 ORTHO05D002401 7.1e-10 67.8 101 40.6
AUR62035283 Chenopodium quinoa HOM05D000709 ORTHO05D002401 9.3e-10 67.4 75 48.0
DCAR_023688 Daucus carota HOM05D000709 ORTHO05D002401 9.3e-10 67.4 76 44.7
Thhalv10007551m.g Eutrema salsugineum HOM05D000709 ORTHO05D002401 9.3e-10 67.4 80 47.5
Sabra10G0098700 Salix brachista HOM05D000709 ORTHO05D002401 9.3e-10 67.4 75 54.7
Sed0013338 Sechium edule HOM05D000709 ORTHO05D002401 9.3e-10 67.4 103 41.7
MD16G1048300 Malus domestica HOM05D000709 ORTHO05D002401 1.2e-09 67.0 77 50.6
MSTRG.7689 Avicennia marina HOM05D000709 ORTHO05D002401 2.1e-09 66.2 83 48.2
CANSAT64G0846 Cannabis sativa HOM05D000709 ORTHO05D002401 2.1e-09 66.2 78 48.7
Medtr5g053430 Medicago truncatula HOM05D000709 ORTHO05D002401 2.1e-09 66.2 78 47.4
MELO3C012215.2 Cucumis melo HOM05D000709 ORTHO05D002401 2.7e-09 65.9 103 40.8
Glyma.01G088200 Glycine max HOM05D000709 ORTHO05D002401 2.7e-09 65.9 75 49.3
Hma1.2p1_0406F.1_g146040 Hydrangea macrophylla HOM05D000709 ORTHO05D002401 2.7e-09 65.9 76 52.6
vmacro10529 Vaccinium macrocarpon HOM05D000709 ORTHO05D002401 4.6e-09 65.1 75 52.0
Prupe.1G305300 Prunus persica HOM05D000709 ORTHO05D002401 6.0e-09 64.7 77 50.6
MD13G1046600 Malus domestica HOM05D000709 ORTHO05D002401 7.8e-09 64.3 76 48.7
Sed0020682 Sechium edule HOM05D000709 ORTHO05D002401 7.8e-09 64.3 102 39.2
QL01p045366 Quercus lobata HOM05D000709 ORTHO05D002401 1.0e-08 63.9 123 38.2
Hund05768 Selenicereus undatus HOM05D000709 ORTHO05D002401 1.0e-08 63.9 72 45.8
Zm00001eb081760 Zea mays HOM05D000511 ORTHO05D000413 1.0e-08 63.9 46 65.2
Lj3A1020T58 Lonicera japonica HOM05D000709 ORTHO05D002401 1.7e-08 63.2 76 47.4
Rhsim12G0081600 Rhododendron simsii HOM05D000709 ORTHO05D002401 1.7e-08 63.2 75 48.0
Eucgr.G02349 Eucalyptus grandis HOM05D000709 ORTHO05D002401 2.3e-08 62.8 76 50.0
BcaC06g31650 Brassica carinata HOM05D000709 ORTHO05D021077 3.0e-08 62.4 103 35.9
Phvul.003G027100 Phaseolus vulgaris HOM05D000709 ORTHO05D002401 3.0e-08 62.4 75 48.0
BolC7t42397H Brassica oleracea HOM05D000709 ORTHO05D002401 3.9e-08 62.0 118 35.6
Os11g0705200 Oryza sativa ssp. japonica HOM05D000511 ORTHO05D000413 3.9e-08 62.0 41 63.4
BcaC06g35188 Brassica carinata HOM05D000709 ORTHO05D002401 6.6e-08 61.2 118 35.6
C07p18870 Brassica napus HOM05D000709 ORTHO05D002401 6.6e-08 61.2 118 35.6
Psat0s2763g0040 Pisum sativum HOM05D000709 ORTHO05D002401 6.6e-08 61.2 75 45.3
Glyma.02G100200 Glycine max HOM05D000709 ORTHO05D002401 8.7e-08 60.8 75 46.7
Lalb_Chr10g0099731 Lupinus albus HOM05D000709 ORTHO05D002401 1.5e-07 60.1 83 44.6
Os03g0690600 Oryza sativa ssp. japonica HOM05D000511 ORTHO05D000413 1.9e-07 59.7 36 69.4
VMungo1215G2333 Vigna mungo HOM05D000709 ORTHO05D002401 1.9e-07 59.7 75 46.7
Eucgr.G02939 Eucalyptus grandis HOM05D000511 ORTHO05D000413 2.5e-07 59.3 36 66.7
Zm00001eb164500 Zea mays HOM05D000511 ORTHO05D000413 2.5e-07 59.3 39 59.0
Os12g0573200 Oryza sativa ssp. japonica HOM05D000511 ORTHO05D000413 3.3e-07 58.9 43 62.8
arahy.Tifrunner.gnm1.ann1.13C0EN Arachis hypogaea HOM05D000709 ORTHO05D002401 4.3e-07 58.5 76 48.7
Lalb_Chr04g0254941 Lupinus albus HOM05D000709 ORTHO05D002401 4.3e-07 58.5 79 46.8
Eucgr.G02940 Eucalyptus grandis HOM05D000511 ORTHO05D000413 5.6e-07 58.2 36 61.1
Zm00001eb164530 Zea mays HOM05D000511 ORTHO05D000413 5.6e-07 58.2 39 61.5
PSO063G7345 Papaver somniferum HOM05D000709 ORTHO05D002401 7.3e-07 57.8 60 58.3
Zm00001eb164350 Zea mays HOM05D000511 ORTHO05D000413 7.3e-07 57.8 38 65.8
MBI05_g28377_MAGBIO Magnolia biondii HOM05D000511 ORTHO05D000413 9.6e-07 57.4 39 56.4
Zm00001eb136350 Zea mays HOM05D000511 ORTHO05D000413 9.6e-07 57.4 39 61.5
BcaC05g26436 Brassica carinata HOM05D000709 ORTHO05D021077 1.3e-06 57.0 56 53.6
FAN25G0784 Fragaria x ananassa HOM05D000511 ORTHO05D000413 1.3e-06 57.0 61 42.6
Zm00001eb012280 Zea mays HOM05D000511 ORTHO05D000413 1.3e-06 57.0 36 66.7
arahy.Tifrunner.gnm1.ann1.UCK419 Arachis hypogaea HOM05D000709 ORTHO05D002401 1.6e-06 56.6 76 48.7
MD11G1099000 Malus domestica HOM05D000511 ORTHO05D000413 1.6e-06 56.6 45 51.1
PSO782G4918 Papaver somniferum HOM05D000709 ORTHO05D002401 1.6e-06 56.6 53 58.5
TPR.G5555 Trifolium pratense HOM05D000511 ORTHO05D000413 1.6e-06 56.6 36 61.1
Zm00001eb029390 Zea mays HOM05D000511 ORTHO05D000413 1.6e-06 56.6 39 59.0
Zm00001eb397720 Zea mays HOM05D000511 ORTHO05D000413 1.6e-06 56.6 35 68.6
Lj8C82T13 Lonicera japonica HOM05D000511 ORTHO05D000413 2.1e-06 56.2 40 60.0
VMungo1080G1537 Vigna mungo HOM05D000511 ORTHO05D000413 2.1e-06 56.2 37 62.2
Haze_24119 Corylus avellana HOM05D000511 ORTHO05D000413 2.8e-06 55.8 38 55.3
FAN11G3338 Fragaria x ananassa HOM05D000511 ORTHO05D000413 3.6e-06 55.5 37 56.8
Glyma.11G138000 Glycine max HOM05D000511 ORTHO05D000413 3.6e-06 55.5 37 59.5
Medtr1g093680 Medicago truncatula HOM05D000709 ORTHO05D002401 3.6e-06 55.5 99 39.4
Os11g0705900 Oryza sativa ssp. japonica HOM05D000511 ORTHO05D000413 3.6e-06 55.5 37 62.2
PSO063G1680 Papaver somniferum HOM05D000511 ORTHO05D000413 3.6e-06 55.5 36 58.3
PSO339G4124 Papaver somniferum HOM05D000511 ORTHO05D000413 3.6e-06 55.5 36 58.3
PGR044G0277 Punica granatum HOM05D000511 ORTHO05D000413 3.6e-06 55.5 36 63.9
PGR142G2660 Punica granatum HOM05D000511 ORTHO05D000413 3.6e-06 55.5 38 63.2
BraA07t29046Z Brassica rapa HOM05D001835 ORTHO05D001899 4.8e-06 55.1 76 42.1
CiPaw.01G288900 Carya illinoinensis HOM05D000511 ORTHO05D000413 4.8e-06 55.1 36 61.1
Ca_01316_v3 Cicer arietinum L. HOM05D000511 ORTHO05D000413 4.8e-06 55.1 36 61.1
FAN16G2457 Fragaria x ananassa HOM05D000511 ORTHO05D000413 4.8e-06 55.1 64 43.8
Medtr1g093670 Medicago truncatula HOM05D000709 ORTHO05D002401 4.8e-06 55.1 74 43.2
Aqoxy1G00917 Aquilegia oxysepala HOM05D000511 ORTHO05D000413 6.2e-06 54.7 36 55.6
arahy.Tifrunner.gnm1.ann1.919QYJ Arachis hypogaea HOM05D000709 ORTHO05D002401 6.2e-06 54.7 91 37.4
arahy.Tifrunner.gnm1.ann1.XMHS8A Arachis hypogaea HOM05D000709 ORTHO05D002401 6.2e-06 54.7 91 37.4
Eucgr.J01242 Eucalyptus grandis HOM05D000511 ORTHO05D000413 6.2e-06 54.7 39 59.0
Glyma.15G037000 Glycine max HOM05D000511 ORTHO05D000413 6.2e-06 54.7 37 59.5
MBI14_g12120_MAGBIO Magnolia biondii HOM05D000511 ORTHO05D000413 6.2e-06 54.7 39 53.8
Prupe.6G073900 Prunus persica HOM05D000511 ORTHO05D000413 6.2e-06 54.7 38 57.9
Zm00001eb164490 Zea mays HOM05D000511 ORTHO05D000413 6.2e-06 54.7 36 61.1
Atru.chr12.423 Acer truncatum HOM05D000511 ORTHO05D000413 8.1e-06 54.3 38 57.9
CiPaw.13G092300 Carya illinoinensis HOM05D000511 ORTHO05D000413 8.1e-06 54.3 37 56.8
Ciclev10030787m.g Citrus clementina HOM05D000511 ORTHO05D000413 8.1e-06 54.3 38 57.9
Eucgr.G02941 Eucalyptus grandis HOM05D000511 ORTHO05D000413 8.1e-06 54.3 40 55.0
FvH4_3g36662 Fragaria vesca HOM05D000511 ORTHO05D000413 8.1e-06 54.3 37 54.1
Manes.07G117400 Manihot esculenta HOM05D000511 ORTHO05D000413 8.1e-06 54.3 40 55.0
Psat5g285200 Pisum sativum HOM05D000511 ORTHO05D000413 8.1e-06 54.3 36 58.3
Psat5g285240 Pisum sativum HOM05D000511 ORTHO05D000413 8.1e-06 54.3 36 58.3
Rhsim13G0080300 Rhododendron simsii HOM05D000511 ORTHO05D000413 8.1e-06 54.3 114 31.6
Sabra08G0041900 Salix brachista HOM05D000511 ORTHO05D000413 8.1e-06 54.3 39 56.4


User provided reference genes

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