Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 1.5e-47 192.6 100 100.0
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 8.1e-46 186.8 100 98.0
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 4.0e-45 184.5 100 97.0
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 8.4e-35 150.2 80 96.2
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 2.3e-32 142.1 78 94.9
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 9.3e-26 120.2 98 69.4
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 4.3e-23 111.3 100 54.0
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 2.1e-22 109.0 100 54.0
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 3.6e-22 108.2 100 51.0
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 1.8e-21 105.9 100 49.0
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 5.3e-21 104.4 100 53.0
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 1.5e-20 102.8 100 49.0
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 1.5e-20 102.8 100 49.0
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 2.6e-20 102.1 100 50.0
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 4.5e-20 101.3 100 51.0
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 7.6e-20 100.5 100 48.0
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 7.6e-20 100.5 100 47.0
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 2.2e-19 99.0 100 49.0
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 2.9e-19 98.6 100 49.0
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 2.9e-19 98.6 109 48.6
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 3.8e-19 98.2 100 50.0
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 4.9e-19 97.8 100 49.0
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 4.9e-19 97.8 100 45.0
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 8.4e-19 97.1 100 45.0
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 8.4e-19 97.1 100 45.0
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 1.1e-18 96.7 100 52.0
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 1.4e-18 96.3 99 48.5
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 1.4e-18 96.3 99 48.5
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 1.4e-18 96.3 100 46.0
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 1.9e-18 95.9 99 48.5
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 1.9e-18 95.9 99 48.5
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 1.9e-18 95.9 99 48.5
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 1.9e-18 95.9 100 49.0
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 1.9e-18 95.9 96 45.8
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 1.9e-18 95.9 96 45.8
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 2.4e-18 95.5 100 49.0
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.2e-18 95.1 100 44.0
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 4.2e-18 94.7 99 47.5
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 4.2e-18 94.7 99 49.5
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 4.2e-18 94.7 100 45.0
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 5.4e-18 94.4 100 44.0
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 5.4e-18 94.4 100 43.0
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 1.6e-17 92.8 100 46.0
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 1.6e-17 92.8 99 47.5
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 2.1e-17 92.4 99 47.5
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 2.1e-17 92.4 100 44.0
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 2.7e-17 92.0 100 43.0
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 2.7e-17 92.0 100 46.0
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 2.7e-17 92.0 100 43.0
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 3.5e-17 91.7 100 46.0
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 3.5e-17 91.7 100 47.0
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 6.0e-17 90.9 100 47.0
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 6.0e-17 90.9 99 46.5
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 7.9e-17 90.5 100 45.0
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 7.9e-17 90.5 100 47.0
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 1.0e-16 90.1 99 46.5
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.3e-16 89.7 99 45.5
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 1.3e-16 89.7 100 44.0
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 1.8e-16 89.4 100 42.0
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 2.3e-16 89.0 100 43.0
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 2.3e-16 89.0 100 45.0
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 3.0e-16 88.6 100 45.0
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 3.0e-16 88.6 100 44.0
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 3.9e-16 88.2 100 42.0
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 3.9e-16 88.2 100 41.0
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 6.7e-16 87.4 100 46.0
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 8.7e-16 87.0 100 44.0
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.5e-15 86.3 93 48.4
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 2.5e-15 85.5 101 44.6
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 2.5e-15 85.5 99 44.4
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 3.3e-15 85.1 99 44.4
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 3.3e-15 85.1 100 42.0
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 4.3e-15 84.7 100 40.0
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 4.3e-15 84.7 100 42.0
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 1.3e-14 83.2 100 44.0
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 1.6e-14 82.8 100 40.0
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 6.2e-14 80.9 107 41.1
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 6.2e-14 80.9 100 40.0
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 8.1e-14 80.5 100 43.0
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 8.1e-14 80.5 100 45.0
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 8.1e-14 80.5 100 39.0
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 1.1e-13 80.1 100 42.0
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 1.1e-13 80.1 107 41.1
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 1.1e-13 80.1 100 44.0
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 5.3e-13 77.8 126 34.9
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 9.0e-13 77.0 106 41.5
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 2.0e-12 75.9 135 31.9
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 4.5e-12 74.7 99 39.4
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 1.0e-11 73.6 77 48.1
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 1.3e-11 73.2 76 48.7
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 2.2e-11 72.4 80 50.0
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 2.2e-11 72.4 82 42.7
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 3.8e-11 71.6 123 36.6
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 3.8e-11 71.6 123 36.6
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 3.2e-10 68.6 76 46.1
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 1.2e-09 66.6 77 45.5
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 3.9e-08 61.6 113 38.1
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 1.1e-07 60.1 96 38.5
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 1.5e-07 59.7 68 42.6
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 1.9e-07 59.3 120 33.3
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 8.2e-06 53.9 70 41.4


User provided reference genes

Program Settings