Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb307930 Zea mays HOM05D006652 ORTHO05D008645 2.4e-113 412.1 203 100.0
Zm00001eb223890 Zea mays HOM05D006652 ORTHO05D008645 8.3e-106 387.1 203 92.1
Os10g0181600 Oryza sativa ssp. japonica HOM05D006652 ORTHO05D008645 8.3e-98 360.5 203 84.7
MBI11_g14404_MAGBIO Magnolia biondii HOM05D006652 ORTHO05D008645 2.7e-80 302.4 204 67.6
QL08p041412 Quercus lobata HOM05D006652 ORTHO05D008645 7.8e-80 300.8 204 69.1
TAR629G0548 Trochodendron aralioides HOM05D006652 ORTHO05D008645 7.8e-80 300.8 204 70.6
GSVIVG01020686001 Vitis vinifera HOM05D006652 ORTHO05D008645 1.1e-78 297.0 204 68.1
TWI59G0297 Tripterygium wilfordii HOM05D006652 ORTHO05D008645 1.5e-78 296.6 203 65.5
Aqoxy4G00418 Aquilegia oxysepala HOM05D006652 ORTHO05D008645 1.9e-78 296.2 204 67.6
AUR62038922 Chenopodium quinoa HOM05D006652 ORTHO05D008645 3.3e-78 295.4 204 67.6
Lj8C103T10 Lonicera japonica HOM05D006652 ORTHO05D008645 3.3e-78 295.4 206 67.0
ECA234G1589 Erigeron canadensis HOM05D006652 ORTHO05D008645 1.6e-77 293.1 204 66.7
CiPaw.03G187000 Carya illinoinensis HOM05D006652 ORTHO05D008645 2.8e-77 292.4 204 65.2
Nitab4.5_0000822g0100 Nicotiana tabacum HOM05D006652 ORTHO05D008645 3.6e-77 292.0 204 66.2
Psat7g166280 Pisum sativum HOM05D006652 ORTHO05D008645 8.1e-77 290.8 204 65.2
EL10Ac9g20915 Beta vulgaris HOM05D006652 ORTHO05D008645 1.1e-76 290.4 204 66.2
Manes.13G137800 Manihot esculenta HOM05D006652 ORTHO05D008645 1.1e-76 290.4 204 64.2
Nn1g04382 Nelumbo nucifera HOM05D006652 ORTHO05D008645 1.1e-76 290.4 204 66.7
vmacro09218 Vaccinium macrocarpon HOM05D006652 ORTHO05D008645 1.4e-76 290.0 205 65.9
Dinv08786 Davidia involucrata HOM05D006652 ORTHO05D008645 1.8e-76 289.7 205 67.3
Glyma.06G283400 Glycine max HOM05D006652 ORTHO05D008645 2.3e-76 289.3 205 65.9
arahy.Tifrunner.gnm1.ann1.KP1SVS Arachis hypogaea HOM05D006652 ORTHO05D008645 3.1e-76 288.9 204 64.7
Zm00001eb127120 Zea mays HOM05D006652 ORTHO05D008645 3.1e-76 288.9 159 89.3
Nitab4.5_0008146g0020 Nicotiana tabacum HOM05D006652 ORTHO05D008645 4.0e-76 288.5 204 64.7
CSS0047332 Camellia sinensis var. sinensis HOM05D006652 ORTHO05D008645 5.2e-76 288.1 205 66.3
Medtr4g079750 Medicago truncatula HOM05D006652 ORTHO05D008645 6.8e-76 287.7 205 65.4
Lj3g0009013 Lotus japonicus HOM05D006652 ORTHO05D008645 1.2e-75 287.0 205 64.4
Lalb_Chr19g0134921 Lupinus albus HOM05D006652 ORTHO05D008645 1.2e-75 287.0 205 65.4
Peaxi162Scf00241g00812 Petunia axillaris HOM05D006652 ORTHO05D008645 1.5e-75 286.6 204 64.2
Phvul.011G134400 Phaseolus vulgaris HOM05D006652 ORTHO05D008645 1.5e-75 286.6 205 65.4
arahy.Tifrunner.gnm1.ann1.5ZDL5Q Arachis hypogaea HOM05D006652 ORTHO05D008645 2.0e-75 286.2 204 63.7
CDE11G0921 Ceratophyllum demersum HOM05D006652 ORTHO05D008645 4.4e-75 285.0 204 66.2
Ca_18890_v3 Cicer arietinum L. HOM05D006652 ORTHO05D008645 4.4e-75 285.0 205 65.9
CAN.G782.5 Capsicum annuum HOM05D006652 ORTHO05D008645 7.5e-75 284.3 204 64.2
Cc05_g08190 Coffea canephora HOM05D006652 ORTHO05D008645 9.8e-75 283.9 205 65.9
Hma1.2p1_0166F.1_g073540 Hydrangea macrophylla HOM05D006652 ORTHO05D008645 9.8e-75 283.9 204 63.7
Lsat_1_v5_gn_8_140221 Lactuca sativa HOM05D006652 ORTHO05D008645 9.8e-75 283.9 205 63.9
Sabra19G0103300 Salix brachista HOM05D006652 ORTHO05D008645 9.8e-75 283.9 204 63.7
Hund07829 Selenicereus undatus HOM05D006652 ORTHO05D008645 9.8e-75 283.9 204 65.2
Cc05_g08160 Coffea canephora HOM05D006652 ORTHO05D008645 1.3e-74 283.5 204 65.2
Glyma.12G122700 Glycine max HOM05D006652 ORTHO05D008645 1.3e-74 283.5 205 63.9
HanXRQChr17g0558041 Helianthus annuus HOM05D006652 ORTHO05D008645 1.7e-74 283.1 205 63.4
Potri.019G089700 Populus trichocarpa HOM05D006652 ORTHO05D008645 1.7e-74 283.1 204 63.2
Solyc10g008020.3 Solanum lycopersicum HOM05D006652 ORTHO05D008645 1.7e-74 283.1 204 63.2
Sopen10g003890 Solanum pennellii HOM05D006652 ORTHO05D008645 1.7e-74 283.1 204 63.2
Sabra19G0100100 Salix brachista HOM05D006652 ORTHO05D008645 2.2e-74 282.7 204 63.2
ATR0661G163 Amborella trichopoda HOM05D006652 ORTHO05D008645 3.7e-74 282.0 204 64.7
Actinidia39342 Actinidia chinensis HOM05D006652 ORTHO05D008645 6.4e-74 281.2 205 64.4
SalBow7G3656 Salvia bowleyana HOM05D006652 ORTHO05D008645 6.4e-74 281.2 204 64.2
COL.COLO4_33547 Corchorus olitorius HOM05D006652 ORTHO05D008645 1.4e-73 280.0 202 65.3
Glyma.06G283600 Glycine max HOM05D006652 ORTHO05D008645 1.4e-73 280.0 205 63.4
VMungo1127G0176 Vigna mungo HOM05D006652 ORTHO05D008645 1.4e-73 280.0 205 63.9
MSTRG.14312 Avicennia marina HOM05D006652 ORTHO05D008645 2.4e-73 279.3 204 63.7
Migut.H02157 Erythranthe guttata HOM05D006652 ORTHO05D008645 5.4e-73 278.1 204 62.3
Thecc.01G148700 Theobroma cacao HOM05D006652 ORTHO05D008645 1.2e-72 276.9 204 64.7
unitig_21.g20276 Utricularia gibba HOM05D006652 ORTHO05D008645 1.0e-71 273.9 205 62.4
Eucgr.K01102 Eucalyptus grandis HOM05D006652 ORTHO05D008645 8.6e-71 270.8 204 60.3
Atru.chr6.2810_Atru.chr6.2811 Acer truncatum HOM05D006652 ORTHO05D008645 2.5e-70 269.2 202 61.9
Gohir.A10G153800 Gossypium hirsutum HOM05D006652 ORTHO05D008645 3.3e-70 268.9 204 61.8
Gohir.D10G112300 Gossypium hirsutum HOM05D006652 ORTHO05D008645 4.3e-70 268.5 204 61.8
Gorai.011G124200 Gossypium raimondii HOM05D006652 ORTHO05D008645 4.3e-70 268.5 204 61.8
PGR142G2816 Punica granatum HOM05D006652 ORTHO05D008645 3.1e-68 262.3 204 58.3
Rhsim04G0074100 Rhododendron simsii HOM05D006652 ORTHO05D008645 4.0e-68 261.9 256 52.7
Ciclev10015734m.g Citrus clementina HOM05D006652 ORTHO05D008645 2.0e-67 259.6 202 60.9
Sed0018596 Sechium edule HOM05D006652 ORTHO05D008645 2.6e-67 259.2 204 57.4
Glyma.06G283500 Glycine max HOM05D006652 ORTHO05D008645 4.4e-67 258.5 215 57.7
CsaV3_6G018460 Cucumis sativus L. HOM05D006652 ORTHO05D008645 5.8e-67 258.1 204 57.8
Duzib187G0644 Durio zibethinus HOM05D006652 ORTHO05D008645 4.9e-66 255.0 211 58.3
AUR62038997 Chenopodium quinoa HOM05D006652 ORTHO05D008645 8.4e-66 254.2 177 68.4
PGSC0003DMG400010544 Solanum tuberosum HOM05D006652 ORTHO05D008645 8.4e-66 254.2 266 48.9
MBI11_g19676_MAGBIO Magnolia biondii HOM05D006652 ORTHO05D008645 6.0e-64 248.1 172 65.1
Zm00001eb155780 Zea mays HOM05D006652 ORTHO05D008645 2.5e-62 242.7 203 64.5
Pp3c3_7460 Physcomitrium patens HOM05D006652 ORTHO05D008645 1.2e-61 240.4 208 56.2
SGA_v2.0_scaffold109G31132 Striga asiatica HOM05D006652 ORTHO05D008645 1.4e-60 236.9 172 64.5
Zm00001eb272210 Zea mays HOM05D006652 ORTHO05D008645 7.6e-59 231.1 202 63.4
Zm00001eb202810 Zea mays HOM05D006652 ORTHO05D008645 1.1e-57 227.3 203 62.6
Mapoly0061s0036 Marchantia polymorpha HOM05D006652 ORTHO05D008645 9.3e-57 224.2 203 49.8
PGR142G0648 Punica granatum HOM05D006652 ORTHO05D008645 1.7e-55 219.9 204 52.9
SMO334G0043 Selaginella moellendorffii HOM05D006652 ORTHO05D008645 5.1e-55 218.4 197 54.8
Cc00_g35820 Coffea canephora HOM05D006652 ORTHO05D008645 3.9e-47 192.2 130 66.9
ClCG02G017930 Citrullus lanatus HOM05D006652 ORTHO05D008645 2.8e-45 186.0 145 61.4
CBR_g20425 Chara braunii HOM05D006652 ORTHO05D008645 6.2e-45 184.9 206 44.7
MCO11G400 Micromonas commoda HOM05D006652 ORTHO05D008645 8.1e-45 184.5 198 44.9
TPR.G21861 Trifolium pratense HOM05D006652 ORTHO05D008645 4.9e-42 175.3 126 61.1
Mapoly0285s0004 Marchantia polymorpha HOM05D006652 ORTHO05D008645 4.2e-41 172.2 159 49.7
AagrBONN_evm.TU.Sc2ySwM_228.444 Anthoceros agrestis HOM05D006652 ORTHO05D008645 5.5e-41 171.8 174 50.0
PRCOL_00002204 Prasinoderma coloniale HOM05D006652 ORTHO05D008645 2.7e-40 169.5 207 43.5
Ca_18889_v3 Cicer arietinum L. HOM05D006652 ORTHO05D008645 1.3e-39 167.2 118 63.6
MELO3C019759.2 Cucumis melo HOM05D006652 ORTHO05D008645 1.5e-38 163.7 119 61.3
Haze_13351 Corylus avellana HOM05D006652 ORTHO05D008645 2.5e-38 162.9 120 64.2
SMO118G0546 Selaginella moellendorffii HOM05D006652 ORTHO05D008645 2.9e-34 149.4 199 40.7
Pp3c17_23540 Physcomitrium patens HOM05D006652 ORTHO05D008645 9.3e-33 144.4 191 38.7
CBR_g20426 Chara braunii HOM05D006652 ORTHO05D008645 2.7e-32 142.9 267 31.1
DCAR_013062 Daucus carota HOM05D006652 ORTHO05D008645 4.6e-32 142.1 172 46.5
AUR62024835 Chenopodium quinoa HOM05D006652 ORTHO05D008645 1.5e-30 137.1 115 57.4
Mapoly0050s0024 Marchantia polymorpha HOM05D006652 ORTHO05D008645 2.5e-30 136.3 194 38.7
ECA234G0151 Erigeron canadensis HOM05D006652 ORTHO05D008645 1.4e-28 130.6 101 60.4
Cre03.g200350 Chlamydomonas reinhardtii HOM05D006652 ORTHO05D008645 2.4e-28 129.8 201 36.3
SEGI_35274 Sequoiadendron giganteum HOM05D006652 ORTHO05D008645 4.1e-28 129.0 188 38.8
Cre06.g259401 Chlamydomonas reinhardtii HOM05D006652 ORTHO05D008645 1.0e-26 124.4 196 36.7
PRCOL_00006996 Prasinoderma coloniale HOM05D006652 ORTHO05D008645 2.5e-22 109.8 193 35.8
MCO08G076 Micromonas commoda HOM05D006652 ORTHO05D008645 2.2e-21 106.7 208 33.7
TPR.G21704 Trifolium pratense HOM05D006652 ORTHO05D008645 6.3e-21 105.1 113 48.7
Zm00001eb048070 Zea mays HOM05D001272 ORTHO05D001099 1.1e-20 104.4 57 87.7
CBR_g34298 Chara braunii HOM05D006652 ORTHO05D008645 2.9e-18 96.3 189 32.3
arahy.Tifrunner.gnm1.ann1.MYHL2J Arachis hypogaea HOM05D006652 ORTHO05D008645 3.8e-18 95.9 79 55.7
AagrBONN_evm.TU.Sc2ySwM_117.2543 Anthoceros agrestis HOM05D006652 ORTHO05D008645 1.4e-15 87.4 120 40.8
Ca_18891_v3 Cicer arietinum L. HOM05D006652 ORTHO05D008645 4.1e-12 75.9 44 72.7
TPR.G21859 Trifolium pratense HOM05D006652 ORTHO05D008645 2.0e-11 73.6 46 69.6
MCO09G339 Micromonas commoda HOM05D006652 ORTHO05D268879 8.5e-10 68.2 186 23.7
PRCOL_00002129 Prasinoderma coloniale HOM05D006652 ORTHO05D008645 4.2e-09 65.9 185 27.0
MCO15G420 Micromonas commoda HOM05D006652 ORTHO05D028803 9.4e-09 64.7 232 24.1
Sopen12g009240 Solanum pennellii HOM05D005748 ORTHO05D007123 3.6e-08 62.8 119 32.8
PRCOL_00001996 Prasinoderma coloniale HOM05D006652 ORTHO05D028803 1.0e-07 61.2 206 24.8
PGSC0003DMG400020380 Solanum tuberosum HOM05D005748 ORTHO05D007123 1.4e-07 60.8 119 32.8
CAN.G8.38 Capsicum annuum HOM05D005748 ORTHO05D007123 1.8e-07 60.5 119 31.1
Haze_13350 Corylus avellana HOM05D006652 ORTHO05D008645 2.0e-06 57.0 31 77.4


User provided reference genes

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