Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 1.1e-285 986.1 537 100.0
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 7.8e-220 767.3 464 83.4
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 2.1e-217 759.2 465 81.7
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 2.8e-217 758.8 464 82.3
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 1.0e-216 756.9 464 82.3
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 1.0e-216 756.9 464 82.3
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 1.0e-216 756.9 464 82.3
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 1.0e-216 756.9 498 78.1
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 2.3e-216 755.7 464 82.1
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 2.3e-216 755.7 464 82.1
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 6.8e-216 754.2 456 84.2
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 1.2e-215 753.4 464 81.7
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 9.8e-215 750.4 464 82.1
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 6.4e-214 747.7 466 80.5
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 4.1e-213 745.0 465 81.9
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 5.4e-213 744.6 458 82.8
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 9.2e-213 743.8 458 82.3
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 9.2e-213 743.8 458 81.9
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 1.2e-212 743.4 458 82.3
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 1.2e-212 743.4 458 82.3
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 1.6e-212 743.0 516 75.0
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 3.5e-212 741.9 458 82.1
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 3.5e-212 741.9 458 82.1
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 4.6e-212 741.5 457 81.6
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 6.0e-212 741.1 462 80.7
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 7.8e-212 740.7 461 81.3
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 7.8e-212 740.7 463 81.9
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 1.0e-211 740.3 458 81.4
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 2.3e-211 739.2 458 80.8
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 2.3e-211 739.2 458 82.1
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 3.9e-211 738.4 458 82.3
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 5.0e-211 738.0 458 81.7
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 8.6e-211 737.3 455 81.8
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 8.6e-211 737.3 463 79.9
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 8.6e-211 737.3 454 82.2
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 1.1e-210 736.9 465 80.9
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 1.1e-210 736.9 458 81.9
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 1.5e-210 736.5 458 81.4
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 1.5e-210 736.5 458 81.9
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 1.9e-210 736.1 455 81.8
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 2.5e-210 735.7 461 80.5
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 2.5e-210 735.7 461 80.5
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 2.5e-210 735.7 453 81.2
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 2.5e-210 735.7 459 80.8
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 2.5e-210 735.7 456 82.5
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 3.3e-210 735.3 461 80.7
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 3.3e-210 735.3 456 81.6
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 3.3e-210 735.3 456 81.6
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 4.3e-210 734.9 458 81.4
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 5.6e-210 734.6 459 81.0
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 1.2e-209 733.4 458 81.0
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 1.2e-209 733.4 463 79.7
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 1.2e-209 733.4 458 81.7
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 1.6e-209 733.0 459 80.6
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 2.1e-209 732.6 466 79.6
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 2.1e-209 732.6 458 81.0
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 2.8e-209 732.3 453 80.8
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 2.8e-209 732.3 458 81.2
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 3.6e-209 731.9 458 81.2
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 4.7e-209 731.5 466 79.8
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 4.7e-209 731.5 466 77.9
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 6.2e-209 731.1 463 80.6
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 1.4e-208 729.9 458 81.4
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 1.4e-208 729.9 465 79.6
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 3.1e-208 728.8 458 80.3
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 4.0e-208 728.4 465 80.2
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 4.0e-208 728.4 476 79.2
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 5.2e-208 728.0 492 77.4
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 2.0e-207 726.1 464 78.7
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 3.4e-207 725.3 458 81.4
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 5.8e-207 724.5 464 78.7
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 7.5e-207 724.2 464 78.4
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 1.3e-206 723.4 468 77.6
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 1.3e-206 723.4 458 79.5
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 2.2e-206 722.6 483 77.4
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 2.2e-206 722.6 457 79.4
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 3.7e-206 721.8 458 79.7
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 4.9e-206 721.5 486 82.7
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 4.9e-206 721.5 458 80.1
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 1.1e-205 720.3 474 78.5
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.1e-205 720.3 457 80.3
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 1.1e-205 720.3 457 80.3
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.4e-205 719.9 457 80.3
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 2.4e-205 719.2 486 77.0
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 3.2e-205 718.8 458 79.9
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 4.1e-205 718.4 468 79.3
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 7.1e-205 717.6 458 79.0
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 9.2e-205 717.2 458 79.3
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 1.2e-204 716.8 465 78.1
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 1.6e-204 716.5 452 79.2
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 2.7e-204 715.7 465 78.1
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 4.6e-204 714.9 458 79.3
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 4.6e-204 714.9 467 78.2
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 1.3e-203 713.4 456 80.0
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 3.9e-203 711.8 495 75.8
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 2.5e-202 709.1 459 78.4
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 8.9e-200 700.7 465 77.4
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 4.4e-199 698.4 462 76.8
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 7.6e-199 697.6 458 79.7
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.9e-197 693.0 449 79.5
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 3.5e-196 688.7 466 75.5
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 6.0e-196 688.0 443 78.6
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 8.6e-195 684.1 458 78.4
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 4.7e-193 678.3 458 74.7
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 2.0e-191 672.9 460 74.3
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 2.3e-187 659.4 462 72.7
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 3.3e-186 655.6 458 74.0
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 3.6e-185 652.1 399 82.7
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 1.8e-184 649.8 396 84.1
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 3.4e-183 645.6 464 70.7
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 4.4e-183 645.2 410 82.2
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 1.2e-180 637.1 399 80.2
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.4e-176 623.6 458 70.7
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 1.8e-176 623.2 404 79.2
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 1.4e-173 613.6 458 71.4
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 3.9e-171 605.5 617 56.6
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.7e-166 590.1 357 84.9
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 7.1e-165 584.7 400 73.8
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.5e-162 577.0 398 74.1
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 2.1e-161 573.2 401 73.3
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 1.4e-160 570.5 367 79.8
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 2.4e-160 569.7 398 73.4
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.5e-159 567.0 356 81.2
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 5.9e-159 565.1 402 71.6
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 7.2e-157 558.1 358 79.1
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 2.9e-150 536.2 468 63.2
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 1.4e-144 517.3 464 61.9
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 3.6e-132 476.1 465 59.6
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 4.7e-132 475.7 436 62.6
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 1.3e-129 467.6 277 85.6
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 6.5e-126 455.3 302 77.5
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 2.1e-124 450.3 298 76.2
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 8.0e-124 448.4 331 69.5
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 2.8e-121 439.9 364 65.1
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 1.8e-115 420.6 462 49.6
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 1.7e-110 404.1 257 79.8
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 2.0e-106 390.6 236 82.6
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 6.4e-105 385.6 261 76.2
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 2.8e-100 370.2 222 83.8
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 8.4e-81 305.4 213 71.4
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 7.1e-72 275.8 236 64.4
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 1.5e-66 258.1 458 40.0
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 8.7e-62 242.3 150 77.3
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 1.7e-57 228.0 160 71.2
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 1.9e-56 224.6 193 60.6
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.8e-54 218.0 170 64.7
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 3.9e-54 216.9 458 36.7
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 4.0e-51 206.8 142 73.9
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 1.3e-44 185.3 116 78.4
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 1.8e-35 154.8 96 77.1
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 5.9e-34 149.8 102 71.6
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.2e-33 147.9 103 69.9
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 1.5e-29 135.2 109 68.8
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 6.3e-28 129.8 156 53.2
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 3.6e-23 114.0 69 79.7
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 1.0e-22 112.5 78 75.6
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 1.4e-22 112.1 102 57.8
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 2.8e-20 104.4 77 68.8
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 3.5e-18 97.4 55 74.5
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 5.0e-17 93.6 61 72.1
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 1.5e-16 92.0 55 72.7
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 5.2e-14 83.6 53 77.4
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 4.8e-12 77.0 141 35.5
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 5.3e-11 73.6 93 51.6
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 7.7e-10 69.7 58 60.3
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 2.5e-08 64.7 44 68.2
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 8.0e-07 59.7 58 48.3
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 6.8e-06 56.6 39 74.4


User provided reference genes

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