Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb306590 Zea mays HOM05D005594 ORTHO05D006403 3.7e-112 408.3 216 100.0
Zm00001eb365030 Zea mays HOM05D005594 ORTHO05D006403 1.9e-60 236.5 130 96.9
Zm00001eb388820 Zea mays HOM05D005594 ORTHO05D006403 4.7e-59 231.9 130 95.4
Os01g0911000 Oryza sativa ssp. japonica HOM05D005594 ORTHO05D006403 1.6e-38 163.7 130 70.8
Zm00001eb265170 Zea mays HOM05D001689 ORTHO05D001643 8.7e-21 104.8 61 90.2
Zm00001eb245160 Zea mays HOM05D009386 ORTHO05D011419 4.8e-19 99.0 61 86.9
Duzib093G1195 Durio zibethinus HOM05D005594 ORTHO05D006403 1.4e-15 87.4 131 48.1
HPP92_001778 Vanilla planifolia HOM05D005594 ORTHO05D006403 1.2e-14 84.3 146 43.2
Gohir.A05G218700 Gossypium hirsutum HOM05D005594 ORTHO05D006403 2.1e-14 83.6 125 44.8
Zm00001eb076500 Zea mays HOM05D005594 ORTHO05D006403 2.7e-14 83.2 50 88.0
Gohir.D05G221400 Gossypium hirsutum HOM05D005594 ORTHO05D006403 3.5e-14 82.8 125 44.8
Gorai.009G228600 Gossypium raimondii HOM05D005594 ORTHO05D006403 3.5e-14 82.8 125 44.8
MD08G1202000 Malus domestica HOM05D005594 ORTHO05D006403 6.0e-14 82.0 122 45.1
Thecc.08G073300 Theobroma cacao HOM05D005594 ORTHO05D006403 7.9e-14 81.6 130 44.6
ClCG02G008140 Citrullus lanatus HOM05D005594 ORTHO05D006403 3.9e-13 79.3 133 42.9
Aqoxy5G01356 Aquilegia oxysepala HOM05D005594 ORTHO05D006403 8.7e-13 78.2 91 47.3
CDE02G1340 Ceratophyllum demersum HOM05D005594 ORTHO05D006403 1.1e-12 77.8 128 44.5
Manes.18G056600 Manihot esculenta HOM05D005594 ORTHO05D006403 1.5e-12 77.4 129 45.0
Sed0005434 Sechium edule HOM05D005594 ORTHO05D006403 1.9e-12 77.0 133 41.4
COL.COLO4_35271 Corchorus olitorius HOM05D005594 ORTHO05D006403 2.5e-12 76.6 121 43.8
MELO3C003509.2 Cucumis melo HOM05D005594 ORTHO05D006403 5.7e-12 75.5 128 39.1
CsaV3_3G048080 Cucumis sativus L. HOM05D005594 ORTHO05D006403 9.6e-12 74.7 132 40.2
Rhsim05G0205900 Rhododendron simsii HOM05D005594 ORTHO05D006403 9.6e-12 74.7 124 41.9
MBI16_g06011_MAGBIO Magnolia biondii HOM05D005594 ORTHO05D006403 1.3e-11 74.3 132 37.9
GSVIVG01026918001 Vitis vinifera HOM05D005594 ORTHO05D006403 1.3e-11 74.3 131 42.0
TAR381G1609 Trochodendron aralioides HOM05D005594 ORTHO05D006403 2.1e-11 73.6 132 40.9
BolC5t29354H Brassica oleracea HOM05D000310 ORTHO05D000509 3.7e-11 72.8 129 42.6
Aa31LG1G6880 Aethionema arabicum HOM05D005594 ORTHO05D006403 4.8e-11 72.4 130 41.5
Eucgr.F02158 Eucalyptus grandis HOM05D005594 ORTHO05D006403 8.2e-11 71.6 132 40.2
CSS0029582 Camellia sinensis var. sinensis HOM05D005594 ORTHO05D006403 1.1e-10 71.2 132 39.4
Rhsim06G0070100 Rhododendron simsii HOM05D005594 ORTHO05D006403 1.1e-10 71.2 120 40.8
BraA06t23703Z Brassica rapa HOM05D005594 ORTHO05D006403 1.4e-10 70.9 127 42.5
CiPaw.01G111900 Carya illinoinensis HOM05D005594 ORTHO05D006403 1.4e-10 70.9 124 40.3
Oeu040880.1 Olea europaea HOM05D005594 ORTHO05D006403 1.4e-10 70.9 130 40.0
Prupe.1G535400 Prunus persica HOM05D005594 ORTHO05D006403 1.4e-10 70.9 128 39.1
GSVIVG01009200001 Vitis vinifera HOM05D005594 ORTHO05D006403 1.4e-10 70.9 130 40.0
EL10Ac1g00491 Beta vulgaris HOM05D005594 ORTHO05D006403 1.8e-10 70.5 126 39.7
CSS0014517 Camellia sinensis var. sinensis HOM05D005594 ORTHO05D006403 1.8e-10 70.5 125 39.2
CiPaw.07G163500 Carya illinoinensis HOM05D005594 ORTHO05D006403 1.8e-10 70.5 129 39.5
AT1G07840 Arabidopsis thaliana HOM05D005594 ORTHO05D006403 2.4e-10 70.1 130 42.3
Nn1g05624 Nelumbo nucifera HOM05D005594 ORTHO05D006403 2.4e-10 70.1 134 39.6
Haze_22483 Corylus avellana HOM05D005594 ORTHO05D006403 3.1e-10 69.7 128 39.1
Sp1g06520 Schrenkiella parvula HOM05D005594 ORTHO05D006403 3.1e-10 69.7 118 39.8
Ah.07g203840 Amaranthus hybridus HOM05D005594 ORTHO05D006403 4.1e-10 69.3 124 41.9
A06p04960 Brassica napus HOM05D005594 ORTHO05D006403 4.1e-10 69.3 127 41.7
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 4.1e-10 69.3 127 41.7
CAN.G193.4 Capsicum annuum HOM05D005594 ORTHO05D006403 4.1e-10 69.3 127 40.9
SalBow3G3026 Salvia bowleyana HOM05D005594 ORTHO05D006403 4.1e-10 69.3 126 38.9
PGSC0003DMG400008701 Solanum tuberosum HOM05D005594 ORTHO05D006403 4.1e-10 69.3 130 39.2
TAR625G0360 Trochodendron aralioides HOM05D005594 ORTHO05D006403 4.1e-10 69.3 122 42.6
CARHR007650 Cardamine hirsuta HOM05D005594 ORTHO05D006403 5.3e-10 68.9 130 42.3
CANSAT35G1072 Cannabis sativa HOM05D005594 ORTHO05D006403 6.9e-10 68.6 90 43.3
Sopen04g030280 Solanum pennellii HOM05D005594 ORTHO05D006403 6.9e-10 68.6 130 39.2
HanXRQChr09g0253981 Helianthus annuus HOM05D005594 ORTHO05D006403 1.2e-09 67.8 128 37.5
Sc15g0003090 Simmondsia chinensis HOM05D005594 ORTHO05D006403 1.2e-09 67.8 128 39.8
Solyc04g076560.3 Solanum lycopersicum HOM05D005594 ORTHO05D006403 1.2e-09 67.8 130 40.0
Cpa.g.sc1556.4 Carica papaya HOM05D005594 ORTHO05D006403 1.5e-09 67.4 133 37.6
QL09p018366 Quercus lobata HOM05D005594 ORTHO05D006403 1.5e-09 67.4 90 41.1
QL12p040902 Quercus lobata HOM05D005594 ORTHO05D006403 1.5e-09 67.4 90 41.1
TPR.G6332 Trifolium pratense HOM05D005594 ORTHO05D006403 1.5e-09 67.4 130 37.7
PSO170G0052 Papaver somniferum HOM05D005594 ORTHO05D006403 2.6e-09 66.6 130 36.9
Potri.005G152200 Populus trichocarpa HOM05D005594 ORTHO05D006403 2.6e-09 66.6 130 41.5
PGR042G0833 Punica granatum HOM05D005594 ORTHO05D006403 2.6e-09 66.6 88 40.9
Sabra05G0119000 Salix brachista HOM05D005594 ORTHO05D006403 2.6e-09 66.6 128 43.0
vmacro21357 Vaccinium macrocarpon HOM05D005594 ORTHO05D006403 2.6e-09 66.6 121 39.7
Ciclev10001834m.g Citrus clementina HOM05D005594 ORTHO05D006403 3.4e-09 66.2 119 38.7
arahy.Tifrunner.gnm1.ann1.7TC8PB Arachis hypogaea HOM05D005594 ORTHO05D006403 4.5e-09 65.9 122 38.5
arahy.Tifrunner.gnm1.ann1.X1J0TB Arachis hypogaea HOM05D005594 ORTHO05D006403 4.5e-09 65.9 122 38.5
THA.LOC104800630 Tarenaya hassleriana HOM05D005594 ORTHO05D006403 4.5e-09 65.9 130 38.5
Nitab4.5_0009755g0010 Nicotiana tabacum HOM05D005594 ORTHO05D006403 5.9e-09 65.5 122 39.3
PSO675G6381 Papaver somniferum HOM05D005594 ORTHO05D006403 1.0e-08 64.7 130 36.2
Carub.0001s0718 Capsella rubella HOM05D005594 ORTHO05D006403 2.2e-08 63.5 109 43.1
Hund26823 Selenicereus undatus HOM05D005594 ORTHO05D006403 2.2e-08 63.5 128 35.9
Nitab4.5_0000131g0040 Nicotiana tabacum HOM05D005594 ORTHO05D006403 2.9e-08 63.2 129 37.2
CiPaw.01G112000 Carya illinoinensis HOM05D005594 ORTHO05D006403 3.8e-08 62.8 71 46.5
PSO541G2296 Papaver somniferum HOM05D005594 ORTHO05D006403 3.8e-08 62.8 131 38.2
Peaxi162Scf01112g00131 Petunia axillaris HOM05D005594 ORTHO05D006403 3.8e-08 62.8 128 35.9
Atru.chr13.987 Acer truncatum HOM05D005594 ORTHO05D006403 5.0e-08 62.4 80 42.5
Glyma.06G098500 Glycine max HOM05D005594 ORTHO05D006403 5.0e-08 62.4 134 38.1
MD08G1202600 Malus domestica HOM05D005594 ORTHO05D006403 6.5e-08 62.0 114 41.2
MSTRG.24680 Avicennia marina HOM05D005594 ORTHO05D006403 8.5e-08 61.6 119 40.3
AL1G18120 Arabidopsis lyrata HOM05D005594 ORTHO05D006403 1.1e-07 61.2 130 39.2
Migut.N00274 Erythranthe guttata HOM05D005594 ORTHO05D006403 1.1e-07 61.2 130 37.7
DCAR_028088 Daucus carota HOM05D005594 ORTHO05D006403 1.4e-07 60.8 91 36.3
Cc10_g08520 Coffea canephora HOM05D005594 ORTHO05D006403 1.9e-07 60.5 132 34.8
AUR62019109 Chenopodium quinoa HOM05D005594 ORTHO05D006403 3.2e-07 59.7 105 37.1
Glyma.04G096700 Glycine max HOM05D005594 ORTHO05D006403 3.2e-07 59.7 130 36.2
TWI31G0793 Tripterygium wilfordii HOM05D005594 ORTHO05D006403 3.2e-07 59.7 121 37.2
unitig_26.g9553 Utricularia gibba HOM05D005594 ORTHO05D006403 3.2e-07 59.7 129 36.4
Thhalv10008245m.g Eutrema salsugineum HOM05D005594 ORTHO05D006403 4.2e-07 59.3 126 40.5
Mapoly0041s0093 Marchantia polymorpha HOM05D005056 ORTHO05D006403 4.2e-07 59.3 100 38.0
PGSC0003DMG400009352 Solanum tuberosum HOM05D005594 ORTHO05D006403 4.2e-07 59.3 71 46.5
Dinv42597 Davidia involucrata HOM05D005594 ORTHO05D006403 5.5e-07 58.9 118 37.3
Actinidia19620 Actinidia chinensis HOM05D005594 ORTHO05D006403 7.2e-07 58.5 132 36.4
ATR0767G044 Amborella trichopoda HOM05D005594 ORTHO05D006403 7.2e-07 58.5 125 35.2
Lj8A490G28 Lonicera japonica HOM05D005594 ORTHO05D006403 9.3e-07 58.2 122 38.5
Lj8A496G24 Lonicera japonica HOM05D005594 ORTHO05D006403 9.3e-07 58.2 122 38.5
Psat5g049560 Pisum sativum HOM05D005594 ORTHO05D006403 9.3e-07 58.2 128 32.8
Phvul.009G035100 Phaseolus vulgaris HOM05D005594 ORTHO05D006403 1.6e-06 57.4 132 34.1
SGA_v2.0_scaffold62G21352 Striga asiatica HOM05D000582 ORTHO05D006403 1.6e-06 57.4 129 35.7
VMungo1309G0327 Vigna mungo HOM05D005594 ORTHO05D006403 2.7e-06 56.6 127 33.1
Lsat_1_v5_gn_3_110060 Lactuca sativa HOM05D005594 ORTHO05D006403 3.6e-06 56.2 125 32.0
Lalb_Chr23g0269971 Lupinus albus HOM05D005594 ORTHO05D006403 3.6e-06 56.2 130 33.8
AUR62014367 Chenopodium quinoa HOM05D005594 ORTHO05D006403 4.6e-06 55.8 128 34.4
ClCG11G014680 Citrullus lanatus HOM05D005594 ORTHO05D006403 4.6e-06 55.8 64 48.4
Sed0022235 Sechium edule HOM05D005594 ORTHO05D006403 6.1e-06 55.5 112 32.1
BcaNung02661 Brassica carinata HOM05D005594 ORTHO05D006403 7.9e-06 55.1 116 37.9
FAN04G0064 Fragaria x ananassa HOM05D005594 ORTHO05D006403 7.9e-06 55.1 90 36.7
Lj4g0023762 Lotus japonicus HOM05D005594 ORTHO05D006403 7.9e-06 55.1 122 34.4


User provided reference genes

Program Settings