Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb306500 Zea mays HOM05D000459 ORTHO05D006117 3.3e-110 401.7 204 100.0
Zm00001eb155600 Zea mays HOM05D000459 ORTHO05D006117 2.3e-31 139.8 72 93.1
Os01g0703300 Oryza sativa ssp. japonica HOM05D000459 ORTHO05D006117 2.2e-26 123.2 71 84.5
Nn1g07748 Nelumbo nucifera HOM05D000459 ORTHO05D006117 3.8e-18 95.9 80 57.5
TAR629G2194 Trochodendron aralioides HOM05D000459 ORTHO05D006117 9.4e-17 91.3 80 56.2
Zm00001eb262880 Zea mays HOM05D000459 ORTHO05D006117 2.1e-16 90.1 46 93.5
COL.COLO4_07728 Corchorus olitorius HOM05D000459 ORTHO05D006117 1.4e-15 87.4 73 57.5
Sed0025760 Sechium edule HOM05D000459 ORTHO05D006117 1.4e-15 87.4 70 55.7
TAR627G0087 Trochodendron aralioides HOM05D000459 ORTHO05D006117 1.8e-15 87.0 70 58.6
Gohir.A01G093500 Gossypium hirsutum HOM05D000459 ORTHO05D006117 2.3e-15 86.7 73 56.2
LjContig00081g0000855 Lotus japonicus HOM05D000459 ORTHO05D006117 3.0e-15 86.3 63 58.7
THA.LOC104817714 Tarenaya hassleriana HOM05D000459 ORTHO05D006117 3.0e-15 86.3 73 56.2
Thecc.07G008200 Theobroma cacao HOM05D000459 ORTHO05D006117 3.0e-15 86.3 75 56.0
Duzib170G0325 Durio zibethinus HOM05D000459 ORTHO05D006117 4.0e-15 85.9 73 56.2
Eucgr.F02028 Eucalyptus grandis HOM05D000459 ORTHO05D006117 4.0e-15 85.9 74 56.8
Manes.15G057300 Manihot esculenta HOM05D000459 ORTHO05D006117 4.0e-15 85.9 73 57.5
Manes.03G143600 Manihot esculenta HOM05D000459 ORTHO05D006117 5.2e-15 85.5 75 58.7
TWI38G2121 Tripterygium wilfordii HOM05D000459 ORTHO05D006117 5.2e-15 85.5 70 58.6
TWI39G1098 Tripterygium wilfordii HOM05D000459 ORTHO05D006117 5.2e-15 85.5 70 58.6
HPP92_024240 Vanilla planifolia HOM05D000459 ORTHO05D006117 5.2e-15 85.5 71 62.0
GSVIVG01014737001 Vitis vinifera HOM05D000459 ORTHO05D006117 5.2e-15 85.5 63 60.3
Atru.chr2.3833 Acer truncatum HOM05D000459 ORTHO05D006117 6.7e-15 85.1 70 58.6
ATR0751G093 Amborella trichopoda HOM05D000459 ORTHO05D006117 6.7e-15 85.1 75 58.7
CiPaw.12G140400 Carya illinoinensis HOM05D000459 ORTHO05D006117 8.8e-15 84.7 73 54.8
Duzib213G0973 Durio zibethinus HOM05D000459 ORTHO05D006117 8.8e-15 84.7 75 54.7
Gohir.D01G078000 Gossypium hirsutum HOM05D000459 ORTHO05D006117 8.8e-15 84.7 73 54.8
Gorai.002G102600 Gossypium raimondii HOM05D000459 ORTHO05D006117 8.8e-15 84.7 73 54.8
vmacro11613 Vaccinium macrocarpon HOM05D000459 ORTHO05D006117 8.8e-15 84.7 71 56.3
AT5G55970 Arabidopsis thaliana HOM05D000459 ORTHO05D006117 1.2e-14 84.3 71 54.9
Ciclev10008862m.g Citrus clementina HOM05D000459 ORTHO05D006117 1.2e-14 84.3 56 67.9
PSO541G0478 Papaver somniferum HOM05D000459 ORTHO05D006117 1.2e-14 84.3 56 67.9
BraA10t43418Z Brassica rapa HOM05D000459 ORTHO05D006117 1.5e-14 84.0 71 53.5
Cfa021886 Carpinus fangiana HOM05D000459 ORTHO05D006117 1.5e-14 84.0 56 66.1
Haze_09861 Corylus avellana HOM05D000459 ORTHO05D006117 1.5e-14 84.0 56 66.1
QL08p003197 Quercus lobata HOM05D000459 ORTHO05D006117 1.5e-14 84.0 56 66.1
VMungo0647G0616 Vigna mungo HOM05D000459 ORTHO05D006117 1.5e-14 84.0 77 53.2
Sabra11G0088500 Salix brachista HOM05D000459 ORTHO05D006117 2.0e-14 83.6 82 51.2
THA.LOC104813456 Tarenaya hassleriana HOM05D000459 ORTHO05D006117 2.0e-14 83.6 78 52.6
AL8G31550 Arabidopsis lyrata HOM05D000459 ORTHO05D006117 2.6e-14 83.2 71 53.5
CARHR269340 Cardamine hirsuta HOM05D000459 ORTHO05D006117 2.6e-14 83.2 71 54.9
Cpa.g.sc12.110 Carica papaya HOM05D000459 ORTHO05D006117 2.6e-14 83.2 56 66.1
arahy.Tifrunner.gnm1.ann1.4EQU0E Arachis hypogaea HOM05D000459 ORTHO05D006117 3.3e-14 82.8 73 54.8
arahy.Tifrunner.gnm1.ann1.FRP7IX Arachis hypogaea HOM05D000459 ORTHO05D006117 3.3e-14 82.8 73 54.8
BcaB08g35963 Brassica carinata HOM05D000459 ORTHO05D006117 3.3e-14 82.8 71 53.5
A10p13200 Brassica napus HOM05D000459 ORTHO05D006117 3.3e-14 82.8 71 53.5
CSS0018132 Camellia sinensis var. sinensis HOM05D000459 ORTHO05D006117 3.3e-14 82.8 70 57.1
CSS0022326 Camellia sinensis var. sinensis HOM05D000459 ORTHO05D006117 3.3e-14 82.8 70 57.1
Carub.0008s1631 Capsella rubella HOM05D000459 ORTHO05D006117 3.3e-14 82.8 71 53.5
Thhalv10014037m.g Eutrema salsugineum HOM05D000459 ORTHO05D006117 3.3e-14 82.8 71 54.9
Gorai.013G150600 Gossypium raimondii HOM05D000459 ORTHO05D006117 3.3e-14 82.8 73 54.8
HanXRQChr11g0334351 Helianthus annuus HOM05D000459 ORTHO05D006117 3.3e-14 82.8 66 54.5
Psat2g006520 Pisum sativum HOM05D000459 ORTHO05D006117 3.3e-14 82.8 56 64.3
Cc05_g15260 Coffea canephora HOM05D000459 ORTHO05D006117 4.4e-14 82.4 70 54.3
MBI15_g38529_MAGBIO Magnolia biondii HOM05D000459 ORTHO05D006117 4.4e-14 82.4 56 62.5
Ca_06415_v3 Cicer arietinum L. HOM05D000459 ORTHO05D006117 5.7e-14 82.0 72 52.8
Potri.011G094800 Populus trichocarpa HOM05D000459 ORTHO05D006117 5.7e-14 82.0 85 50.6
arahy.Tifrunner.gnm1.ann1.1WFS8V Arachis hypogaea HOM05D000459 ORTHO05D006117 7.5e-14 81.6 85 47.1
arahy.Tifrunner.gnm1.ann1.XK4UQG Arachis hypogaea HOM05D000459 ORTHO05D006117 7.5e-14 81.6 85 47.1
A03p13740 Brassica napus HOM05D000459 ORTHO05D006117 7.5e-14 81.6 70 54.3
Lsat_1_v5_gn_7_116540 Lactuca sativa HOM05D000459 ORTHO05D006117 7.5e-14 81.6 54 63.0
PGR083G2092 Punica granatum HOM05D000459 ORTHO05D006117 7.5e-14 81.6 55 63.6
Sc03g0011560 Simmondsia chinensis HOM05D000459 ORTHO05D006117 7.5e-14 81.6 55 63.6
C09p46960 Brassica napus HOM05D000459 ORTHO05D006117 9.7e-14 81.3 71 53.5
BolC9t57544H Brassica oleracea HOM05D000459 ORTHO05D006117 9.7e-14 81.3 71 53.5
Glyma.02G302400 Glycine max HOM05D000459 ORTHO05D006117 9.7e-14 81.3 63 58.7
Glyma.14G011800 Glycine max HOM05D000459 ORTHO05D006117 9.7e-14 81.3 63 58.7
Gohir.D13G134300 Gossypium hirsutum HOM05D000459 ORTHO05D006117 9.7e-14 81.3 75 53.3
Medtr5g096410 Medicago truncatula HOM05D000459 ORTHO05D006117 9.7e-14 81.3 56 62.5
Aqoxy4G02245 Aquilegia oxysepala HOM05D000459 ORTHO05D006117 1.3e-13 80.9 56 62.5
Thhalv10025652m.g Eutrema salsugineum HOM05D000459 ORTHO05D006117 1.3e-13 80.9 72 51.4
Gohir.A13G131000 Gossypium hirsutum HOM05D000459 ORTHO05D006117 1.3e-13 80.9 73 53.4
Sp6g17820 Schrenkiella parvula HOM05D000459 ORTHO05D006117 1.3e-13 80.9 71 52.1
Sp7g24540 Schrenkiella parvula HOM05D000459 ORTHO05D006117 1.3e-13 80.9 72 51.4
Ah.03g142050 Amaranthus hybridus HOM05D000459 ORTHO05D006117 1.7e-13 80.5 70 55.7
CANSAT11G1670 Cannabis sativa HOM05D000459 ORTHO05D006117 1.7e-13 80.5 56 62.5
BcaC09g50639 Brassica carinata HOM05D000459 ORTHO05D006117 2.2e-13 80.1 73 52.1
C01p22610 Brassica napus HOM05D000459 ORTHO05D006117 2.2e-13 80.1 73 52.1
BolC1t02192H Brassica oleracea HOM05D000459 ORTHO05D006117 2.2e-13 80.1 73 52.1
CiPaw.11G206600 Carya illinoinensis HOM05D000459 ORTHO05D006117 2.2e-13 80.1 70 54.3
BcaC01g06398 Brassica carinata HOM05D000459 ORTHO05D006117 2.8e-13 79.7 70 52.9
A01p17820 Brassica napus HOM05D000459 ORTHO05D006117 2.8e-13 79.7 73 52.1
C03p16130 Brassica napus HOM05D000459 ORTHO05D006117 2.8e-13 79.7 70 52.9
BolC3t14038H Brassica oleracea HOM05D000459 ORTHO05D006117 2.8e-13 79.7 70 52.9
BraA01t01738Z Brassica rapa HOM05D000459 ORTHO05D006117 2.8e-13 79.7 73 52.1
Phvul.006G059224 Phaseolus vulgaris HOM05D000459 ORTHO05D006117 2.8e-13 79.7 72 54.2
Potri.001G371200 Populus trichocarpa HOM05D000459 ORTHO05D006117 2.8e-13 79.7 73 53.4
Hund23077 Selenicereus undatus HOM05D000459 ORTHO05D006117 2.8e-13 79.7 77 48.1
AT4G26580 Arabidopsis thaliana HOM05D000459 ORTHO05D006117 3.7e-13 79.3 73 53.4
VMungo0540G0262 Vigna mungo HOM05D000459 ORTHO05D006117 3.7e-13 79.3 72 54.2
AL7G26310 Arabidopsis lyrata HOM05D000459 ORTHO05D006117 4.8e-13 79.0 73 52.1
EL10Ac4g07538 Beta vulgaris HOM05D000459 ORTHO05D006117 4.8e-13 79.0 55 60.0
BraA03t10677Z Brassica rapa HOM05D000459 ORTHO05D006117 4.8e-13 79.0 70 52.9
Dinv10360 Davidia involucrata HOM05D000459 ORTHO05D006117 4.8e-13 79.0 81 54.3
TPR.G1258 Trifolium pratense HOM05D000459 ORTHO05D006117 4.8e-13 79.0 75 49.3
MSTRG.15807 Avicennia marina HOM05D000459 ORTHO05D006117 6.3e-13 78.6 72 54.2
ECA236G5088 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.3e-13 78.6 66 51.5
Carub.0007s1430 Capsella rubella HOM05D000459 ORTHO05D006117 8.2e-13 78.2 72 50.0
Lj6g0021176 Lotus japonicus HOM05D000459 ORTHO05D006117 8.2e-13 78.2 75 52.0
BcaNung02402 Brassica carinata HOM05D000459 ORTHO05D006117 1.1e-12 77.8 56 60.7
Peaxi162Scf00232g00026 Petunia axillaris HOM05D000459 ORTHO05D006117 1.1e-12 77.8 54 59.3
Lalb_Chr15g0082281 Lupinus albus HOM05D000459 ORTHO05D006117 1.4e-12 77.4 75 49.3
Nitab4.5_0000152g0420 Nicotiana tabacum HOM05D000459 ORTHO05D006117 1.4e-12 77.4 54 61.1
Sabra16G0243900 Salix brachista HOM05D000459 ORTHO05D006117 1.4e-12 77.4 73 50.7
Sed0022976 Sechium edule HOM05D000459 ORTHO05D006117 1.4e-12 77.4 73 52.1
Aa31LG3G11880 Aethionema arabicum HOM05D000459 ORTHO05D006117 1.8e-12 77.0 55 60.0
MSTRG.7014 Avicennia marina HOM05D000459 ORTHO05D006117 1.8e-12 77.0 71 47.9
MD11G1036700 Malus domestica HOM05D000459 ORTHO05D006117 1.8e-12 77.0 70 51.4
Nitab4.5_0003130g0080 Nicotiana tabacum HOM05D000459 ORTHO05D006117 1.8e-12 77.0 54 59.3
MELO3C024964.2 Cucumis melo HOM05D000459 ORTHO05D006117 2.4e-12 76.6 56 60.7
CsaV3_7G023870 Cucumis sativus L. HOM05D000459 ORTHO05D006117 2.4e-12 76.6 73 52.1
Prupe.6G028000 Prunus persica HOM05D000459 ORTHO05D006117 3.1e-12 76.3 56 58.9
CARHR234160 Cardamine hirsuta HOM05D000459 ORTHO05D006117 4.1e-12 75.9 70 50.0
ClCG09G021510 Citrullus lanatus HOM05D000459 ORTHO05D006117 4.1e-12 75.9 56 60.7
Lj8A180T95 Lonicera japonica HOM05D000459 ORTHO05D006117 4.1e-12 75.9 54 61.1
CsaV3_7G023880 Cucumis sativus L. HOM05D000459 ORTHO05D006117 7.0e-12 75.1 56 58.9
RcHm_v2.0_Chr5g0075651 Rosa chinensis HOM05D000459 ORTHO05D006117 7.0e-12 75.1 56 58.9
Lj1A894T47 Lonicera japonica HOM05D000459 ORTHO05D006117 9.1e-12 74.7 75 50.7
FAN25G1589 Fragaria x ananassa HOM05D000459 ORTHO05D006117 1.6e-11 73.9 56 58.9
Glyma.08G332300 Glycine max HOM05D000459 ORTHO05D006117 1.6e-11 73.9 56 57.1
Glyma.18G074600 Glycine max HOM05D000459 ORTHO05D006117 1.6e-11 73.9 56 57.1
MD03G1034800 Malus domestica HOM05D000459 ORTHO05D006117 1.6e-11 73.9 70 48.6
FvH4_3g42300 Fragaria vesca HOM05D000459 ORTHO05D006117 2.0e-11 73.6 56 58.9
FAN11G3959 Fragaria x ananassa HOM05D000459 ORTHO05D006117 2.0e-11 73.6 56 58.9
FAN16G1331 Fragaria x ananassa HOM05D000459 ORTHO05D006117 2.0e-11 73.6 56 58.9
Oeu017993.1 Olea europaea HOM05D000459 ORTHO05D006117 2.0e-11 73.6 53 56.6
Solyc07g065810.2 Solanum lycopersicum HOM05D000459 ORTHO05D006117 2.0e-11 73.6 70 45.7
Sopen07g034000 Solanum pennellii HOM05D000459 ORTHO05D006117 2.0e-11 73.6 70 45.7
FAN21G1085 Fragaria x ananassa HOM05D000459 ORTHO05D006117 3.5e-11 72.8 56 57.1
Peaxi162Scf00006g00529 Petunia axillaris HOM05D000459 ORTHO05D006117 3.5e-11 72.8 55 58.2
BcaC04g20176 Brassica carinata HOM05D000459 ORTHO05D006117 4.5e-11 72.4 52 61.5
Ca_12449_v3 Cicer arietinum L. HOM05D000459 ORTHO05D006117 4.5e-11 72.4 75 46.7
Migut.M01632 Erythranthe guttata HOM05D000459 ORTHO05D006117 4.5e-11 72.4 53 62.3
Nitab4.5_0000756g0070 Nicotiana tabacum HOM05D000459 ORTHO05D006117 4.5e-11 72.4 70 48.6
TPR.G400 Trifolium pratense HOM05D000459 ORTHO05D006117 5.9e-11 72.0 56 55.4
Nitab4.5_0000163g0060 Nicotiana tabacum HOM05D000459 ORTHO05D006117 7.7e-11 71.6 70 45.7
Psat5g167040 Pisum sativum HOM05D000459 ORTHO05D006117 7.7e-11 71.6 56 55.4
Hma1.2p1_1094F.1_g256370 Hydrangea macrophylla HOM05D000459 ORTHO05D006117 1.7e-10 70.5 54 55.6
Oeu049419.1 Olea europaea HOM05D000459 ORTHO05D006117 3.8e-10 69.3 53 56.6
BcaC01g06397 Brassica carinata HOM05D000459 ORTHO05D006117 5.0e-10 68.9 46 63.0
Sed0004744 Sechium edule HOM05D000459 ORTHO05D006117 8.5e-10 68.2 63 50.8
PGSC0003DMG400029790 Solanum tuberosum HOM05D000459 ORTHO05D006117 1.1e-09 67.8 56 55.4
Solyc12g015800.2 Solanum lycopersicum HOM05D000459 ORTHO05D006117 2.5e-09 66.6 56 53.6
Sopen12g007710 Solanum pennellii HOM05D000459 ORTHO05D006117 2.5e-09 66.6 56 53.6
DCAR_023775 Daucus carota HOM05D000033 ORTHO05D001317 9.4e-09 64.7 71 39.4
Zm00001eb007040 Zea mays HOM05D002663 ORTHO05D002988 2.7e-08 63.2 36 77.8


User provided reference genes

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