Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb305860 Zea mays HOM05D007002 ORTHO05D008602 6.0e-126 454.1 220 100.0
Os07g0414200 Oryza sativa ssp. japonica HOM05D007002 ORTHO05D008602 4.6e-70 268.5 211 62.6
CsaV3_2G003790 Cucumis sativus L. HOM05D007002 ORTHO05D008602 4.7e-54 215.3 200 51.5
arahy.Tifrunner.gnm1.ann1.APY3E0 Arachis hypogaea HOM05D007002 ORTHO05D008602 1.4e-53 213.8 204 52.0
Sabra13G0040800 Salix brachista HOM05D007002 ORTHO05D008602 3.0e-53 212.6 205 49.8
ClCG02G016960 Citrullus lanatus HOM05D007002 ORTHO05D008602 6.7e-53 211.5 200 51.5
Ah.04g163340 Amaranthus hybridus HOM05D007002 ORTHO05D008602 1.5e-52 210.3 209 48.3
Cc02_g09060 Coffea canephora HOM05D007002 ORTHO05D008602 7.4e-52 208.0 206 49.5
CSS0007351 Camellia sinensis var. sinensis HOM05D007002 ORTHO05D008602 1.3e-51 207.2 214 49.5
HanXRQChr11g0322841 Helianthus annuus HOM05D007002 ORTHO05D008602 2.2e-51 206.5 201 48.8
CANSAT54G1467 Cannabis sativa HOM05D007002 ORTHO05D008602 3.7e-51 205.7 207 47.8
Sed0009113 Sechium edule HOM05D007002 ORTHO05D008602 3.7e-51 205.7 199 49.2
GSVIVG01036211001 Vitis vinifera HOM05D007002 ORTHO05D008602 3.7e-51 205.7 202 51.5
arahy.Tifrunner.gnm1.ann1.DW51WY Arachis hypogaea HOM05D007002 ORTHO05D008602 4.8e-51 205.3 200 51.0
CiPaw.07G077800 Carya illinoinensis HOM05D007002 ORTHO05D008602 4.8e-51 205.3 200 52.0
FvH4_6g02330 Fragaria vesca HOM05D007002 ORTHO05D008602 6.3e-51 204.9 207 48.3
FAN14G1984 Fragaria x ananassa HOM05D007002 ORTHO05D008602 8.2e-51 204.5 207 48.3
Potri.013G044300 Populus trichocarpa HOM05D007002 ORTHO05D008602 2.4e-50 203.0 202 49.5
Gohir.A11G251100 Gossypium hirsutum HOM05D007002 ORTHO05D008602 7.0e-50 201.4 200 47.5
Nn1g02689 Nelumbo nucifera HOM05D007002 ORTHO05D008602 7.0e-50 201.4 204 48.5
Cfa006325 Carpinus fangiana HOM05D007002 ORTHO05D008602 9.1e-50 201.1 207 48.3
AUR62004881 Chenopodium quinoa HOM05D007002 ORTHO05D008602 9.1e-50 201.1 205 48.3
Haze_04463 Corylus avellana HOM05D007002 ORTHO05D008602 1.6e-49 200.3 206 50.0
CSS0049123 Camellia sinensis var. sinensis HOM05D007002 ORTHO05D008602 2.6e-49 199.5 212 48.6
AUR62001079 Chenopodium quinoa HOM05D007002 ORTHO05D008602 2.6e-49 199.5 205 48.8
Ciclev10021195m.g Citrus clementina HOM05D007002 ORTHO05D008602 2.6e-49 199.5 198 47.5
Aqoxy2G03608 Aquilegia oxysepala HOM05D007002 ORTHO05D008602 3.5e-49 199.1 204 45.1
Gorai.007G280200 Gossypium raimondii HOM05D007002 ORTHO05D008602 3.5e-49 199.1 200 46.5
MD04G1230000 Malus domestica HOM05D007002 ORTHO05D008602 5.9e-49 198.4 211 47.9
TPR.G10263 Trifolium pratense HOM05D007002 ORTHO05D008602 5.9e-49 198.4 207 48.8
Migut.F01549 Erythranthe guttata HOM05D007002 ORTHO05D008602 1.0e-48 197.6 212 46.7
FAN02G3625 Fragaria x ananassa HOM05D007002 ORTHO05D008602 1.0e-48 197.6 203 47.8
Phvul.L001632 Phaseolus vulgaris HOM05D007002 ORTHO05D008602 1.0e-48 197.6 203 48.8
Thecc.05G276500 Theobroma cacao HOM05D007002 ORTHO05D008602 1.0e-48 197.6 207 47.3
VMungo0720G3075 Vigna mungo HOM05D007002 ORTHO05D008602 1.0e-48 197.6 207 49.8
Duzib106G1322 Durio zibethinus HOM05D007002 ORTHO05D008602 1.3e-48 197.2 208 47.1
TWI12G1360 Tripterygium wilfordii HOM05D007002 ORTHO05D008602 1.3e-48 197.2 211 48.3
Psat6g142960 Pisum sativum HOM05D007002 ORTHO05D008602 1.7e-48 196.8 207 48.8
Hma1.2p1_0345F.1_g131170 Hydrangea macrophylla HOM05D007002 ORTHO05D008602 3.8e-48 195.7 210 46.7
SalBow6G1555 Salvia bowleyana HOM05D007002 ORTHO05D008602 3.8e-48 195.7 202 49.0
MSTRG.8094 Avicennia marina HOM05D007002 ORTHO05D008602 6.5e-48 194.9 210 47.6
Sc20g0000540 Simmondsia chinensis HOM05D007002 ORTHO05D008602 6.5e-48 194.9 203 49.3
Glyma.10G167200 Glycine max HOM05D007002 ORTHO05D008602 8.5e-48 194.5 206 46.6
PGR142G1318 Punica granatum HOM05D007002 ORTHO05D008602 8.5e-48 194.5 207 47.8
Lj5g0000328 Lotus japonicus HOM05D007002 ORTHO05D008602 1.1e-47 194.1 207 49.3
Rhsim05G0175600 Rhododendron simsii HOM05D007002 ORTHO05D008602 1.1e-47 194.1 230 43.5
Gohir.D11G261600 Gossypium hirsutum HOM05D007002 ORTHO05D008602 1.5e-47 193.7 208 46.2
Manes.09G149600 Manihot esculenta HOM05D007002 ORTHO05D008602 1.9e-47 193.4 207 48.8
CDE05G3366 Ceratophyllum demersum HOM05D007002 ORTHO05D008602 4.2e-47 192.2 208 45.7
FAN09G1583 Fragaria x ananassa HOM05D007002 ORTHO05D008602 4.2e-47 192.2 205 47.3
ECA238G2830 Erigeron canadensis HOM05D007002 ORTHO05D008602 7.2e-47 191.4 209 46.4
QL03p032095 Quercus lobata HOM05D007002 ORTHO05D008602 9.4e-47 191.0 213 48.8
COL.COLO4_15422 Corchorus olitorius HOM05D007002 ORTHO05D008602 1.2e-46 190.7 200 47.5
PSO063G1627 Papaver somniferum HOM05D007002 ORTHO05D008602 2.1e-46 189.9 206 45.1
PSO017G2142 Papaver somniferum HOM05D007002 ORTHO05D008602 3.6e-46 189.1 207 46.9
Atru.chr2.890 Acer truncatum HOM05D007002 ORTHO05D008602 4.7e-46 188.7 212 45.3
MELO3C004416.2 Cucumis melo HOM05D007002 ORTHO05D008602 4.7e-46 188.7 199 46.7
Hund06939 Selenicereus undatus HOM05D007002 ORTHO05D008602 4.7e-46 188.7 220 47.3
RcHm_v2.0_Chr3g0450091 Rosa chinensis HOM05D007002 ORTHO05D008602 1.8e-45 186.8 207 46.4
SGA_v2.0_scaffold62G21311 Striga asiatica HOM05D007002 ORTHO05D008602 3.0e-45 186.0 204 46.6
ATR0680G418 Amborella trichopoda HOM05D007002 ORTHO05D008602 6.7e-45 184.9 217 43.8
Lalb_Chr02g0149211 Lupinus albus HOM05D007002 ORTHO05D008602 6.7e-45 184.9 211 43.6
Lsat_1_v5_gn_2_107680 Lactuca sativa HOM05D007002 ORTHO05D008602 1.2e-44 184.1 221 42.5
DCAR_028380 Daucus carota HOM05D007002 ORTHO05D008602 1.5e-44 183.7 198 48.5
Peaxi162Scf00120g00412 Petunia axillaris HOM05D007002 ORTHO05D008602 9.7e-44 181.0 209 44.0
Prupe.6G348100 Prunus persica HOM05D007002 ORTHO05D008602 9.7e-44 181.0 168 50.6
Actinidia03304 Actinidia chinensis HOM05D007002 ORTHO05D008602 3.7e-43 179.1 257 38.5
Nitab4.5_0000856g0230 Nicotiana tabacum HOM05D007002 ORTHO05D008602 3.7e-43 179.1 214 44.9
arahy.Tifrunner.gnm1.ann1.LR4863 Arachis hypogaea HOM05D007002 ORTHO05D008602 4.8e-43 178.7 211 45.5
Solyc11g006130.2 Solanum lycopersicum HOM05D007002 ORTHO05D008602 1.1e-42 177.6 215 43.7
CAN.G1256.10 Capsicum annuum HOM05D007002 ORTHO05D008602 2.4e-42 176.4 217 41.9
BraA01t02842Z Brassica rapa HOM05D007002 ORTHO05D008602 4.1e-42 175.6 214 44.9
Sopen11g002050 Solanum pennellii HOM05D007002 ORTHO05D008602 5.3e-42 175.3 213 41.3
Oeu058336.2 Olea europaea HOM05D007002 ORTHO05D008602 7.0e-42 174.9 248 40.3
AT1G54650 Arabidopsis thaliana HOM05D007002 ORTHO05D008602 9.1e-42 174.5 204 46.6
THA.LOC104805807 Tarenaya hassleriana HOM05D007002 ORTHO05D008602 2.7e-41 172.9 224 45.5
Eucgr.B02134 Eucalyptus grandis HOM05D007002 ORTHO05D008602 3.5e-41 172.6 208 45.7
Medtr1g079800 Medicago truncatula HOM05D007002 ORTHO05D008602 3.5e-41 172.6 236 43.6
AL1G65080 Arabidopsis lyrata HOM05D007002 ORTHO05D008602 4.5e-41 172.2 204 44.6
BolC1t03414H Brassica oleracea HOM05D007002 ORTHO05D008602 4.5e-41 172.2 216 44.0
Aa31LG2G12120 Aethionema arabicum HOM05D007002 ORTHO05D008602 1.0e-40 171.0 199 44.7
A01p27070 Brassica napus HOM05D007002 ORTHO05D008602 1.0e-40 171.0 215 44.2
BcaC09g49617 Brassica carinata HOM05D007002 ORTHO05D008602 1.7e-40 170.2 216 43.1
Thhalv10023577m.g Eutrema salsugineum HOM05D007002 ORTHO05D008602 1.7e-40 170.2 225 43.1
SpUN0002_0110 Schrenkiella parvula HOM05D007002 ORTHO05D008602 2.2e-40 169.9 201 46.3
BcaB04g20138 Brassica carinata HOM05D007002 ORTHO05D008602 2.9e-40 169.5 202 44.1
C01p34450 Brassica napus HOM05D007002 ORTHO05D008602 2.9e-40 169.5 216 43.1
Carub.0002s0893 Capsella rubella HOM05D007002 ORTHO05D008602 5.0e-40 168.7 205 44.4
CARHR055790 Cardamine hirsuta HOM05D007002 ORTHO05D008602 5.0e-40 168.7 207 44.4
SEGI_16446 Sequoiadendron giganteum HOM05D007002 ORTHO05D008602 1.1e-39 167.5 228 38.6
FAN05G0162 Fragaria x ananassa HOM05D007002 ORTHO05D008602 7.2e-39 164.9 200 40.5
FAN14G0334 Fragaria x ananassa HOM05D007002 ORTHO05D008602 7.2e-39 164.9 201 44.3
Nitab4.5_0004928g0070 Nicotiana tabacum HOM05D007002 ORTHO05D008602 9.4e-39 164.5 221 42.1
vmacro20004 Vaccinium macrocarpon HOM05D007002 ORTHO05D008602 5.2e-37 158.7 309 32.4
AagrBONN_evm.TU.Sc2ySwM_117.599 Anthoceros agrestis HOM05D007002 ORTHO05D008602 1.3e-32 144.1 204 39.2
Mapoly0013s0147 Marchantia polymorpha HOM05D007002 ORTHO05D008602 1.5e-31 140.6 219 35.6
Lj2A39T65 Lonicera japonica HOM05D007002 ORTHO05D008602 3.0e-29 132.9 143 46.9
Hma1.2p1_0345F.1_g131180 Hydrangea macrophylla HOM05D007002 ORTHO05D008602 4.0e-29 132.5 139 47.5
Hma1.2p1_1181F.1_g264745 Hydrangea macrophylla HOM05D007002 ORTHO05D008602 8.8e-29 131.3 141 47.5
Pp3c26_7960 Physcomitrium patens HOM05D007002 ORTHO05D008602 4.1e-26 122.5 114 49.1
SMO353G0035 Selaginella moellendorffii HOM05D007002 ORTHO05D008602 3.3e-23 112.8 152 41.4
SMO203G0057 Selaginella moellendorffii HOM05D007002 ORTHO05D008602 2.1e-22 110.2 155 40.0
unitig_60.g25820 Utricularia gibba HOM05D007002 ORTHO05D008602 4.4e-20 102.4 86 58.1
SMO364G0434 Selaginella moellendorffii HOM05D007002 ORTHO05D008602 1.7e-16 90.5 162 36.4
SalBow6G6869 Salvia bowleyana HOM05D007002 ORTHO05D008602 2.3e-16 90.1 115 44.3
Dinv06983 Davidia involucrata HOM05D007002 ORTHO05D008602 1.9e-15 87.0 103 39.8
TAR362G0944 Trochodendron aralioides HOM05D007002 ORTHO05D008602 1.2e-14 84.3 100 43.0
TAR572G0001 Trochodendron aralioides HOM05D007002 ORTHO05D008602 2.8e-14 83.2 100 39.0
CBR_g24276 Chara braunii HOM05D000785 ORTHO05D000231 3.6e-14 82.8 121 38.0
Cpa.g.sc2388.3 Carica papaya HOM05D007002 ORTHO05D008602 4.6e-09 65.9 71 46.5
PGR119G1597 Punica granatum HOM05D001920 ORTHO05D004895 1.3e-08 64.3 70 48.6
FAN17G0300 Fragaria x ananassa HOM05D007002 ORTHO05D008602 3.0e-08 63.2 44 59.1
Zm00001eb003510 Zea mays HOM05D001920 ORTHO05D004895 1.5e-07 60.8 100 39.0
HPP92_005010 Vanilla planifolia HOM05D001920 ORTHO05D004895 3.3e-07 59.7 104 33.7
Gohir.D06G085100 Gossypium hirsutum HOM05D001920 ORTHO05D004895 4.3e-07 59.3 98 33.7
Gorai.010G098400 Gossypium raimondii HOM05D001920 ORTHO05D004895 4.3e-07 59.3 98 33.7
Cre05.g239050 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D004895 7.3e-07 58.5 103 35.9
COL.COLO4_30718 Corchorus olitorius HOM05D001920 ORTHO05D004895 7.3e-07 58.5 138 29.0
Cre16.g668100 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D008602 9.5e-07 58.2 86 39.5
Sp4g06300 Schrenkiella parvula HOM05D001920 ORTHO05D004895 1.2e-06 57.8 137 29.2
CANSAT25G1922 Cannabis sativa HOM05D001920 ORTHO05D004895 2.1e-06 57.0 102 31.4
Hma1.2p1_0496F.1_g166080 Hydrangea macrophylla HOM05D001920 ORTHO05D004895 2.1e-06 57.0 107 32.7
Lsat_1_v5_gn_4_71781 Lactuca sativa HOM05D001920 ORTHO05D004895 2.1e-06 57.0 98 33.7
Psat6g021640 Pisum sativum HOM05D001920 ORTHO05D004895 2.1e-06 57.0 100 35.0
Aa31LG5G9590 Aethionema arabicum HOM05D001920 ORTHO05D004895 2.8e-06 56.6 82 36.6
Glyma.14G097800 Glycine max HOM05D001920 ORTHO05D004895 2.8e-06 56.6 70 41.4
Lalb_Chr14g0366411 Lupinus albus HOM05D001920 ORTHO05D004895 2.8e-06 56.6 96 33.3
Lalb_Chr24g0399761 Lupinus albus HOM05D001920 ORTHO05D004895 2.8e-06 56.6 70 41.4
Nn8g38776 Nelumbo nucifera HOM05D001920 ORTHO05D004895 2.8e-06 56.6 96 34.4
Oeu018622.1 Olea europaea HOM05D001920 ORTHO05D004895 2.8e-06 56.6 100 34.0
PRCOL_00003735 Prasinoderma coloniale HOM05D006449 ORTHO05D007995 2.8e-06 56.6 52 50.0
CARHR115020 Cardamine hirsuta HOM05D001920 ORTHO05D004895 3.6e-06 56.2 103 34.0
Sc23g0005760 Simmondsia chinensis HOM05D001920 ORTHO05D004895 3.6e-06 56.2 98 34.7
Sopen08g018250 Solanum pennellii HOM05D001920 ORTHO05D004895 3.6e-06 56.2 98 34.7
Gohir.A06G085800 Gossypium hirsutum HOM05D001920 ORTHO05D004895 4.7e-06 55.8 102 34.3
Hund03323 Selenicereus undatus HOM05D001920 ORTHO05D004895 4.7e-06 55.8 98 33.7
A04p20270 Brassica napus HOM05D001920 ORTHO05D004895 6.2e-06 55.5 82 36.6
C04p55980 Brassica napus HOM05D001920 ORTHO05D004895 6.2e-06 55.5 82 36.6
MELO3C016884.2 Cucumis melo HOM05D001920 ORTHO05D004895 6.2e-06 55.5 98 30.6
Medtr1g015770 Medicago truncatula HOM05D001920 ORTHO05D004895 6.2e-06 55.5 98 32.7
Solyc08g062770.3 Solanum lycopersicum HOM05D001920 ORTHO05D004895 6.2e-06 55.5 98 34.7
Thecc.06G115800 Theobroma cacao HOM05D001920 ORTHO05D004895 6.2e-06 55.5 100 34.0
Ca_13119_v3 Cicer arietinum L. HOM05D001920 ORTHO05D004895 8.1e-06 55.1 98 32.7
Phvul.001G092600 Phaseolus vulgaris HOM05D001920 ORTHO05D004895 8.1e-06 55.1 70 41.4
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 8.1e-06 55.1 66 42.4
Sed0026712 Sechium edule HOM05D001920 ORTHO05D004895 8.1e-06 55.1 98 31.6


User provided reference genes

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