Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb305470 Zea mays HOM05D003787 ORTHO05D001736 1.0e-150 537.0 327 100.0
Os07g0298100 Oryza sativa ssp. japonica HOM05D003787 ORTHO05D001736 3.0e-49 199.9 354 46.9
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 2.9e-20 103.6 308 35.7
Nn3g17457 Nelumbo nucifera HOM05D003787 ORTHO05D001736 5.5e-19 99.4 327 33.9
CiPaw.05G124800 Carya illinoinensis HOM05D003787 ORTHO05D001736 1.1e-14 85.1 166 42.2
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 1.8e-14 84.3 215 36.3
Atru.chr9.567 Acer truncatum HOM05D006637 ORTHO05D001736 2.4e-14 84.0 280 33.6
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 2.4e-14 84.0 215 36.7
MBI19_g14007_MAGBIO Magnolia biondii HOM05D006637 ORTHO05D001736 3.1e-14 83.6 316 31.6
TAR371G0370 Trochodendron aralioides HOM05D006637 ORTHO05D001736 3.1e-14 83.6 254 35.8
ClCG06G015610 Citrullus lanatus HOM05D006637 ORTHO05D001736 7.0e-14 82.4 209 36.4
GSVIVG01012223001 Vitis vinifera HOM05D003787 ORTHO05D001736 9.1e-14 82.0 204 39.2
MELO3C017227.2 Cucumis melo HOM05D006637 ORTHO05D001736 2.0e-13 80.9 285 35.1
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 3.5e-13 80.1 271 32.1
Aqoxy3G00509 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 3.5e-13 80.1 184 38.0
TAR622G0628 Trochodendron aralioides HOM05D003787 ORTHO05D001736 3.5e-13 80.1 266 34.2
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 4.5e-13 79.7 286 32.5
Sed0008450 Sechium edule HOM05D006637 ORTHO05D001736 7.7e-13 79.0 263 31.2
HPP92_011441 Vanilla planifolia HOM05D003787 ORTHO05D001736 2.9e-12 77.0 316 31.6
Thecc.03G102400 Theobroma cacao HOM05D006637 ORTHO05D001736 3.8e-12 76.6 295 34.2
Lj5C102T22 Lonicera japonica HOM05D006637 ORTHO05D001736 5.0e-12 76.3 223 33.2
CsaV3_1G002960 Cucumis sativus L. HOM05D006637 ORTHO05D001736 8.6e-12 75.5 267 35.2
Prupe.5G205600 Prunus persica HOM05D006637 ORTHO05D001736 1.1e-11 75.1 266 33.8
ATR0177G031 Amborella trichopoda HOM05D003787 ORTHO05D001736 1.5e-11 74.7 200 36.5
Prupe.1G287500 Prunus persica HOM05D003787 ORTHO05D001736 1.5e-11 74.7 244 35.7
Haze_14428 Corylus avellana HOM05D003787 ORTHO05D001736 3.3e-11 73.6 183 37.7
HPP92_003197 Vanilla planifolia HOM05D003787 ORTHO05D001736 3.3e-11 73.6 290 30.0
Aqoxy3G03685 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 4.2e-11 73.2 199 38.2
MD14G1212300 Malus domestica HOM05D006637 ORTHO05D001736 5.6e-11 72.8 324 31.2
Sabra10G0120000 Salix brachista HOM05D003787 ORTHO05D001736 5.6e-11 72.8 110 50.0
Potri.012G061700 Populus trichocarpa HOM05D006637 ORTHO05D001736 7.2e-11 72.4 258 39.9
Duzib068G0311 Durio zibethinus HOM05D006637 ORTHO05D001736 9.5e-11 72.0 292 32.2
Duzib205G1030 Durio zibethinus HOM05D006637 ORTHO05D001736 1.2e-10 71.6 262 30.9
CiPaw.11G054000 Carya illinoinensis HOM05D006637 ORTHO05D001736 1.6e-10 71.2 271 31.4
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.6e-10 71.2 261 34.5
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 2.1e-10 70.9 190 37.4
SGA_v2.0_scaffold154G37113 Striga asiatica HOM05D003787 ORTHO05D001736 2.1e-10 70.9 105 46.7
PSO017G1216 Papaver somniferum HOM05D006637 ORTHO05D001736 2.8e-10 70.5 73 57.5
PSO478G3423 Papaver somniferum HOM05D006637 ORTHO05D001736 2.8e-10 70.5 73 57.5
Thecc.02G330000 Theobroma cacao HOM05D003787 ORTHO05D001736 2.8e-10 70.5 72 62.5
TAR374G1256 Trochodendron aralioides HOM05D003787 ORTHO05D001736 2.8e-10 70.5 174 43.7
TAR629G2847 Trochodendron aralioides HOM05D003787 ORTHO05D001736 2.8e-10 70.5 254 36.2
Potri.008G096300 Populus trichocarpa HOM05D003787 ORTHO05D001736 4.7e-10 69.7 75 60.0
QL10p019649 Quercus lobata HOM05D006637 ORTHO05D001736 6.1e-10 69.3 208 32.2
PGSC0003DMG400024635 Solanum tuberosum HOM05D006637 ORTHO05D001736 6.1e-10 69.3 296 30.7
CAN.G1228.21 Capsicum annuum HOM05D006637 ORTHO05D001736 8.0e-10 68.9 327 30.3
Cfa007670 Carpinus fangiana HOM05D003787 ORTHO05D001736 8.0e-10 68.9 268 31.0
Gohir.A12G182900 Gossypium hirsutum HOM05D006637 ORTHO05D001736 8.0e-10 68.9 265 31.7
MD06G1225400 Malus domestica HOM05D006637 ORTHO05D001736 8.0e-10 68.9 298 33.6
HPP92_007004 Vanilla planifolia HOM05D003787 ORTHO05D001736 8.0e-10 68.9 125 42.4
MD16G1060800 Malus domestica HOM05D003787 ORTHO05D001736 1.4e-09 68.2 235 34.0
Potri.017G094300 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.4e-09 68.2 54 64.8
RcHm_v2.0_Chr7g0183151 Rosa chinensis HOM05D006637 ORTHO05D001736 1.4e-09 68.2 309 28.2
CDE02G2765 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 1.8e-09 67.8 210 34.3
Gorai.008G199400 Gossypium raimondii HOM05D006637 ORTHO05D001736 1.8e-09 67.8 265 32.1
GSVIVG01007850001 Vitis vinifera HOM05D006637 ORTHO05D001736 1.8e-09 67.8 247 32.8
Duzib251G0768 Durio zibethinus HOM05D003787 ORTHO05D001736 2.3e-09 67.4 108 50.0
Gohir.D12G186000 Gossypium hirsutum HOM05D006637 ORTHO05D001736 2.3e-09 67.4 265 32.1
QL03p074082 Quercus lobata HOM05D003787 ORTHO05D001736 2.3e-09 67.4 97 47.4
MELO3C012154.2 Cucumis melo HOM05D003787 ORTHO05D001736 3.0e-09 67.0 205 38.0
Oeu044877.1 Olea europaea HOM05D006637 ORTHO05D001736 3.0e-09 67.0 170 38.8
SGA_v2.0_scaffold28G11749 Striga asiatica HOM05D006637 ORTHO05D001736 3.0e-09 67.0 215 33.5
Cpa.g.sc14.178 Carica papaya HOM05D003787 ORTHO05D001736 4.0e-09 66.6 54 64.8
TWI81G0402 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 4.0e-09 66.6 302 34.8
Potri.015G057200 Populus trichocarpa HOM05D006637 ORTHO05D001736 5.2e-09 66.2 255 31.8
Sabra08G0072600 Salix brachista HOM05D003787 ORTHO05D001736 5.2e-09 66.2 180 37.8
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 6.8e-09 65.9 277 30.7
ClCG05G023700 Citrullus lanatus HOM05D003787 ORTHO05D001736 6.8e-09 65.9 171 38.0
SGA_v2.0_scaffold52G19142 Striga asiatica HOM05D003787 ORTHO05D001736 6.8e-09 65.9 199 34.7
CANSAT64G2286 Cannabis sativa HOM05D003787 ORTHO05D001736 8.9e-09 65.5 76 51.3
Sabra12G0044700 Salix brachista HOM05D006637 ORTHO05D001736 8.9e-09 65.5 241 36.5
Sed0011679 Sechium edule HOM05D003787 ORTHO05D001736 8.9e-09 65.5 235 32.8
Gorai.007G039500 Gossypium raimondii HOM05D006637 ORTHO05D001736 1.2e-08 65.1 245 33.5
Rhsim10G0049700 Rhododendron simsii HOM05D003787 ORTHO05D001736 1.2e-08 65.1 284 29.2
PGR119G1736 Punica granatum HOM05D003787 ORTHO05D001736 1.5e-08 64.7 201 37.3
SHI15724 Sapria himalayana HOM05D003787 ORTHO05D001736 1.5e-08 64.7 115 48.7
vmacro18147 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 1.5e-08 64.7 268 32.1
Duzib268G1106 Durio zibethinus HOM05D003787 ORTHO05D001736 2.0e-08 64.3 90 53.3
Sed0021860 Sechium edule HOM05D006637 ORTHO05D001736 2.0e-08 64.3 265 31.3
TPR.G10000 Trifolium pratense HOM05D003787 ORTHO05D001736 2.0e-08 64.3 75 56.0
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 2.0e-08 64.3 214 36.0
Haze_07733 Corylus avellana HOM05D006637 ORTHO05D001736 2.6e-08 63.9 72 52.8
Gohir.D03G096675 Gossypium hirsutum HOM05D006637 ORTHO05D001736 2.6e-08 63.9 184 33.7
Gorai.003G101400 Gossypium raimondii HOM05D006637 ORTHO05D001736 2.6e-08 63.9 178 32.6
PGR083G0945 Punica granatum HOM05D006637 ORTHO05D001736 2.6e-08 63.9 325 28.9
CDE04G2454 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 3.4e-08 63.5 73 56.2
Potri.004G120400 Populus trichocarpa HOM05D003787 ORTHO05D001736 3.4e-08 63.5 54 61.1
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 3.4e-08 63.5 280 28.2
Migut.H00622 Erythranthe guttata HOM05D003787 ORTHO05D001736 4.4e-08 63.2 77 48.1
Cc07_g04250 Coffea canephora HOM05D003787 ORTHO05D001736 5.7e-08 62.8 281 31.7
COL.COLO4_06852 Corchorus olitorius HOM05D006637 ORTHO05D001736 5.7e-08 62.8 201 34.8
ECA238G2630 Erigeron canadensis HOM05D003787 ORTHO05D001736 5.7e-08 62.8 273 30.4
Migut.K01274 Erythranthe guttata HOM05D003787 ORTHO05D001736 5.7e-08 62.8 96 42.7
Lalb_Chr06g0174951 Lupinus albus HOM05D003787 ORTHO05D001736 5.7e-08 62.8 93 47.3
Sabra04G0069600 Salix brachista HOM05D003787 ORTHO05D001736 5.7e-08 62.8 80 48.8
TWI15G0882 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 7.5e-08 62.4 336 27.4
Ah.02g126850 Amaranthus hybridus HOM05D003787 ORTHO05D001736 9.8e-08 62.0 75 52.0
Duzib264G1237 Durio zibethinus HOM05D003787 ORTHO05D001736 9.8e-08 62.0 77 51.9
Rhsim08G0075000 Rhododendron simsii HOM05D003787 ORTHO05D001736 9.8e-08 62.0 315 28.9
Sabra17G0083100 Salix brachista HOM05D003787 ORTHO05D001736 9.8e-08 62.0 310 29.7
Sopen02g033550 Solanum pennellii HOM05D003787 ORTHO05D001736 9.8e-08 62.0 74 52.7
CANSAT64G1049 Cannabis sativa HOM05D003787 ORTHO05D001736 1.3e-07 61.6 54 59.3
Gohir.D11G036700 Gossypium hirsutum HOM05D006637 ORTHO05D001736 1.3e-07 61.6 245 32.7
Thecc.04G095900 Theobroma cacao HOM05D003787 ORTHO05D001736 1.3e-07 61.6 282 31.2
vmacro16493 Vaccinium macrocarpon HOM05D006637 ORTHO05D001736 1.3e-07 61.6 205 35.6
COL.COLO4_27878 Corchorus olitorius HOM05D003787 ORTHO05D001736 1.7e-07 61.2 87 52.9
Migut.L01187 Erythranthe guttata HOM05D003787 ORTHO05D001736 1.7e-07 61.2 98 48.0
Gohir.A03G070200 Gossypium hirsutum HOM05D006637 ORTHO05D001736 2.2e-07 60.8 184 33.7
Lalb_Chr21g0318351 Lupinus albus HOM05D003787 ORTHO05D001736 2.2e-07 60.8 54 61.1
SGA_v2.0_scaffold148G36413 Striga asiatica HOM05D003787 ORTHO05D001736 2.2e-07 60.8 54 57.4
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 2.9e-07 60.5 135 40.7
Dinv22776 Davidia involucrata HOM05D006637 ORTHO05D001736 2.9e-07 60.5 176 36.9
SGA_v2.0_scaffold36G14463 Striga asiatica HOM05D003787 ORTHO05D001736 2.9e-07 60.5 155 33.5
Solyc03g115060.3 Solanum lycopersicum HOM05D006637 ORTHO05D001736 3.7e-07 60.1 290 26.6
DCAR_024124 Daucus carota HOM05D003787 ORTHO05D001736 4.9e-07 59.7 250 30.4
Lju41C3T13 Lonicera japonica HOM05D003787 ORTHO05D001736 4.9e-07 59.7 280 30.7
Psat2g130920 Pisum sativum HOM05D014318 ORTHO05D001736 4.9e-07 59.7 66 50.0
DCAR_025433 Daucus carota HOM05D003787 ORTHO05D001736 6.4e-07 59.3 265 28.3
Lalb_Chr10g0098891 Lupinus albus HOM05D014318 ORTHO05D001736 6.4e-07 59.3 231 30.7
MD13G1062500 Malus domestica HOM05D003787 ORTHO05D001736 6.4e-07 59.3 229 31.9
Sed0025283 Sechium edule HOM05D003787 ORTHO05D001736 6.4e-07 59.3 193 33.7
Sopen03g034130 Solanum pennellii HOM05D006637 ORTHO05D001736 6.4e-07 59.3 285 28.8
AL5G13410 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 8.3e-07 58.9 71 50.7
CiPaw.04G055500 Carya illinoinensis HOM05D003787 ORTHO05D001736 8.3e-07 58.9 188 36.2
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 8.3e-07 58.9 108 38.9
Glyma.19G030300 Glycine max HOM05D003787 ORTHO05D001736 8.3e-07 58.9 73 52.1
ATR1101G066 Amborella trichopoda HOM05D003787 ORTHO05D001736 1.1e-06 58.5 63 50.8
ATR1128G053 Amborella trichopoda HOM05D003787 ORTHO05D001736 1.1e-06 58.5 82 46.3
Cc00_g04710 Coffea canephora HOM05D006637 ORTHO05D001736 1.1e-06 58.5 168 33.9
PGSC0003DMG400001359 Solanum tuberosum HOM05D003787 ORTHO05D001736 1.1e-06 58.5 74 51.4
Actinidia04823 Actinidia chinensis HOM05D006637 ORTHO05D001736 1.4e-06 58.2 124 42.7
A09p24510 Brassica napus HOM05D003787 ORTHO05D001736 1.4e-06 58.2 193 34.2
CSS0036361 Camellia sinensis var. sinensis HOM05D006637 ORTHO05D001736 1.4e-06 58.2 158 36.1
CiPaw.03G088400 Carya illinoinensis HOM05D003787 ORTHO05D001736 1.4e-06 58.2 224 32.6
Ciclev10023416m.g Citrus clementina HOM05D006637 ORTHO05D001736 1.4e-06 58.2 286 30.4
FvH4_4g29990 Fragaria vesca HOM05D003787 ORTHO05D001736 1.4e-06 58.2 247 29.6
Solyc02g088840.3 Solanum lycopersicum HOM05D003787 ORTHO05D001736 1.4e-06 58.2 74 51.4
arahy.Tifrunner.gnm1.ann1.MG99FN Arachis hypogaea HOM05D003787 ORTHO05D001736 1.8e-06 57.8 67 49.3
arahy.Tifrunner.gnm1.ann1.NP9FW8 Arachis hypogaea HOM05D003787 ORTHO05D001736 1.8e-06 57.8 67 49.3
Glyma.13G056300 Glycine max HOM05D003787 ORTHO05D001736 1.8e-06 57.8 73 53.4
Gohir.D04G043300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 1.8e-06 57.8 110 40.0
Oeu007068.1 Olea europaea HOM05D003787 ORTHO05D001736 1.8e-06 57.8 284 29.6
VMungo0464G0106 Vigna mungo HOM05D003787 ORTHO05D001736 1.8e-06 57.8 203 34.5
BraA09t38045Z Brassica rapa HOM05D003787 ORTHO05D001736 2.4e-06 57.4 187 33.2
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 2.4e-06 57.4 87 50.6
Gorai.012G048600 Gossypium raimondii HOM05D003787 ORTHO05D001736 2.4e-06 57.4 110 40.0
Lj2g0021607 Lotus japonicus HOM05D003787 ORTHO05D001736 2.4e-06 57.4 109 40.4
MD17G1059900 Malus domestica HOM05D003787 ORTHO05D001736 2.4e-06 57.4 54 57.4
Manes.02G055200 Manihot esculenta HOM05D003787 ORTHO05D001736 2.4e-06 57.4 293 27.6
Medtr6g015240 Medicago truncatula HOM05D003787 ORTHO05D001736 2.4e-06 57.4 115 40.0
Nitab4.5_0002960g0050 Nicotiana tabacum HOM05D003787 ORTHO05D001736 2.4e-06 57.4 75 48.0
Prupe.3G254700 Prunus persica HOM05D003787 ORTHO05D001736 2.4e-06 57.4 67 55.2
SalBow1G3309 Salvia bowleyana HOM05D003787 ORTHO05D001736 2.4e-06 57.4 293 29.4
THA.LOC104801821 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 2.4e-06 57.4 78 52.6
Atru.chr8.428 Acer truncatum HOM05D003787 ORTHO05D001736 3.2e-06 57.0 206 30.1
ATR1101G105 Amborella trichopoda HOM05D003787 ORTHO05D001736 3.2e-06 57.0 34 73.5
Cpa.g.sc1.128 Carica papaya HOM05D003787 ORTHO05D001736 3.2e-06 57.0 97 45.4
CDE05G3272 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 4.1e-06 56.6 308 25.6
Haze_11903 Corylus avellana HOM05D003787 ORTHO05D001736 4.1e-06 56.6 106 40.6
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 4.1e-06 56.6 108 38.0
Gohir.A05G372300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 4.1e-06 56.6 110 40.0
Manes.14G086000 Manihot esculenta HOM05D006637 ORTHO05D001736 4.1e-06 56.6 289 31.1
Rhsim12G0148600 Rhododendron simsii HOM05D006637 ORTHO05D001736 4.1e-06 56.6 250 35.2
SHI06685 Sapria himalayana HOM05D003787 ORTHO05D001736 4.1e-06 56.6 51 56.9
Sc14g0007980 Simmondsia chinensis HOM05D003787 ORTHO05D001736 4.1e-06 56.6 176 38.6
FAN22G0001 Fragaria x ananassa HOM05D003787 ORTHO05D001736 5.4e-06 56.2 107 36.4
Peaxi162Scf00166g00047 Petunia axillaris HOM05D003787 ORTHO05D001736 5.4e-06 56.2 84 44.0
Sp2g14470 Schrenkiella parvula HOM05D003787 ORTHO05D001736 5.4e-06 56.2 89 48.3
vmacro10428 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 5.4e-06 56.2 99 47.5
Cpa.g.sc10.158 Carica papaya HOM05D006637 ORTHO05D001736 7.0e-06 55.8 352 27.6
ClCG11G004790 Citrullus lanatus HOM05D003787 ORTHO05D001736 7.0e-06 55.8 201 31.3
Dinv17418 Davidia involucrata HOM05D006637 ORTHO05D001736 7.0e-06 55.8 265 30.9
MD09G1067000 Malus domestica HOM05D003787 ORTHO05D001736 7.0e-06 55.8 89 50.6
SalBow1G5677 Salvia bowleyana HOM05D003787 ORTHO05D001736 7.0e-06 55.8 293 29.0
AUR62008536 Chenopodium quinoa HOM05D006637 ORTHO05D001736 9.2e-06 55.5 128 43.8
Ca_04304_v3 Cicer arietinum L. HOM05D003787 ORTHO05D001736 9.2e-06 55.5 85 49.4
CsaV3_5G033340 Cucumis sativus L. HOM05D003787 ORTHO05D001736 9.2e-06 55.5 212 34.0
Duzib187G0666 Durio zibethinus HOM05D003787 ORTHO05D001736 9.2e-06 55.5 107 38.3
Hma1.2p1_0566F.1_g179820 Hydrangea macrophylla HOM05D003787 ORTHO05D001736 9.2e-06 55.5 111 43.2
Lsat_1_v5_gn_2_90140 Lactuca sativa HOM05D003787 ORTHO05D001736 9.2e-06 55.5 283 32.9
Manes.01G096200 Manihot esculenta HOM05D003787 ORTHO05D001736 9.2e-06 55.5 54 59.3


User provided reference genes

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