Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb304680 Zea mays HOM05D005298 ORTHO05D008015 2.6e-164 582.0 298 100.0
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 8.5e-160 567.0 297 98.3
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 2.1e-126 456.1 302 77.5
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 1.0e-88 330.9 285 59.6
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 5.7e-87 325.1 285 56.8
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 2.6e-84 316.2 285 55.4
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 2.2e-83 313.2 285 56.5
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 5.0e-83 312.0 287 54.7
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 1.1e-82 310.8 288 55.9
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 1.1e-82 310.8 284 52.8
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 2.5e-82 309.7 285 57.2
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 2.5e-82 309.7 285 53.3
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 3.2e-82 309.3 286 55.2
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 4.2e-82 308.9 287 53.7
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 4.2e-82 308.9 285 55.8
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 9.3e-82 307.8 284 54.2
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 7.9e-81 304.7 286 54.5
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 2.3e-80 303.1 298 54.0
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 3.9e-80 302.4 286 54.9
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 5.1e-80 302.0 287 54.7
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 1.5e-79 300.4 287 54.4
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 1.9e-79 300.1 287 54.4
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 1.9e-79 300.1 286 54.5
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 2.5e-79 299.7 329 49.8
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 3.3e-79 299.3 285 54.4
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 4.3e-79 298.9 283 55.1
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 7.4e-79 298.1 299 53.8
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 1.3e-78 297.4 285 54.7
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 8.2e-78 294.7 284 54.2
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 1.1e-77 294.3 285 54.4
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 1.4e-77 293.9 292 53.1
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 1.8e-77 293.5 286 52.8
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 2.4e-77 293.1 303 52.1
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 2.4e-77 293.1 285 52.6
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 9.0e-77 291.2 298 50.0
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 9.0e-77 291.2 284 53.5
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 1.5e-76 290.4 289 54.0
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 2.0e-76 290.0 286 53.8
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 3.4e-76 289.3 293 49.5
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 7.7e-76 288.1 298 49.7
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 1.0e-75 287.7 286 53.1
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 1.7e-75 287.0 286 52.8
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 1.7e-75 287.0 277 53.1
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.7e-75 287.0 312 50.3
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 2.9e-75 286.2 288 51.0
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 3.8e-75 285.8 297 51.5
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 6.5e-75 285.0 295 51.5
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 2.5e-74 283.1 293 48.1
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 3.2e-74 282.7 286 51.4
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 1.6e-73 280.4 285 50.5
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 2.7e-73 279.6 285 49.8
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 3.6e-73 279.3 286 52.4
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 3.6e-73 279.3 285 51.2
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 6.1e-73 278.5 285 51.2
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 3.0e-72 276.2 285 51.6
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 3.0e-72 276.2 290 52.4
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 3.3e-71 272.7 287 52.3
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 4.3e-71 272.3 287 51.9
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 5.7e-71 271.9 285 50.9
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 5.7e-71 271.9 285 50.5
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 7.4e-71 271.6 287 51.2
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 7.4e-71 271.6 287 51.9
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 1.7e-70 270.4 287 51.9
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 3.7e-70 269.2 289 48.8
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 8.2e-70 268.1 288 50.3
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 1.8e-69 266.9 285 48.1
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 2.4e-69 266.5 287 51.2
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 3.1e-69 266.2 287 50.9
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 5.3e-69 265.4 283 52.7
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 5.3e-69 265.4 283 52.7
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 5.3e-69 265.4 288 52.1
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 6.9e-69 265.0 287 50.9
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 9.1e-69 264.6 283 52.7
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 2.0e-68 263.5 288 51.0
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 3.4e-68 262.7 246 54.9
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 4.5e-68 262.3 287 50.2
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 4.5e-68 262.3 284 48.2
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 2.9e-67 259.6 286 48.6
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 1.4e-64 250.8 297 49.2
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 3.9e-64 249.2 291 47.4
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 3.3e-63 246.1 285 46.7
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 8.2e-62 241.5 285 44.2
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 2.4e-61 240.0 282 48.2
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 1.1e-58 231.1 294 45.6
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 5.5e-58 228.8 232 53.4
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 7.2e-58 228.4 220 53.6
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.6e-57 227.3 236 52.5
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.7e-54 217.2 298 38.3
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.7e-54 217.2 298 38.3
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 2.0e-52 210.3 290 39.0
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 2.2e-51 206.8 285 41.4
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.7e-49 199.9 298 38.3
Cc03_g00330 Coffea canephora HOM05D005298 ORTHO05D008015 1.1e-42 177.9 337 35.9
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 3.7e-38 162.9 316 33.9
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 9.2e-37 158.3 243 35.8
AL3G29490 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 6.2e-25 119.0 103 56.3
SEGI_33872 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 6.2e-25 119.0 119 47.9
MCO02G049 Micromonas commoda HOM05D005298 ORTHO05D008015 3.2e-21 106.7 304 28.9
SEGI_08042 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 1.2e-09 68.2 64 50.0
PRCOL_00002040 Prasinoderma coloniale HOM05D005298 ORTHO05D008015 1.6e-09 67.8 176 27.8
TPR.G40673 Trifolium pratense HOM05D005298 ORTHO05D037798 9.9e-07 58.5 65 46.2


User provided reference genes

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