Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb303750 Zea mays HOM05D030038 ORTHO05D001770 1.5e-89 332.8 168 100.0
Zm00001eb095060 Zea mays HOM05D030038 ORTHO05D001770 5.5e-39 164.9 171 66.1
Os07g0230600 Oryza sativa ssp. japonica HOM05D002277 ORTHO05D001770 8.6e-16 87.8 149 42.3
Zm00001eb435580 Zea mays HOM05D030038 ORTHO05D001770 4.4e-12 75.5 106 50.0
Zm00001eb062280 Zea mays HOM05D030038 ORTHO05D001770 1.3e-11 73.9 108 50.9
FAN10G1465 Fragaria x ananassa HOM05D002277 ORTHO05D001770 8.3e-11 71.2 173 32.4
RcHm_v2.0_Chr1g0371651 Rosa chinensis HOM05D002277 ORTHO05D001770 2.0e-09 66.6 172 33.1
CSS0032322 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 7.8e-09 64.7 179 33.5
FAN06G1120 Fragaria x ananassa HOM05D002277 ORTHO05D001770 7.8e-09 64.7 175 31.4
FvH4_7g25590 Fragaria vesca HOM05D002277 ORTHO05D001770 1.0e-08 64.3 175 31.4
QL07p032796 Quercus lobata HOM05D002277 ORTHO05D001770 1.0e-08 64.3 165 33.9
PSO384G4841 Papaver somniferum HOM05D002277 ORTHO05D001770 1.3e-08 63.9 91 45.1
Zm00001eb350250 Zea mays HOM05D002277 ORTHO05D001770 1.3e-08 63.9 100 37.0
MSTRG.18959 Avicennia marina HOM05D002277 ORTHO05D001770 1.7e-08 63.5 138 34.1
HPP92_011988 Vanilla planifolia HOM05D002277 ORTHO05D001770 3.0e-08 62.8 170 31.2
Cc06_g00560 Coffea canephora HOM05D002277 ORTHO05D001770 3.9e-08 62.4 124 36.3
Aqoxy85s002 Aquilegia oxysepala HOM05D002277 ORTHO05D001770 8.6e-08 61.2 133 36.1
Duzib212G0079 Durio zibethinus HOM05D002277 ORTHO05D001770 1.1e-07 60.8 93 44.1
Cc02_g05610 Coffea canephora HOM05D002277 ORTHO05D001770 1.9e-07 60.1 179 33.5
Oeu058656.1 Olea europaea HOM05D002277 ORTHO05D001770 1.9e-07 60.1 100 40.0
QL08p064469 Quercus lobata HOM05D002277 ORTHO05D001770 2.5e-07 59.7 103 39.8
Prupe.6G289800 Prunus persica HOM05D002277 ORTHO05D001770 3.3e-07 59.3 123 35.8
TAR629G0672 Trochodendron aralioides HOM05D002277 ORTHO05D001770 3.3e-07 59.3 93 41.9
Zm00001eb282060 Zea mays HOM05D002277 ORTHO05D001770 3.3e-07 59.3 107 38.3
Actinidia29050 Actinidia chinensis HOM05D002277 ORTHO05D001770 4.3e-07 58.9 127 33.9
MBI15_g33145_MAGBIO Magnolia biondii HOM05D002277 ORTHO05D001770 4.3e-07 58.9 67 43.3
TAR636G1485 Trochodendron aralioides HOM05D002277 ORTHO05D001770 4.3e-07 58.9 93 41.9
FAN03G3432 Fragaria x ananassa HOM05D002277 ORTHO05D001770 5.6e-07 58.5 73 43.8
Manes.10G005600 Manihot esculenta HOM05D002277 ORTHO05D001770 5.6e-07 58.5 106 36.8
Os01g0824900 Oryza sativa ssp. japonica HOM05D002277 ORTHO05D001770 7.3e-07 58.2 79 49.4
Ciclev10033390m.g Citrus clementina HOM05D002277 ORTHO05D001770 9.5e-07 57.8 101 39.6
Prupe.2G261100 Prunus persica HOM05D002277 ORTHO05D001770 9.5e-07 57.8 96 37.5
Atru.chr12.148 Acer truncatum HOM05D002277 ORTHO05D001770 1.2e-06 57.4 100 39.0
Actinidia33883 Actinidia chinensis HOM05D002277 ORTHO05D001770 1.2e-06 57.4 95 42.1
FvH4_6g10240 Fragaria vesca HOM05D002277 ORTHO05D001770 1.2e-06 57.4 79 41.8
FAN14G3640 Fragaria x ananassa HOM05D002277 ORTHO05D001770 1.2e-06 57.4 79 41.8
Gohir.A10G149200 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.2e-06 57.4 105 41.0
Sed0026001 Sechium edule HOM05D002277 ORTHO05D001770 1.2e-06 57.4 171 33.3
ATR0681G220 Amborella trichopoda HOM05D002277 ORTHO05D001770 1.6e-06 57.0 77 42.9
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 1.6e-06 57.0 87 41.4
Gohir.A02G005000 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.6e-06 57.0 110 37.3
Gohir.D04G013500 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.6e-06 57.0 91 44.0
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 1.6e-06 57.0 94 40.4
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 2.1e-06 56.6 94 40.4
Gohir.D10G117600 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.1e-06 56.6 99 42.4
Lsat_1_v5_gn_2_125460 Lactuca sativa HOM05D002277 ORTHO05D001770 2.1e-06 56.6 124 32.3
Manes.07G138400 Manihot esculenta HOM05D002277 ORTHO05D001770 2.8e-06 56.2 97 38.1
Oeu033238.1 Olea europaea HOM05D002277 ORTHO05D001770 2.8e-06 56.2 84 39.3
PSO339G6062 Papaver somniferum HOM05D002277 ORTHO05D001770 2.8e-06 56.2 66 48.5
Sabra13G0072000 Salix brachista HOM05D002277 ORTHO05D001770 2.8e-06 56.2 95 35.8
CSS0043215 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 3.6e-06 55.8 103 42.7
Gohir.A05G402100 Gossypium hirsutum HOM05D002277 ORTHO05D001770 3.6e-06 55.8 102 39.2
Gorai.012G015800 Gossypium raimondii HOM05D002277 ORTHO05D001770 3.6e-06 55.8 102 39.2
Thecc.04G155300 Theobroma cacao HOM05D002277 ORTHO05D001770 3.6e-06 55.8 87 41.4
MSTRG.27280 Avicennia marina HOM05D002277 ORTHO05D001770 4.7e-06 55.5 85 43.5
MSTRG.8902 Avicennia marina HOM05D002277 ORTHO05D001770 4.7e-06 55.5 74 48.6
EL10Ac2g04267 Beta vulgaris HOM05D002277 ORTHO05D001770 6.2e-06 55.1 140 30.0
Manes.09G115500 Manihot esculenta HOM05D002277 ORTHO05D001770 6.2e-06 55.1 108 38.0
Rhsim09G0183700 Rhododendron simsii HOM05D002277 ORTHO05D001770 6.2e-06 55.1 90 41.1
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 6.2e-06 55.1 79 43.0
Sabra13G0071200 Salix brachista HOM05D002277 ORTHO05D001770 6.2e-06 55.1 95 35.8
TAR633G2754 Trochodendron aralioides HOM05D002277 ORTHO05D001770 6.2e-06 55.1 106 35.8
CSS0000970 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 8.0e-06 54.7 103 42.7
CiPaw.09G218200 Carya illinoinensis HOM05D002277 ORTHO05D001770 8.0e-06 54.7 92 41.3
Haze_21138 Corylus avellana HOM05D002277 ORTHO05D001770 8.0e-06 54.7 106 34.9
Haze_21144 Corylus avellana HOM05D002277 ORTHO05D001770 8.0e-06 54.7 106 34.9
Haze_21148 Corylus avellana HOM05D002277 ORTHO05D001770 8.0e-06 54.7 106 34.9
TAR623G1362 Trochodendron aralioides HOM05D002277 ORTHO05D001770 8.0e-06 54.7 79 44.3


User provided reference genes

Program Settings